Name: Amycolatopsis dongchuanensis DSM 45426
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13286

Type strain:

Species: Amycolatopsis dongchuanensis

Variant: Isotype of BacDive ID 13287

Culture col. no.: DSM 45426, CCTCC AA 2011016, JCM 18054, YIM 75904

Strain history: <- S.-K. Tang, YIM; YIM 75904 <- J. Zhang

NCBI tax ID(s): 1070866 (species)

SI-ID 412338

DSM 45426

Other strains from Amycolatopsis dongchuanensis

A. dongchuanensis DSM 45675, CCTCC AA 2011016, JCM ... (type strain)

Section

Amycolatopsis dongchuanensis DSM 45426 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil from a dry and hot river valley.

Gram-positive
rod-shaped
spore-forming
aerobe
mesophilic
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis dongchuanensis**
	Full Scientific Name (LPSN)	Amycolatopsis dongchuanensis Nie et al. 2012

Information on morphological and physiological properties Morphology

[Ref.: #30527]	Gram stain	positive

[Ref.: #30527]	Cell shape	rod-shaped

[Ref.: #30527]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16794]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #16794]

Culture medium growth

[Ref.: #16794]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16794]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16794]	growth	28 °C
[Ref.: #30527]	growth	10-45 °C
[Ref.: #30527]	optimum	28 °C

[Ref.: #16794]	Temperature range	mesophilic
[Ref.: #30527]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #30527]			optimum	7.5
[Ref.: #30527]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #30527]

Oxygen tolerance

aerobe

[Ref.: #30527]

Ability of spore formation

yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #30527]		NaCl		growth	0-7	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #30527]	arabinose ChEBI	+	carbon source
[Ref.: #30527]	fructose ChEBI	+	carbon source
[Ref.: #30527]	galactose ChEBI	+	carbon source
[Ref.: #30527]	glucose ChEBI	+	carbon source
[Ref.: #30527]	lactose ChEBI	+	carbon source
[Ref.: #30527]	maltose ChEBI	+	carbon source
[Ref.: #30527]	mannose ChEBI	+	carbon source
[Ref.: #30527]	nitrate ChEBI	+	reduction
[Ref.: #30527]	rhamnose ChEBI	+	carbon source
[Ref.: #30527]	sodium citrate ChEBI	+	carbon source
[Ref.: #30527]	succinate ChEBI	+	carbon source
[Ref.: #30527]	sucrose ChEBI	+	carbon source
[Ref.: #30527]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #30527]	catalase	+	1.11.1.6
[Ref.: #30527]	gelatinase	+
[Ref.: #30527]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16794]	Sample type/isolated from	soil from a dry and hot river valley
[Ref.: #16794]	Geographic location (country and/or sea, region)	Yunnan province, Dongchuan county
[Ref.: #16794]	Country	China
[Ref.: #16794]	Country ISO 3 Code	CHN
[Ref.: #16794]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Soil
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16794]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

[Ref.: #16794]	GC-content	68.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #30527]	GC-content	68.5 mol%

Availability in culture collections External links

[Ref.: #16794]

Culture collection no.

DSM 45426, CCTCC AA 2011016, JCM 18054, YIM 75904

[Ref.: #82487]

SI-ID 412338

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Amycolatopsis rhizosphaerae sp. nov., isolated from rice rhizosphere soil.	Thawai C	Int J Syst Evol Microbiol	10.1099/ijsem.0.002704	2018	*
Phylogeny	Amycolatopsis cihanbeyliensis sp. nov., a halotolerant actinomycete isolated from a salt mine.	Tatar D, Sazak A, Guven K, Cetin D, Sahin N	Int J Syst Evol Microbiol	10.1099/ijs.0.050963-0	2013	*
Phylogeny	Amycolatopsis magusensis sp. nov., isolated from soil.	Camas M, Sahin N, Sazak A, Sproer C, Klenk HP	Int J Syst Evol Microbiol	10.1099/ijs.0.042770-0	2012	*
Phylogeny	Amycolatopsis dongchuanensis sp. nov., an actinobacterium isolated from soil.	Nie GX, Ming H, Li S, Zhou EM, Cheng J, Tang X, Feng HG, Tang SK, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.038125-0	2011	*

References

#16794

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45426

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#30527

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26859 (see below)

#82487

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID412338.1 )

#26859

IJSEM 2650 2012 ( DOI 10.1099/ijs.0.038125-0 , PubMed 22199220 )

* These data were automatically processed and therefore are not curated

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