Name: Thermosipho africanus TCF52B
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132828

Type strain:

Species: Thermosipho africanus

Strain Designation: TCF52B

Culture col. no.: DSM 24758

Strain history: <- H. Dahle, Univ. Bergen, Norway; TCF52B <- H. Dahle {2003}

NCBI tax ID(s): 2421 (species)

SI-ID 397232

DSM 24758

Other strains from Thermosipho africanus

T. africanus Ob7, DSM 5309 (type strain)
T. africanus TB5A, DSM 13782

Section

Thermosipho africanus TCF52B is a thermophilic bacterium that was isolated from produced water from oil well.

thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermotogota*
	Class	*Thermotogae*
	Order	*Thermotogales*
	Family	*Fervidobacteriaceae*
	Genus	*Thermosipho*
	Species	**Thermosipho africanus**
	Full Scientific Name (LPSN)	Thermosipho africanus Huber et al. 1989

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24616]

Culture medium

METHANOCOCCOIDES MEDIUM (DSMZ Medium 141c)

[Ref.: #24616]

Culture medium growth

[Ref.: #24616]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24616]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24616]			growth	75 °C

[Ref.: #24616]

Temperature range

thermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24616]	Sample type/isolated from	produced water from oil well
[Ref.: #24616]	Geographic location (country and/or sea, region)	North Sea
[Ref.: #24616]	Country	Norway
[Ref.: #24616]	Country ISO 3 Code	NOR
[Ref.: #24616]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Industrial	#Oil reservoir
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ647058 (>99% sequence identity) for Thermosipho from Microbeatlas

Aquatic Samples	33
Soil Samples
Animal Samples	12
Plant Samples	1
Total Samples	46

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24616]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24616]	Thermosipho africanus strain TCF52B 16S ribosomal RNA gene, partial sequence	DQ647058	1492	ENA	484019 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermosipho africanus TCF52B	GCA_000021285	complete	GenBank	484019 tax ID	*
[Ref.: #66792]	Thermosipho africanus TCF52B	484019.4	complete	PATRIC	484019 tax ID	*
[Ref.: #66792]	Thermosipho africanus TCF52B	643348583	complete	JGI IMG/M	484019 tax ID	*

[Ref.: #24616]

GC-content

30.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermosipho africanus TCF52B TCF52B NCBI: GCA_000021285.1
[Ref.: #69480]	motile	yes	89.758	no
[Ref.: #69480]	flagellated	no	88.982	no
[Ref.: #69480]	gram-positive	no	94.52	no
[Ref.: #69480]	anaerobic	yes	99.448	no
[Ref.: #69480]	halophile	no	91.768	no
[Ref.: #69480]	spore-forming	no	88.054	no
[Ref.: #69480]	glucose-util	yes	89.233	no
[Ref.: #69480]	aerobic	no	98.704	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-ferment	yes	51.245	no

Availability in culture collections External links

[Ref.: #24616]

Culture collection no.

DSM 24758

[Ref.: #91120]

SI-ID 397232

Literature:

Topic	Title	Authors	Journal	DOI	Year
Stress	Structure and function of the putative thioredoxin 1 from the thermophilic eubacterium Thermosipho africanus strain TCF52B.	Sahtout N, Kuttiyatveetil JRA, Sanders DAR	Biochim Biophys Acta Proteins Proteom	10.1016/j.bbapap.2019.01.011	2019	*
Metabolism	Biochemical properties of GH94 cellodextrin phosphorylase THA_1941 from a thermophilic eubacterium Thermosipho africanus TCF52B with cellobiose phosphorylase activity.	Wu Y, Mao G, Fan H, Song A, Zhang YP, Chen H	Sci Rep	10.1038/s41598-017-05289-x	2017	*
Metabolism	Putative thioredoxin Trx1 from Thermosipho africanus strain TCF52B: expression, purification and structural determination using S-SAD.	Sahtout N, Kuttiyatveetil JR, Fodje M, Sanders DA	Acta Crystallogr F Struct Biol Commun	10.1107/S2053230X16007214	2016	*
Phylogeny	The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea.	Nesbo CL, Bapteste E, Curtis B, Dahle H, Lopez P, Macleod D, Dlutek M, Bowman S, Zhaxybayeva O, Birkeland NK, Doolittle WF	J Bacteriol	10.1128/JB.01448-08	2009	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24616

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24758

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#91120

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397232.1 )

* These data were automatically processed and therefore are not curated

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Thermosipho africanus TCF52B TCF52B

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