Wukongibacter baidiensis (DSM 103478, KCTC 15549, MCCC 1A01532)

Name: Wukongibacter baidiensis (DSM 103478, KCTC 15549, MCCC 1A01532)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132678

Type strain

Strain Designation DY30321

Culture col. no. DSM 103478 KCTC 15549 MCCC 1A01532 DY30321

NCBI tax ID(s) 1723361

Special Collections DSMZ KCTC Literature strains

History <- G. Li, Third Inst. Oceanography, State Oceanic Administration, Xiamen, China; DY30321 <- X. Zhang and G. Li {2014}

Links

Wukongibacter baidiensis DY30321 is an anaerobe, spore-forming, Gram-positive prokaryote that was isolated from mixture of sulfides , grey sediment and black magmatic rock glass at a water depth of 2327 m.

spore-forming Gram-positive rod-shaped anaerobe 16S sequence

Name and taxonomic classification

SI-ID 397428

LMG 29529,KCTC 15549,DSM 103478

@ref 20215

Last LPSN update 2026-02-09 11:31:46

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Peptostreptococcales

Family Peptostreptococcaceae

Genus Wukongibacter

Species Wukongibacter baidiensis

Full scientific name Wukongibacter baidiensis Li et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
25020	positive	1.6-10.5 µm	0.4-0.6 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Incubation period	Medium used
25020	5 mm	creamy	2 days	YTG agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
25020	YTG agar
24467	PARAMALEDIVIBACTER MEDIUM (DSMZ Medium 986)		Medium recipe at MediaDive	Name: PARAMALEDIVIBACTER MEDIUM (DSMZ Medium 986) Composition: Sea Salt 29.97 g/l D-Glucose 3.996 g/l NaHCO3 1.998 g/l NH4Cl 0.999001 g/l Peptone 0.499501 g/l Yeast extract 0.499501 g/l KH2PO4 0.2997 g/l K2HPO4 0.2997 g/l L-Cysteine HCl x H2O 0.24975 g/l Na2S x 9 H2O 0.24975 g/l Sodium resazurin 0.0004995 g/l Pyridoxine hydrochloride 9.99001e-05 g/l Calcium D-(+)-pantothenate 4.995e-05 g/l Thiamine HCl 4.995e-05 g/l Riboflavin 4.995e-05 g/l Nicotinic acid 4.995e-05 g/l (DL)-alpha-Lipoic acid 4.995e-05 g/l p-Aminobenzoic acid 4.995e-05 g/l Folic acid 1.998e-05 g/l Biotin 1.998e-05 g/l Vitamin B12 9.99001e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24467	positive	growth	30	mesophilic
25020	positive	growth	10-45
25020	positive	optimum	30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
25020	positive	optimum	8
25020	positive	growth	2.0-10.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

25020

Oxygen toleranceanaerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation
25020	terminal end	endospore

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25020	64552 ChEBI	2-hydroxybutyrate	+	respiration
25020	16763 ChEBI	2-oxobutanoate	+	carbon source
25020	37054 ChEBI	3-hydroxybutyrate	+	respiration
25020	37054 ChEBI	3-hydroxybutyrate	+	carbon source
25020	22599 ChEBI	arabinose	-	builds acid from
25020	22599 ChEBI	arabinose	-	carbon source
25020	17057 ChEBI	cellobiose	-	builds acid from
25020	17057 ChEBI	cellobiose	-	carbon source
25020	15824 ChEBI	D-fructose	-	carbon source
25020	18024 ChEBI	D-galacturonic acid	+	respiration
25020	16899 ChEBI	D-mannitol	-	carbon source
25020	16024 ChEBI	D-mannose	-	carbon source
25020	16024 ChEBI	D-mannose	+	respiration
25020		esculin ferric citrate	-	carbon source
25020	5291 ChEBI	gelatin	+	carbon source
25020	17234 ChEBI	glucose	-	builds acid from
25020	17234 ChEBI	glucose	+	builds acid from
25020	17234 ChEBI	glucose	+	carbon source
25020	17754 ChEBI	glycerol	-	builds acid from
25020	15978 ChEBI	glycerol 3-phosphate	-	carbon source
25020	18287 ChEBI	L-fucose	+	respiration
25020	18287 ChEBI	L-fucose	+	carbon source
25020	29985 ChEBI	L-glutamate	+	respiration
25020	18050 ChEBI	L-glutamine	+	carbon source
25020	62345 ChEBI	L-rhamnose	+	respiration
25020	62345 ChEBI	L-rhamnose	+	carbon source
25020	16857 ChEBI	L-threonine	-	carbon source
25020	17716 ChEBI	lactose	-	builds acid from
25020	17306 ChEBI	maltose	-	builds acid from
25020	29864 ChEBI	mannitol	-	builds acid from
25020	37684 ChEBI	mannose	-	builds acid from
25020	6731 ChEBI	melezitose	-	carbon source
25020	51850 ChEBI	methyl pyruvate	+	respiration
25020	51850 ChEBI	methyl pyruvate	+	carbon source
25020	28037 ChEBI	N-acetylgalactosamine	-	respiration
25020	18394 ChEBI	palatinose	+	respiration
25020	18394 ChEBI	palatinose	+	carbon source
25020	15361 ChEBI	pyruvate	+	respiration
25020	15361 ChEBI	pyruvate	+	carbon source
25020	17814 ChEBI	salicin	-	builds acid from
25020	17992 ChEBI	sucrose	-	builds acid from
25020	17992 ChEBI	sucrose	-	carbon source
25020	17992 ChEBI	sucrose	+	respiration
25020	27082 ChEBI	trehalose	-	carbon source
25020	27897 ChEBI	tryptophan	+	energy source
25020	18222 ChEBI	xylose	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25020	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
25020	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
25020	beta-glucosidase	-	3.2.1.21
25020	catalase	-	1.11.1.6
25020	gelatinase	+
25020	tryptophan deaminase	+	4.1.99.1
25020	urease	-	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Sediment
#Environmental	#Terrestrial	#Volcanic
#Condition	#Sulfuric	-

Isolation

@ref	Sample type	Geographic location	Country	Latitude	Longitude
24467	mixture of sulfides (about 30 %, v/v), grey sediment and black magmatic rock glass at a water depth of 2327 m	Southwest Indian Ridge, Baidi hydrothermal field	International waters	-38	48.15 -38/48.15

Taxonmaps

69479

Global distribution of 16S sequence KT783480 (>99% sequence identity) for Wukongibacter baidiensis subclade from Microbeatlas

Aquatic Samples	44
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	45

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24467	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24467	Wukongibacter baidiensis strain DY30321 16S ribosomal RNA gene, partial sequence	KT783480	1455		1723361

GC content

@ref	GC-content (mol%)	Method
25020	33.4	genome sequence analysis
24467	33.4	sequence analysis

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Wukongibacter baidiensis gen. nov., sp. nov., an anaerobic bacterium isolated from hydrothermal sulfides, and proposal for the reclassification of the closely related Clostridium halophilum and Clostridium caminithermale within Maledivibacter gen. nov. and Paramaledivibacter gen. nov., respectively.	Li G, Zeng X, Liu X, Zhang X, Shao Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001355	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24467	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103478
#25020	G. Z. Li, X.,Liu, X.,Zhang, X.,Shao, Z.: Wukongibacter baidiensis gen. nov., sp. nov., an anaerobic bacterium isolated from hydrothermal sulfides, and proposal for the reclassification of the closely related Clostridium halophilum and Clostridium caminithermale within Maledivibacter gen. nov. and Paramaledivibacter gen. nov., respectively. IJSEM 66: 4355 - 4361 2016 ( DOI 10.1099/ijsem.0.001355 , PubMed 27473553 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Wukongibacter baidiensis (DSM 103478, KCTC 15549, MCCC 1A01532)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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