Actinocrispum wychmicini MI503-A4 is an aerobe, Gram-positive bacterium that builds an aerial mycelium and was isolated from soil.
Gram-positive aerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Pseudonocardiales |
| Family Pseudonocardiaceae |
| Genus Actinocrispum |
| Species Actinocrispum wychmicini |
| Full scientific name Actinocrispum wychmicini Hatano et al. 2016 |
| @ref | Colony color | Medium used | |
|---|---|---|---|
| 69454 | Clay brown (8003, ochre brown (8001) | ISP 2 | |
| 69454 | Ivory (1014) | ISP 4 | |
| 69454 | Ivory (1014) | suter without tyrosine | |
| 69454 | Sand yellow (1002) | ISP 6 | |
| 69454 | Sand yellow (1002), brown beige (1011) | ISP 3 | |
| 69454 | Sand yellow (1002),ochre yellow (1024) | ISP 5 | |
| 69454 | Sand yellow (1002),ochre yellow (1024) | ISP 7 | |
| 69454 | Sand yellow (1002),ochre yellow (1024) | suter with tyrosine |
| @ref | Forms multicellular complex | Complex name | Complex color | Medium name | |
|---|---|---|---|---|---|
| 69454 | Aerial mycelium | Cream (9001) | ISP 2 | ||
| 69454 | Aerial mycelium | Signal white (9003) | ISP 3 | ||
| 69454 | Aerial mycelium | ISP 4 | |||
| 69454 | Aerial mycelium | Signal white (9003) | ISP 5 | ||
| 69454 | Aerial mycelium | ISP 6 | |||
| 69454 | Aerial mycelium | Pure white (9010) | ISP 7 | ||
| 69454 | Aerial mycelium | suter with tyrosine | |||
| 69454 | Aerial mycelium | suter without tyrosine |
| @ref: | 69454 |
| multimedia content: | DSM_45934_image3.jpeg |
| multimedia.multimedia content: | DSM_45934_image3.jpeg |
| caption: | Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref: | 69454 |
| multimedia content: | DSM_45934_image4.jpeg |
| multimedia.multimedia content: | DSM_45934_image4.jpeg |
| caption: | Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7) |
| intellectual property rights: | Helmholtz-Zentrum für Infektionsforschung GmbH |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 24979 | Yeast extract-malt extract agar (ISP2) | ||||
| 24979 | Oatmeal agar (ISP3) | ||||
| 24979 | Inorganic salts-starch agar (ISP4) | ||||
| 24979 | Glycerol-asparagine agar (ISP5) | ||||
| 24979 | Tyrosine Agar (ISP7) | ||||
| 24979 | soil extract agar | ||||
| 24979 | water agar | ||||
| 24457 | GPHF-MEDIUM (DSMZ Medium 553) | Medium recipe at MediaDive | Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water |
| 24979 | Spore formationno |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 24979 | 16708 ChEBI | adenine | - | hydrolysis | |
| 69454 | 22599 ChEBI | arabinose | - | growth | |
| 24979 | 16150 ChEBI | benzoate | - | assimilation | |
| 24979 | casein | + | hydrolysis | ||
| 24979 | 17057 ChEBI | cellobiose | + | builds acid from | |
| 69454 | 62968 ChEBI | cellulose | - | growth | |
| 24979 | 16947 ChEBI | citrate | + | assimilation | |
| 24979 | 15824 ChEBI | D-fructose | + | builds acid from | |
| 24979 | 15824 ChEBI | D-fructose | + | assimilation | |
| 24979 | 12936 ChEBI | D-galactose | + | builds acid from | |
| 24979 | 17634 ChEBI | D-glucose | + | assimilation | |
| 24979 | 17634 ChEBI | D-glucose | + | builds acid from | |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 24979 | 16899 ChEBI | D-mannitol | + | assimilation | |
| 24979 | 16899 ChEBI | D-mannitol | + | builds acid from | |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 24979 | 16024 ChEBI | D-mannose | + | builds acid from | |
| 24979 | 16988 ChEBI | D-ribose | + | builds acid from | |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 24979 | 65327 ChEBI | D-xylose | + | assimilation | |
| 24979 | 65327 ChEBI | D-xylose | + | builds acid from | |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 24979 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68379 | 4853 ChEBI | esculin | - | hydrolysis | from API Coryne |
| 69454 | 28757 ChEBI | fructose | + | growth | |
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 69454 | 17234 ChEBI | glucose | + | growth | |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 24979 | 17368 ChEBI | hypoxanthine | + | hydrolysis | |
| 69454 | 17268 ChEBI | inositol | + | growth | |
| 24979 | 62345 ChEBI | L-rhamnose | + | assimilation | |
| 24979 | 17895 ChEBI | L-tyrosine | + | hydrolysis | |
| 24979 | 17716 ChEBI | lactose | + | builds acid from | |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 24979 | 17306 ChEBI | maltose | + | builds acid from | |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 69454 | 37684 ChEBI | mannose | + | growth | |
| 24979 | 28053 ChEBI | melibiose | + | builds acid from | |
| 24979 | 17268 ChEBI | myo-inositol | + | assimilation | |
| 24979 | 17268 ChEBI | myo-inositol | + | builds acid from | |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 24979 | 16634 ChEBI | raffinose | + | assimilation | |
| 24979 | 16634 ChEBI | raffinose | + | builds acid from | |
| 69454 | 16634 ChEBI | raffinose | - | growth | |
| 24979 | 26546 ChEBI | rhamnose | + | builds acid from | |
| 69454 | 26546 ChEBI | rhamnose | + | growth | |
| 24979 | 28017 ChEBI | starch | + | hydrolysis | |
| 24979 | 30031 ChEBI | succinate | + | assimilation | |
| 24979 | 17992 ChEBI | sucrose | + | builds acid from | |
| 24979 | 17992 ChEBI | sucrose | + | assimilation | |
| 68379 | 17992 ChEBI | sucrose | - | fermentation | from API Coryne |
| 69454 | 17992 ChEBI | sucrose | +/- | growth | |
| 24979 | 27082 ChEBI | trehalose | + | builds acid from | |
| 68379 | 16199 ChEBI | urea | - | hydrolysis | from API Coryne |
| 24979 | 15318 ChEBI | xanthine | - | hydrolysis | |
| 69454 | 18222 ChEBI | xylose | +/- | growth |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | + | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68379 | beta-glucosidase | - | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 68382 | cystine arylamidase | + | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 68379 | gelatinase | + | from API Coryne | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API Coryne |
| 68379 | pyrazinamidase | + | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 68379 | urease | - | 3.5.1.5 | from API Coryne |
| 68382 | valine arylamidase | + | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | butanoate fermentation | 100 | 4 of 4 | ||
| 66794 | biotin biosynthesis | 100 | 4 of 4 | ||
| 66794 | 4-hydroxymandelate degradation | 100 | 9 of 9 | ||
| 66794 | ethanol fermentation | 100 | 2 of 2 | ||
| 66794 | threonine metabolism | 100 | 10 of 10 | ||
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | ||
| 66794 | glycogen metabolism | 100 | 5 of 5 | ||
| 66794 | starch degradation | 100 | 10 of 10 | ||
| 66794 | urea cycle | 100 | 13 of 13 | ||
| 66794 | resorcinol degradation | 100 | 2 of 2 | ||
| 66794 | valine metabolism | 100 | 9 of 9 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | phenol degradation | 100 | 20 of 20 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | phenylmercury acetate degradation | 100 | 2 of 2 | ||
| 66794 | acetate fermentation | 100 | 4 of 4 | ||
| 66794 | 3-chlorocatechol degradation | 100 | 5 of 5 | ||
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | ||
| 66794 | kanosamine biosynthesis II | 100 | 2 of 2 | ||
| 66794 | cellulose degradation | 100 | 5 of 5 | ||
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | ||
| 66794 | reductive acetyl coenzyme A pathway | 100 | 7 of 7 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | ||
| 66794 | taurine degradation | 100 | 1 of 1 | ||
| 66794 | glycine betaine biosynthesis | 100 | 5 of 5 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | ||
| 66794 | NAD metabolism | 94.44 | 17 of 18 | ||
| 66794 | flavin biosynthesis | 93.33 | 14 of 15 | ||
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | ||
| 66794 | leucine metabolism | 92.31 | 12 of 13 | ||
| 66794 | proline metabolism | 90.91 | 10 of 11 | ||
| 66794 | purine metabolism | 89.36 | 84 of 94 | ||
| 66794 | serine metabolism | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | ||
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | ||
| 66794 | d-mannose degradation | 88.89 | 8 of 9 | ||
| 66794 | vitamin B12 metabolism | 88.24 | 30 of 34 | ||
| 66794 | isoleucine metabolism | 87.5 | 7 of 8 | ||
| 66794 | dTDPLrhamnose biosynthesis | 87.5 | 7 of 8 | ||
| 66794 | tryptophan metabolism | 86.84 | 33 of 38 | ||
| 66794 | peptidoglycan biosynthesis | 86.67 | 13 of 15 | ||
| 66794 | aclacinomycin biosynthesis | 85.71 | 6 of 7 | ||
| 66794 | glutathione metabolism | 85.71 | 12 of 14 | ||
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | ubiquinone biosynthesis | 85.71 | 6 of 7 | ||
| 66794 | propanol degradation | 85.71 | 6 of 7 | ||
| 66794 | tetrahydrofolate metabolism | 85.71 | 12 of 14 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | alanine metabolism | 82.76 | 24 of 29 | ||
| 66794 | glycolysis | 82.35 | 14 of 17 | ||
| 66794 | pentose phosphate pathway | 81.82 | 9 of 11 | ||
| 66794 | metabolism of disaccharids | 81.82 | 9 of 11 | ||
| 66794 | factor 420 biosynthesis | 80 | 4 of 5 | ||
| 66794 | myo-inositol biosynthesis | 80 | 8 of 10 | ||
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | ||
| 66794 | propionate fermentation | 80 | 8 of 10 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 80 | 8 of 10 | ||
| 66794 | pyrimidine metabolism | 80 | 36 of 45 | ||
| 66794 | metabolism of amino sugars and derivatives | 80 | 4 of 5 | ||
| 66794 | hydrogen production | 80 | 4 of 5 | ||
| 66794 | histidine metabolism | 79.31 | 23 of 29 | ||
| 66794 | arginine metabolism | 79.17 | 19 of 24 | ||
| 66794 | photosynthesis | 78.57 | 11 of 14 | ||
| 66794 | polyamine pathway | 78.26 | 18 of 23 | ||
| 66794 | allantoin degradation | 77.78 | 7 of 9 | ||
| 66794 | degradation of hexoses | 77.78 | 14 of 18 | ||
| 66794 | methionine metabolism | 76.92 | 20 of 26 | ||
| 66794 | lysine metabolism | 76.19 | 32 of 42 | ||
| 66794 | cyclohexanol degradation | 75 | 3 of 4 | ||
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | ketogluconate metabolism | 75 | 6 of 8 | ||
| 66794 | gluconeogenesis | 75 | 6 of 8 | ||
| 66794 | oxidative phosphorylation | 73.63 | 67 of 91 | ||
| 66794 | 3-phenylpropionate degradation | 73.33 | 11 of 15 | ||
| 66794 | cysteine metabolism | 72.22 | 13 of 18 | ||
| 66794 | degradation of sugar acids | 72 | 18 of 25 | ||
| 66794 | tyrosine metabolism | 71.43 | 10 of 14 | ||
| 66794 | non-pathway related | 71.05 | 27 of 38 | ||
| 66794 | coenzyme M biosynthesis | 70 | 7 of 10 | ||
| 66794 | androgen and estrogen metabolism | 68.75 | 11 of 16 | ||
| 66794 | degradation of pentoses | 67.86 | 19 of 28 | ||
| 66794 | lipid metabolism | 67.74 | 21 of 31 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 66.67 | 8 of 12 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | selenocysteine biosynthesis | 66.67 | 4 of 6 | ||
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | ||
| 66794 | carnitine metabolism | 62.5 | 5 of 8 | ||
| 66794 | degradation of sugar alcohols | 62.5 | 10 of 16 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 62.5 | 5 of 8 | ||
| 66794 | sulfate reduction | 61.54 | 8 of 13 | ||
| 66794 | isoprenoid biosynthesis | 61.54 | 16 of 26 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 61.54 | 8 of 13 | ||
| 66794 | gallate degradation | 60 | 3 of 5 | ||
| 66794 | lipoate biosynthesis | 60 | 3 of 5 | ||
| 66794 | daunorubicin biosynthesis | 55.56 | 5 of 9 | ||
| 66794 | nitrate assimilation | 55.56 | 5 of 9 | ||
| 66794 | carotenoid biosynthesis | 54.55 | 12 of 22 | ||
| 66794 | toluene degradation | 50 | 2 of 4 | ||
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | glycine metabolism | 50 | 5 of 10 | ||
| 66794 | catecholamine biosynthesis | 50 | 2 of 4 | ||
| 66794 | vitamin E metabolism | 50 | 2 of 4 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | bile acid biosynthesis, neutral pathway | 47.06 | 8 of 17 | ||
| 66794 | phenylpropanoid biosynthesis | 46.15 | 6 of 13 | ||
| 66794 | cholesterol biosynthesis | 45.45 | 5 of 11 | ||
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | arachidonic acid metabolism | 44.44 | 8 of 18 | ||
| 66794 | mevalonate metabolism | 42.86 | 3 of 7 | ||
| 66794 | benzoyl-CoA degradation | 42.86 | 3 of 7 | ||
| 66794 | ascorbate metabolism | 40.91 | 9 of 22 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | ||
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | ||
| 66794 | vitamin B6 metabolism | 36.36 | 4 of 11 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | chlorophyll metabolism | 33.33 | 6 of 18 | ||
| 66794 | methanogenesis from CO2 | 33.33 | 4 of 12 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 |
| @ref | Sample type | Geographic location | Country | Country ISO 3 Code | Continent | Enrichment culture | Enrichment culture composition | Enrichment culture duration | Enrichment culture temperature | Isolation procedure | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| 24457 | soil | Aomori Prefecture, Kuroishi | Japan | JPN | Asia | ||||||
| 24979 | agar plates | containing 12.5 g glycerol, 1.0 g arginine, 1.0 g K2HPO4 , 1.0 g NaCl, 0.5 g MgSO4.7H2O, 20 g agar (Becton & Dickinson) in 1 l deionized water (pH 7.0) | 14 days | 27 | dilution plating technique |
Global distribution of 16S sequence AB738044 (>99% sequence identity) for Kibdelosporangium from Microbeatlas ![]()
| @ref | Biosafety level | Biosafety level comment | |
|---|---|---|---|
| 24457 | 1 | Risk group (German classification) |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM434564v1 assembly for Actinocrispum wychmicini DSM 45934 | scaffold | 1213861 | 67 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 24457 | Kibdelosporangium sp. MI503-A4 gene for 16S ribosomal RNA, partial sequence | AB738044 | 1480 | 1213861 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 99.60 | no |
| 125439 | motility | BacteriaNetⓘ | no | 94.60 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 87.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 87.20 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.61 | yes |
| 125438 | aerobic | aerobicⓘ | yes | 86.95 | yes |
| 125438 | spore-forming | spore-formingⓘ | yes | 71.73 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 94.49 | no |
| 125438 | flagellated | motile2+ⓘ | no | 88.00 | yes |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes. | Seshadri R, Roux S, Huber KJ, Wu D, Yu S, Udwary D, Call L, Nayfach S, Hahnke RL, Pukall R, White JR, Varghese NJ, Webb C, Palaniappan K, Reimer LC, Sarda J, Bertsch J, Mukherjee S, Reddy TBK, Hajek PP, Huntemann M, Chen IA, Spunde A, Clum A, Shapiro N, Wu ZY, Zhao Z, Zhou Y, Evtushenko L, Thijs S, Stevens V, Eloe-Fadrosh EA, Mouncey NJ, Yoshikuni Y, Whitman WB, Klenk HP, Woyke T, Goker M, Kyrpides NC, Ivanova NN. | Cell Genom | 10.1016/j.xgen.2022.100213 | 2022 | |
| Genetics | Production of Epoxyketone Peptide-Based Proteasome Inhibitors by Streptomyces sp. BRA-346: Regulation and Biosynthesis. | Domingues Vieira B, Niero H, de Felicio R, Giolo Alves LF, Freitas Bazzano C, Sigrist R, Costa Furtado L, Felix Persinoti G, Veras Costa-Lotufo L, Barretto Barbosa Trivella D. | Front Microbiol | 10.3389/fmicb.2022.786008 | 2022 | |
| Wychimicins, a new class of spirotetronate polyketides from Actinocrispum wychmicini MI503-A4. | Kimura T, Umekita M, Hatano M, Hayashi C, Sawa R, Igarashi M | J Antibiot (Tokyo) | 10.1038/s41429-022-00560-4 | 2022 | ||
| Phylogeny | Actinocrispum wychmicini gen. nov., sp. nov., a novel member of the family Pseudonocardiaceae, isolated from soil. | Hatano M, Kinoshita N, Igarashi M, Nomoto A | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001429 | 2016 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #24457 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45934 |
| #24979 | M. K. Hatano, Naoko,Igarashi, Masayuki,Nomoto, Akio: Actinocrispum wychmicini gen. nov., sp. nov., a novel member of the family Pseudonocardiaceae, isolated from soil. IJSEM 66: 4779 - 4784 2016 ( DOI 10.1099/ijsem.0.001429 , PubMed 27535579 ) |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #68379 | Automatically annotated from API Coryne . |
| #68382 | Automatically annotated from API zym . |
| #69454 | Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
You found an error in BacDive? Please tell us about it!
Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.
Successfully sent
If you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive132668.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data