Actinocrispum wychmicini MI503-A4 | Type strain | DSM 45934, NBRC 109632

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Caption:

Plates (553, ISP2, ISP3, ISP4, ISP5, ISP7)

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

Culture medium

Yeast extract-malt extract agar (ISP2)

Culture medium growth

Culture medium

Oatmeal agar (ISP3)

Culture medium growth

Culture medium

Inorganic salts-starch agar (ISP4)

Culture medium growth

Culture medium

Glycerol-asparagine agar (ISP5)

Culture medium growth

Culture medium

Tyrosine Agar (ISP7)

Culture medium growth

Culture medium

soil extract agar

Culture medium growth

Culture medium

water agar

Culture medium growth

Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24457]	growth	28 °C
[Ref.: #24979]	growth	20.0-34.0 °C
[Ref.: #24979]	optimum	27 °C

	pH	Kind of pH		pH
[Ref.: #24979]			optimum	7
[Ref.: #24979]			growth	5.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24979]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %97.9

What are isolation sources categories?

Ability of spore formation

	Salt		Salt conc.
[Ref.: #24979]	NaCl	growth	0.0-3.0	%(w/v)
[Ref.: #24979]	NaCl	optimum	0	%(w/v)
[Ref.: #69454]	NaCl	growth	0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24979]	adenine ChEBI	-	hydrolysis
[Ref.: #69454]	arabinose ChEBI	-	growth
[Ref.: #24979]	benzoate ChEBI	-	assimilation
[Ref.: #24979]	casein	+	hydrolysis
[Ref.: #24979]	cellobiose ChEBI	+	builds acid from
[Ref.: #69454]	cellulose ChEBI	-	growth
[Ref.: #24979]	citrate ChEBI	+	assimilation
[Ref.: #24979]	D-fructose ChEBI	+	builds acid from
[Ref.: #24979]	D-fructose ChEBI	+	assimilation
[Ref.: #24979]	D-galactose ChEBI	+	builds acid from
[Ref.: #24979]	D-glucose ChEBI	+	assimilation
[Ref.: #24979]	D-glucose ChEBI	+	builds acid from
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #24979]	D-mannitol ChEBI	+	assimilation
[Ref.: #24979]	D-mannitol ChEBI	+	builds acid from
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #24979]	D-mannose ChEBI	+	builds acid from
[Ref.: #24979]	D-ribose ChEBI	+	builds acid from
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #24979]	D-xylose ChEBI	+	assimilation
[Ref.: #24979]	D-xylose ChEBI	+	builds acid from
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #24979]	esculin ChEBI	+	hydrolysis
[Ref.: #68379]	esculin ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69454]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69454]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #24979]	hypoxanthine ChEBI	+	hydrolysis
[Ref.: #69454]	inositol ChEBI	+	growth
[Ref.: #24979]	L-rhamnose ChEBI	+	assimilation
[Ref.: #24979]	L-tyrosine ChEBI	+	hydrolysis
[Ref.: #24979]	lactose ChEBI	+	builds acid from
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #24979]	maltose ChEBI	+	builds acid from
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69454]	mannose ChEBI	+	growth
[Ref.: #24979]	melibiose ChEBI	+	builds acid from
[Ref.: #24979]	myo-inositol ChEBI	+	assimilation
[Ref.: #24979]	myo-inositol ChEBI	+	builds acid from
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #24979]	raffinose ChEBI	+	assimilation
[Ref.: #24979]	raffinose ChEBI	+	builds acid from
[Ref.: #69454]	raffinose ChEBI	-	growth
[Ref.: #24979]	rhamnose ChEBI	+	builds acid from
[Ref.: #69454]	rhamnose ChEBI	+	growth
[Ref.: #24979]	starch ChEBI	+	hydrolysis
[Ref.: #24979]	succinate ChEBI	+	assimilation
[Ref.: #24979]	sucrose ChEBI	+	builds acid from
[Ref.: #24979]	sucrose ChEBI	+	assimilation
[Ref.: #69454]	sucrose ChEBI	+/-	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #24979]	trehalose ChEBI	+	builds acid from
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #24979]	xanthine ChEBI	-	hydrolysis
[Ref.: #69454]	xylose ChEBI	+/-	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym, API Coryne
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym, API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym, API Coryne
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68379]	beta-glucosidase	-	3.2.1.21	* from API Coryne
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym, API Coryne
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym, API Coryne
[Ref.: #68379]	pyrazinamidase	+	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69454]	3947	-	+	+	+	-	+	+	+	-	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69454]	6131	not determinedn.d.	+	+	+	+/-	+	+	+	+	+	+	+/-	+	+	-	+	+	+	+	+/-

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	butanoate fermentation	100	4 of 4
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	4-hydroxymandelate degradation	100	9 of 9
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	threonine metabolism	100	10 of 10
[Ref.: #66794]	molybdenum cofactor biosynthesis	100	9 of 9
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	Entner Doudoroff pathway	100	10 of 10
[Ref.: #66794]	glycogen metabolism	100	5 of 5
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	urea cycle	100	13 of 13
[Ref.: #66794]	resorcinol degradation	100	2 of 2
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	phenol degradation	100	20 of 20
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	phenylmercury acetate degradation	100	2 of 2
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	3-chlorocatechol degradation	100	5 of 5
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	kanosamine biosynthesis II	100	2 of 2
[Ref.: #66794]	cellulose degradation	100	5 of 5
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	reductive acetyl coenzyme A pathway	100	7 of 7
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	glycolate and glyoxylate degradation	100	6 of 6
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	phenylacetate degradation (aerobic)	100	5 of 5
[Ref.: #66794]	NAD metabolism	94.44	17 of 18
[Ref.: #66794]	flavin biosynthesis	93.33	14 of 15
[Ref.: #66794]	phenylalanine metabolism	92.31	12 of 13
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	proline metabolism	90.91	10 of 11
[Ref.: #66794]	purine metabolism	89.36	84 of 94
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	d-mannose degradation	88.89	8 of 9
[Ref.: #66794]	vitamin B12 metabolism	88.24	30 of 34
[Ref.: #66794]	isoleucine metabolism	87.5	7 of 8
[Ref.: #66794]	dTDPLrhamnose biosynthesis	87.5	7 of 8
[Ref.: #66794]	tryptophan metabolism	86.84	33 of 38
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	aclacinomycin biosynthesis	85.71	6 of 7
[Ref.: #66794]	glutathione metabolism	85.71	12 of 14
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	citric acid cycle	85.71	12 of 14
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	ubiquinone biosynthesis	85.71	6 of 7
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	tetrahydrofolate metabolism	85.71	12 of 14
[Ref.: #66794]	vitamin B1 metabolism	84.62	11 of 13
[Ref.: #66794]	alanine metabolism	82.76	24 of 29
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	pentose phosphate pathway	81.82	9 of 11
[Ref.: #66794]	metabolism of disaccharids	81.82	9 of 11
[Ref.: #66794]	factor 420 biosynthesis	80	4 of 5
[Ref.: #66794]	myo-inositol biosynthesis	80	8 of 10
[Ref.: #66794]	ethylmalonyl-CoA pathway	80	4 of 5
[Ref.: #66794]	propionate fermentation	80	8 of 10
[Ref.: #66794]	4-hydroxyphenylacetate degradation	80	8 of 10
[Ref.: #66794]	pyrimidine metabolism	80	36 of 45
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	hydrogen production	80	4 of 5
[Ref.: #66794]	histidine metabolism	79.31	23 of 29
[Ref.: #66794]	arginine metabolism	79.17	19 of 24
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	polyamine pathway	78.26	18 of 23
[Ref.: #66794]	allantoin degradation	77.78	7 of 9
[Ref.: #66794]	degradation of hexoses	77.78	14 of 18
[Ref.: #66794]	methionine metabolism	76.92	20 of 26
[Ref.: #66794]	lysine metabolism	76.19	32 of 42
[Ref.: #66794]	cyclohexanol degradation	75	3 of 4
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	CMP-KDO biosynthesis	75	3 of 4
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	oxidative phosphorylation	73.63	67 of 91
[Ref.: #66794]	3-phenylpropionate degradation	73.33	11 of 15
[Ref.: #66794]	cysteine metabolism	72.22	13 of 18
[Ref.: #66794]	degradation of sugar acids	72	18 of 25
[Ref.: #66794]	tyrosine metabolism	71.43	10 of 14
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	coenzyme M biosynthesis	70	7 of 10
[Ref.: #66794]	androgen and estrogen metabolism	68.75	11 of 16
[Ref.: #66794]	degradation of pentoses	67.86	19 of 28
[Ref.: #66794]	lipid metabolism	67.74	21 of 31
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	selenocysteine biosynthesis	66.67	4 of 6
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	66.67	2 of 3
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	carnitine metabolism	62.5	5 of 8
[Ref.: #66794]	degradation of sugar alcohols	62.5	10 of 16
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	61.54	8 of 13
[Ref.: #66794]	gallate degradation	60	3 of 5
[Ref.: #66794]	lipoate biosynthesis	60	3 of 5
[Ref.: #66794]	daunorubicin biosynthesis	55.56	5 of 9
[Ref.: #66794]	nitrate assimilation	55.56	5 of 9
[Ref.: #66794]	carotenoid biosynthesis	54.55	12 of 22
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	aminopropanol phosphate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	catecholamine biosynthesis	50	2 of 4
[Ref.: #66794]	vitamin E metabolism	50	2 of 4
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	47.06	8 of 17
[Ref.: #66794]	phenylpropanoid biosynthesis	46.15	6 of 13
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	lipid A biosynthesis	44.44	4 of 9
[Ref.: #66794]	arachidonic acid metabolism	44.44	8 of 18
[Ref.: #66794]	mevalonate metabolism	42.86	3 of 7
[Ref.: #66794]	benzoyl-CoA degradation	42.86	3 of 7
[Ref.: #66794]	ascorbate metabolism	40.91	9 of 22
[Ref.: #66794]	arachidonate biosynthesis	40	2 of 5
[Ref.: #66794]	bacilysin biosynthesis	40	2 of 5
[Ref.: #66794]	D-cycloserine biosynthesis	40	2 of 5
[Ref.: #66794]	vitamin B6 metabolism	36.36	4 of 11
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	chlorophyll metabolism	33.33	6 of 18
[Ref.: #66794]	methanogenesis from CO2	33.33	4 of 12
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	alginate biosynthesis	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24457]	Sample type/isolated from	soil
[Ref.: #24457]	Geographic location (country and/or sea, region)	Aomori Prefecture, Kuroishi
[Ref.: #24457]	Country	Japan
[Ref.: #24457]	Country ISO 3 Code	JPN
[Ref.: #24457]	Continent	Asia

[Ref.: #24979]	Enrichment culture	agar plates
[Ref.: #24979]	Enrichment culture composition	containing 12.5 g glycerol, 1.0 g arginine, 1.0 g K2HPO4 , 1.0 g NaCl, 0.5 g MgSO4.7H2O, 20 g agar (Becton & Dickinson) in 1 l deionized water (pH 7.0)
[Ref.: #24979]	Enrichment culture duration	14 days
[Ref.: #24979]	Enrichment culture temperature	27 ̊C
[Ref.: #24979]	Isolation/enrichment procedure	dilution plating technique
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

[Ref.: #69479]

Global distribution of 16S sequence AB738044 (>99% sequence identity) for Kibdelosporangium from Microbeatlas

Aquatic Samples
Soil Samples	137
Animal Samples	1
Plant Samples	2
Total Samples	140

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24457]	Kibdelosporangium sp. MI503-A4 gene for 16S ribosomal RNA, partial sequence	AB738044	1480	GenBank ENA	1213861 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Actinocrispum wychmicini DSM 45934	GCA_004345645	scaffold	GenBank ENA	1213861 tax ID	*
[Ref.: #66792]	Actinocrispum wychmicini strain DSM 45934	1213861.3	wgs	PATRIC	1213861 tax ID	*
[Ref.: #66792]	Actinocrispum wychmicini DSM 45934	2799112271	draft	JGI IMG/M	1213861 tax ID	*

[Ref.: #24979]	GC-content	70.3-71.1 mol%	high performance liquid chromatography (HPLC)
[Ref.: #24457]	GC-content	71±0.7 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Actinocrispum wychmicini DSM 45934 NCBI: GCA_004345645.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	yes	87.201	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	96.609	yes
[Ref.: #125438]	aerobic	aerobicⓘ	yes	86.946	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	yes	71.729	yes
[Ref.: #125438]	thermophile	thermophilicⓘ	no	94.494	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	88	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Actinocrispum wychmicini DSM 45934 NCBI: GCA_004345645
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	97.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	positive	99.6
[Ref.: #125439]	BacteriaNet	motilityⓘ	no	94.6
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	yes	87.6

Availability in culture collections External links