Name: Thermodesulfatator autotrophicus S606
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132647

Type strain:

Species: Thermodesulfatator autotrophicus

Strain Designation: S606

Culture col. no.: DSM 101864, MCCC 1A01871

Strain history: <- K. Alain, IUEM, Univ. Brest, Plouzané, France; S606 <- J. Cao {2015}

NCBI tax ID(s): 1795632 (species)

SI-ID 398234

DSM 101864

Section

Thermodesulfatator autotrophicus S606 is an obligate anaerobe, chemolithoautotroph, hyperthermophilic bacterium that was isolated from sulfide from a deep-sea chimney wall, depth of 2771 m.

Gram-negative
motile
rod-shaped
chemolithoautotroph
hyperthermophilic
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Thermodesulfobacteriota*
	Class	*Thermodesulfobacteria*
	Order	*Thermodesulfobacteriales*
	Family	*Thermodesulfobacteriaceae*
	Genus	*Thermodesulfatator*
	Species	**Thermodesulfatator autotrophicus**
	Full Scientific Name (LPSN)	Thermodesulfatator autotrophicus Lai et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #24932]	Gram stain	negative

[Ref.: #24932]	Cell length	1.0-1.8 µm

[Ref.: #24932]	Cell width	0.5-0.7 µm

[Ref.: #24932]	Cell shape	rod-shaped

[Ref.: #24932]	Motility	yes

[Ref.: #24932]	Flagellum arrangement	monotrichous, polar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24436]

Culture medium

DESULFONAUTICUS MEDIUM (DSMZ Medium 383b)

[Ref.: #24436]

Culture medium growth

[Ref.: #24436]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24436]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24436]	growth	65 °C
[Ref.: #24932]	growth	50.0-80.0 °C
[Ref.: #24932]	optimum	65.0-70.0 °C

[Ref.: #24436]	Temperature range	thermophilic
[Ref.: #24932]	Temperature range	hyperthermophilic
[Ref.: #24932]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #24932]			optimum	6.5-7.0
[Ref.: #24932]			growth	5.5-8.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #24932]

Oxygen tolerance

obligate anaerobe

[Ref.: #24932]

Nutrition type

chemolithoautotroph

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #24932]		NaCl		growth	1.5-4.5	%
[Ref.: #24932]		NaCl		optimum	2.5-3.0	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #24932]	elemental sulfur ChEBI	-	electron acceptor
[Ref.: #24932]	methylamine ChEBI	-	carbon source
[Ref.: #24932]	nitrate ChEBI	-	reduction
[Ref.: #24932]	peptone	-	carbon source
[Ref.: #24932]	sulfate ChEBI	+	electron acceptor
[Ref.: #24932]	sulfate ChEBI	+	reduction
[Ref.: #24932]	sulfite ChEBI	-	electron acceptor
[Ref.: #24932]	thiosulfate ChEBI	-	electron acceptor
[Ref.: #24932]	yeast extract	-	carbon source

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24436]	Sample type/isolated from	sulfide from a deep-sea chimney wall, depth of 2771 m
[Ref.: #24436]	Geographic location (country and/or sea, region)	Indian Ocean, site JL-Dive90-S01
[Ref.: #24436]	Country	International waters
[Ref.: #24436]	Geographic location	-38.3000°/50.0833°

[Ref.: #24932]	Sample type/isolated from	deep-sea hydrothermal vent sulfide sample collected at a depth of 2764 m from a chimney wall
[Ref.: #24932]	Enrichment culture	SO4PNsalts medium
[Ref.: #24932]	Enrichment culture duration	5 days
[Ref.: #24932]	Enrichment culture temperature	60 ̊C
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Condition	#Sulfuric	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24436]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24436]	Thermodesulfatator autotrophicus strain S606 16S ribosomal RNA gene, partial sequence	KU681513	1514	ENA	1795632 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermodesulfatator autotrophicus S606	GCA_001642325	contig	GenBank	1795632 tax ID	*
[Ref.: #66792]	Thermodesulfatator autotrophicus S606	2744054635	draft	JGI IMG/M	1795632 tax ID	*

[Ref.: #24932]	GC-content	43.1 mol%	genome sequence analysis
[Ref.: #24436]	GC-content	43.1 mol%	sequence analysis

Availability in culture collections External links

[Ref.: #24436]

Culture collection no.

DSM 101864, MCCC 1A01871

[Ref.: #90960]

SI-ID 398234

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermodesulfatator autotrophicus sp. nov., a thermophilic sulfate-reducing bacterium from the Indian Ocean.	Lai Q, Cao J, Dupont S, Shao Z, Jebbar M, Alain K	Int J Syst Evol Microbiol	10.1099/ijsem.0.001297	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24436

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101864

#24932

Q. C. Lai, Junwei,Dupont, Samuel,Shao, Zongze,Jebbar, Mohamed,Alain, Karine: Thermodesulfatator autotrophicus sp. nov., a thermophilic sulfate-reducing bacterium from the Indian Ocean. IJSEM 66: 3978 - 3982 2016 ( DOI 10.1099/ijsem.0.001297 , PubMed 27405298 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90960

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398234.1 )

* These data were automatically processed and therefore are not curated

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