Name: Brucella sp. 141012304
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132641

Type strain:

Species: Brucella sp.

Strain Designation: 141012304

Culture col. no.: DSM 103976

Strain history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; 141012304

NCBI tax ID(s): 2735893 (species)

SI-ID 406062

DSM 103976

Special Collections

DSMZ

Other strains from Brucella sp.

Section

When using BacDive for research please cite our paper

Brucella sp. 141012304 is a mesophilic bacterium that was isolated from gills from a bluespotted ribbontail ray Taeniura lymma.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Hyphomicrobiales*
	Family	*Brucellaceae*
	Genus	*Brucella*
	Full Scientific Name (LPSN)	Brucella Meyer and Shaw 1920 (Approved Lists 1980)

Synonym

Ochrobactrum

Information on morphological and physiological properties Morphology

[Ref.: #125438]	Gram stain	negative Confidence in %97.5
[Ref.: #125439]	Gram stain	negative Confidence in %99.2

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24430]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #24430]

Culture medium growth

[Ref.: #24430]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24430]

Culture medium composition

expand / minimize

[Ref.: #24430]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #24430]

Culture medium growth

[Ref.: #24430]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24430]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24430]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #125439]

Oxygen tolerance

aerobe Confidence in %92

[Ref.: #125439]

Ability of spore formation

no Confidence in %98.1

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH, API 20NE
[Ref.: #68377]	urea ChEBI	+	hydrolysis	* from API NH, API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH, API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH, API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	-	3.1.3.1	* from API NH
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68377]	beta-galactosidase	-	3.2.1.23	* from API NH
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68377]	beta-lactamase	-	3.5.2.6	* from API NH
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68377]	gamma-glutamyltransferase	+	2.3.2.2	* from API NH
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #68377]	lipase	-		* from API NH
[Ref.: #68377]	proline-arylamidase	+	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68369]	urease	+	3.5.1.5	* from API 20NE, API NH
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #24430]	27612	+	-	-	-	+	-	-	-	+	+	+	-	+	+	-	-	+	+/-	-	-	+

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #24430]	6598	-	+	+/-	+/-	+/-	+	+	-	-	-	+	+	-
[Ref.: #24430]	6597	-	+	+/-	+/-	+/-	+/-	+	-	-	-	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24430]	Sample type/isolated from	gills from a bluespotted ribbontail ray Taeniura lymma
[Ref.: #24430]	Host species	Taeniura lymma
[Ref.: #24430]	Geographic location (country and/or sea, region)	Frankfurt
[Ref.: #24430]	Country	Germany
[Ref.: #24430]	Country ISO 3 Code	DEU
[Ref.: #24430]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Tunicata
#Host Body-Site	#Organ	#Vascular system

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Brucella sp. 141012304	1885919.3	complete	PATRIC	1885919 tax ID	*
[Ref.: #66792]	Brucella sp. DSM 103976	2735893.3	wgs	PATRIC	2735893 tax ID	*
[Ref.: #66792]	Brucella sp. DSM 103976	2861315819	draft	JGI IMG/M	2735893 tax ID	*
[Ref.: #66792]	Brucella sp. 141012304	2751185951	complete	JGI IMG/M	1885919 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Brucella sp. 141012304 PATRIC: 1885919.3
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.5	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	95.528	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	87.8	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	82.487	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	95.981	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	50.383	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Brucella sp. 141012304 PATRIC: 1885919.3
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.1
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	68.3
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.2
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	92

Availability in culture collections External links

[Ref.: #24430]

Culture collection no.

DSM 103976

[Ref.: #90954]

SI-ID 406062

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24430

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103976

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68377

Automatically annotated from API NH .

#90954

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID406062.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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