Undibacterium danionis E3/4 | Type strain | DSM 102221, CCM 8677, CIP 111017

Culture medium

Reasoner's 2A agar (R2A)

Culture medium growth

Culture medium

PYE agar

Culture medium growth

Culture medium

R2A MEDIUM (DSMZ Medium 830)

Culture medium growth

Medium recipe at MediaDive

Culture medium link

Culture medium composition

expand / minimize

Culture medium

CIP Medium 566

Culture medium growth

Medium recipe provided by DSMZ

Culture medium link

Culture medium

CIP Medium 72

Culture medium growth

Medium recipe provided by DSMZ

Culture medium link

Culture medium

Malt agar

Culture medium growth

Culture medium

LB (Luria-Bertani) MEDIUM

Culture medium growth

Culture medium

CASO

Culture medium growth

Culture medium

Trypticase Soy Agar (TSA)

Culture medium growth

Culture medium

Columbia agar with sheep blood

Culture medium growth

Culture medium

glycine arginine

Culture medium growth

Culture medium

DEV

Culture medium growth

Culture medium

Nutrient agar (NA)

Culture medium growth

Culture medium

marine agars

Culture medium growth

Culture medium

MacConkey agar

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #24415]		growth	25 °C
[Ref.: #42164]		growth	25 °C
[Ref.: #43163]		optimum	28 °C
[Ref.: #43163]	inconsistent	growth	4 °C
[Ref.: #43163]	inconsistent	growth	15 °C
[Ref.: #43163]	no	growth	30 °C
[Ref.: #43163]		growth	20-28 °C

[Ref.: #24415]	Temperature range	mesophilic
[Ref.: #42164]	Temperature range	mesophilic
[Ref.: #43163]	Temperature range	mesophilic
[Ref.: #43163]	Temperature range	psychrophilic
[Ref.: #43163]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #43163]		growth	5.5-6.5
[Ref.: #43163]	inconsistent	growth	7
[Ref.: #43163]	inconsistent	growth	7.5
[Ref.: #43163]	no	growth	5
[Ref.: #43163]	no	growth	8.5

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #43163]	Type of spore	spore
[Ref.: #43163]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43163]		NaCl		growth	0-1.0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43163]	acetate ChEBI	-	assimilation
[Ref.: #43163]	adipate ChEBI	-	assimilation
[Ref.: #43163]	amygdalin ChEBI	-	builds acid from
[Ref.: #43163]	arabinose ChEBI	-	assimilation
[Ref.: #43163]	arbutin ChEBI	-	builds acid from
[Ref.: #43163]	cellobiose ChEBI	-	builds acid from
[Ref.: #43163]	citrate ChEBI	-	assimilation
[Ref.: #43163]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43163]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43163]	D-fructose ChEBI	-	builds acid from
[Ref.: #43163]	D-galactose ChEBI	-	builds acid from
[Ref.: #43163]	D-glucose ChEBI	+	builds acid from
[Ref.: #43163]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43163]	D-mannitol ChEBI	-	builds acid from
[Ref.: #43163]	D-mannose ChEBI	+	builds acid from
[Ref.: #43163]	D-ribose ChEBI	-	builds acid from
[Ref.: #43163]	D-ribose ChEBI	-	assimilation
[Ref.: #43163]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43163]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43163]	D-xylose ChEBI	-	builds acid from
[Ref.: #43163]	decanoate ChEBI	-	assimilation
[Ref.: #43163]	erythritol ChEBI	-	builds acid from
[Ref.: #43163]	esculin ChEBI	+	hydrolysis
[Ref.: #43163]	esculin ferric citrate	-	builds acid from
[Ref.: #43163]	fucose ChEBI	-	assimilation
[Ref.: #43163]	galactitol ChEBI	-	builds acid from
[Ref.: #43163]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43163]	glucose ChEBI	+	assimilation
[Ref.: #43163]	glycogen ChEBI	-	builds acid from
[Ref.: #43163]	inulin ChEBI	-	builds acid from
[Ref.: #43163]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43163]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43163]	L-fucose ChEBI	-	builds acid from
[Ref.: #43163]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43163]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43163]	L-xylose ChEBI	-	builds acid from
[Ref.: #43163]	lactose ChEBI	-	builds acid from
[Ref.: #43163]	malate ChEBI	-	builds acid from
[Ref.: #43163]	maltose ChEBI	+	builds acid from
[Ref.: #43163]	maltose ChEBI	+	assimilation
[Ref.: #43163]	mannitol ChEBI	-	assimilation
[Ref.: #43163]	melezitose ChEBI	-	builds acid from
[Ref.: #43163]	melibiose ChEBI	-	builds acid from
[Ref.: #43163]	melibiose ChEBI	-	assimilation
[Ref.: #43163]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from
[Ref.: #43163]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43163]	methyl alpha-D-xylopyranoside	-	builds acid from
[Ref.: #43163]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43163]	myo-inositol ChEBI	-	assimilation
[Ref.: #43163]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43163]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43163]	nitrate ChEBI	+	reduction
[Ref.: #43163]	phenylacetate ChEBI	-	assimilation
[Ref.: #43163]	potassium 2-dehydro-D-gluconate	-	builds acid from
[Ref.: #43163]	potassium 5-dehydro-D-gluconate	-	builds acid from
[Ref.: #43163]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43163]	raffinose ChEBI	-	builds acid from
[Ref.: #43163]	ribitol ChEBI	-	builds acid from
[Ref.: #43163]	salicin ChEBI	-	builds acid from
[Ref.: #43163]	salicin ChEBI	-	assimilation
[Ref.: #43163]	sodium citrate ChEBI	-	assimilation
[Ref.: #43163]	sorbitol ChEBI	-	assimilation
[Ref.: #43163]	starch ChEBI	-	builds acid from
[Ref.: #43163]	sucrose ChEBI	-	builds acid from
[Ref.: #43163]	sucrose ChEBI	-	assimilation
[Ref.: #43163]	trehalose ChEBI	-	builds acid from
[Ref.: #43163]	turanose ChEBI	-	builds acid from
[Ref.: #43163]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43163]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43163]	acid phosphatase	+	3.1.3.2
[Ref.: #43163]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43163]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43163]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43163]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43163]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43163]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43163]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43163]	beta-galactosidase	-	3.2.1.23
[Ref.: #43163]	beta-glucosidase	-	3.2.1.21
[Ref.: #43163]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43163]	catalase	-	1.11.1.6
[Ref.: #43163]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43163]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43163]	esterase (C 4)	-
[Ref.: #43163]	esterase Lipase (C 8)	+/-
[Ref.: #43163]	leucine arylamidase	+	3.4.11.1
[Ref.: #43163]	lipase (C 14)	-
[Ref.: #43163]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43163]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43163]	trypsin	+/-	3.4.21.4
[Ref.: #43163]	urease	+	3.5.1.5
[Ref.: #43163]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

What are isolation sources categories?

Fatty acid	Percentage
C16:1ω7c / C16:1ω6c	52.3
C16:0	27.4
C10:0 3OH	9.6
C18:1ω6c / C18:1ω7c	5.8
C12:0	4.9

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24415]	Sample type/isolated from	zebrafish Danio rerio maintained in the laboratory
[Ref.: #24415]	Host species	Danio rerio
[Ref.: #24415]	Country	Chile
[Ref.: #24415]	Country ISO 3 Code	CHL
[Ref.: #24415]	Continent	Middle and South America

[Ref.: #43163]	Sample type/isolated from	a zebrafish maintained in E3 medium

[Ref.: #118856]	Sample type/isolated from	Zebrafish, Danio revio
[Ref.: #118856]	Country	Chile
[Ref.: #118856]	Country ISO 3 Code	CHL
[Ref.: #118856]	Continent	Middle and South America
[Ref.: #118856]	Isolation date	2014-01-02
* marker position based on {}

Isolation sources categories

#Engineered	#Laboratory	-
#Host	#Fishes	#Zebrafish

[Ref.: #69479]

Global distribution of 16S sequence KU695571 (>99% sequence identity) for Undibacterium danionis from Microbeatlas

Aquatic Samples	60
Soil Samples	2
Animal Samples	5
Plant Samples	2
Total Samples	69

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24415]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118856]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24415]	Undibacterium danionis strain E3/4 16S ribosomal RNA gene, partial sequence	KU695571	1478	ENA	1812100 tax ID

Availability in culture collections External links