Agromyces aureus (DSM 101731, LMG 29235, AR33)

Name: Agromyces aureus (DSM 101731, LMG 29235, AR33)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132611

Type strain

Strain Designation AR33

Culture col. no. DSM 101731 LMG 29235 AR33 JCM 32431

NCBI tax ID(s) 453304

Special Collections DSMZ JCM Literature strains

History <- G. Brader, AIT Austrian Inst. of Technology GmbH, Tulln, Austria; AR33 LMG 29235 <-- G. Brader; AIT Austrian Inst. of Technol., Austria; AR33.

Links

Agromyces aureus AR33 is a microaerophile, Gram-positive, motile bacterium that was isolated from rhizosphere of willow tree growing in a heavy-metal-contaminated soil of a former zinc/lead mining site.

Gram-positive motile rod-shaped microaerophile genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396805

LMG 29235,JCM 32431,DSM 101731

@ref 20215

Last LPSN update 2026-02-09 11:31:45

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Micrococcales

Family Microbacteriaceae

Genus Agromyces

Species Agromyces aureus

Full scientific name Agromyces aureus Corretto et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43114	positive	1.0-6.0 µm	0.3-0.5 µm	rod-shaped	monotrichous
125439	positive					97.7
125438						92.5
125438	positive					91.073

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43114	Landy medium
24400	RICH MEDIUM (DSMZ Medium 736)		Medium recipe at MediaDive	Name: RICH MEDIUM (DSMZ Medium 736) Composition: Agar 20.0 g/l Bacto peptone 10.0 g/l Yeast extract 5.0 g/l Malt extract 5.0 g/l Casamino acids 5.0 g/l Glycerol 2.0 g/l Meat extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Tween 80 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24400	positive	growth	28
43114	positive	optimum	28
43114	positive	growth	10-30
67770	positive	growth	28

Culture pH

@ref	Ability	Type	PH
43114	positive	optimum	6.5-7.5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43114	microaerophile
43114	aerobe
125438	aerobe	91.243
125439	obligate aerobe	97.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43114	NaCl	positive	growth	0-3 %(w/v)

Observation

67770

Observationquinones: MK-11, MK-10, MK-12

Tolerance

@ref	Compound	Concentration
43114	zinc	6.0 mM
43114	cadmium	1.0 mM

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43114	16708 ChEBI	adenine	-	hydrolysis
43114	27613 ChEBI	amygdalin	+	assimilation
43114	18305 ChEBI	arbutin	+	builds acid from
43114		casein	-	hydrolysis
43114	17108 ChEBI	D-arabinose	+	builds acid from
43114	18333 ChEBI	D-arabitol	-	builds acid from
43114	28847 ChEBI	D-fucose	-	builds acid from
43114	17634 ChEBI	D-glucose	+	assimilation
43114	62318 ChEBI	D-lyxose	-	builds acid from
43114	16899 ChEBI	D-mannitol	-	assimilation
43114	17924 ChEBI	D-sorbitol	-	builds acid from
43114	17924 ChEBI	D-sorbitol	-	assimilation
43114	16443 ChEBI	D-tagatose	-	builds acid from
43114	17113 ChEBI	erythritol	-	builds acid from
43114	4853 ChEBI	esculin	+	builds acid from
43114	16813 ChEBI	galactitol	-	builds acid from
43114	5291 ChEBI	gelatin	-	hydrolysis
43114	17754 ChEBI	glycerol	+	builds acid from
43114	28087 ChEBI	glycogen	+	builds acid from
43114	606565 ChEBI	hippurate	+	hydrolysis
43114	17368 ChEBI	hypoxanthine	+	hydrolysis
43114	30849 ChEBI	L-arabinose	+	assimilation
43114	18403 ChEBI	L-arabitol	-	builds acid from
43114	18287 ChEBI	L-fucose	+	builds acid from
43114	62345 ChEBI	L-rhamnose	+	assimilation
43114	17266 ChEBI	L-sorbose	-	builds acid from
43114	65328 ChEBI	L-xylose	-	builds acid from
43114	17306 ChEBI	maltose	+	builds acid from
43114	6731 ChEBI	melezitose	-	builds acid from
43114	28053 ChEBI	melibiose	-	assimilation
43114	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from
43114	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43114	17268 ChEBI	myo-inositol	-	builds acid from
43114	17268 ChEBI	myo-inositol	-	assimilation
43114	17632 ChEBI	nitrate	-	reduction
43114		potassium 2-dehydro-D-gluconate	-	builds acid from
43114	32032 ChEBI	potassium gluconate	-	builds acid from
43114	15963 ChEBI	ribitol	-	builds acid from
43114	28017 ChEBI	starch	+	builds acid from
43114	17992 ChEBI	sucrose	+	assimilation
43114	53424 ChEBI	tween 20	+	hydrolysis
43114	53426 ChEBI	tween 80	+	hydrolysis
43114	18186 ChEBI	tyrosine	+	hydrolysis
43114	16199 ChEBI	urea	-	hydrolysis
43114	15318 ChEBI	xanthine	+	hydrolysis
43114	17151 ChEBI	xylitol	-	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite	Sensitivity conc.	Resistance conc.
43114	48923	erythromycin	10 µg (disc)
43114	17833	gentamicin	30 µg (disc)
43114	6104	kanamycin	30 µg (disc)
43114	100147	nalidixic acid		30 µg (disc)
43114	7507	neomycin	30 µg (disc)
43114	28077	rifampicin	5 µg (disc)
43114	17076	streptomycin	10 µg (disc)

Metabolite production

@ref	Chebi-ID	Metabolite
43114	15688 ChEBI	acetoin
43114	16136 ChEBI	hydrogen sulfide
43114	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
43114	15688 ChEBI	acetoin	-

Enzymes

@ref	Value	Activity	Ec
43114	acid phosphatase	+	3.1.3.2
43114	alpha-fucosidase	-	3.2.1.51
43114	alpha-galactosidase	-	3.2.1.22
43114	alpha-glucosidase	+	3.2.1.20
43114	arginine decarboxylase	-	4.1.1.19
43114	beta-galactosidase	+	3.2.1.23
43114	beta-glucosidase	+	3.2.1.21
43114	esterase (C 4)	+
43114	esterase Lipase (C 8)	+
43114	leucine arylamidase	+	3.4.11.1
43114	lysine decarboxylase	-	4.1.1.18
43114	naphthol-AS-BI-phosphohydrolase	+
43114	ornithine decarboxylase	-	4.1.1.17
43114	trypsin	-	3.4.21.4
43114	tryptophan deaminase	+	4.1.99.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	#Heavy metal
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture temperature	Isolation procedure	Host species
24400	rhizosphere of willow tree (Salix caprea L.) growing in a heavy-metal-contaminated soil of a former zinc/lead mining site	Arnoldstein	Austria	AUT	Europe					Salix caprea
43114	Salix caprea L. rhizosphere samples	former zinc/lead mining and processing site, Arnoldstein	Austria	AUT	Europe	R2A (Difco)	containing 1 mM Cd(NO3)2, 1 mM Pb(NO3)2 and 1 mM Zn(NO3)2	21	serial dilution plating method
67770	Rhizosphere of willow trees (Salix caprea L.) grown in a former mining site in Arnoldstein		Austria	AUT	Europe					Salix caprea L.

Taxonmaps

69479

Global distribution of 16S sequence KU141339 (>99% sequence identity) for Agromyces from Microbeatlas

Aquatic Samples	89
Soil Samples	342
Animal Samples	154
Plant Samples	20
Total Samples	605

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24400	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM166048v1 assembly for Agromyces aureus AR33	complete	GCA_001660485	453304.3	2721755702	453304	92
67770	ASM974936v1 assembly for Agromyces aureus JCM 32431	contig	GCA_009749365	453304.8		453304	62.05

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
43114	Agromyces aureus strain AR33 16S ribosomal RNA variant 1 gene, complete sequence	KU141339	1518		453304
24400	Agromyces aureus strain AR33 16S ribosomal RNA variant 2 gene, complete sequence	KU141338	1520		453304

GC content

@ref	GC-content (mol%)	Method
24400	70.1	sequence analysis
67770	70.1	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Agromyces aureus AR33
NCBI: GCA_001660485

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	72.50	no
125439	motility	BacteriaNetⓘ	no	61.80	no
125439	gram_stain	BacteriaNetⓘ	positive	97.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Agromyces aureus AR33
NCBI: GCA_001660485.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.07	yes
125438	anaerobic	anaerobicⓘ	no	98.22	yes
125438	aerobic	aerobicⓘ	yes	91.24	no
125438	spore-forming	spore-formingⓘ	no	70.72	no
125438	thermophilic	thermophileⓘ	no	99.00	yes
125438	flagellated	motile2+ⓘ	no	92.50	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Agromyces aureus sp. nov., isolated from the rhizosphere of Salix caprea L. grown in a heavy-metal-contaminated soil.	Corretto E, Antonielli L, Sessitsch A, Compant S, Gorfer M, Kuffner M, Brader G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001260	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24400	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101731
#43114	Erika Corretto, Livio Antonielli, Angela Sessitsch, Stephane Compant, Markus Gorfer, Melanie Kuffner, Günter Brader: Agromyces aureus sp. nov., isolated from the rhizosphere of Salix caprea L. grown in a heavy-metal-contaminated soil. IJSEM 66: 3749 - 3754 2016 ( DOI 10.1099/ijsem.0.001260 , PubMed 27373912 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Agromyces aureus (DSM 101731, LMG 29235, AR33)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Observation

Tolerance

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001660485

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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