Name: Sulfurovum riftiae 1812E
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132576

Type strain:

Species: Sulfurovum riftiae

Strain Designation: 1812E

Culture col. no.: DSM 101780, JCM 30810

Strain history: C. Vetriani; Rutgers Univ., USA; 1812E.

NCBI tax ID(s): 1630136 (species)

SI-ID 401747

DSM 101780

Special Collections

Section

When using BacDive for research please cite our paper

Sulfurovum riftiae 1812E is an anaerobe, Gram-negative, motile bacterium that was isolated from tube of the deep-sea hydrothermal vent polychaete Riftia pachyptila.

Gram-negative
motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Epsilonproteobacteria*
	Order	*Campylobacterales*
	Family	*Helicobacteraceae*
	Genus	*Sulfurovum*
	Species	**Sulfurovum riftiae**
	Full Scientific Name (LPSN)	Sulfurovum riftiae Giovannelli et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43627]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.216

[Ref.: #43627]	Cell length	1.05 µm

[Ref.: #43627]	Cell width	0.4 µm

[Ref.: #43627]	Cell shape	rod-shaped

[Ref.: #43627]	Motility	yes

[Ref.: #43627]	Flagellum arrangement	polar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24365]

Culture medium

SULFURIMONAS MJ MEDIUM (DSMZ Medium 1011)

[Ref.: #24365]

Culture medium growth

[Ref.: #24365]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24365]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24365]	growth	35 °C
[Ref.: #43627]	growth	25-40 °C
[Ref.: #43627]	optimum	35 °C
[Ref.: #67770]	growth	35 °C

	pH	Kind of pH		pH
[Ref.: #43627]			optimum	6
[Ref.: #43627]			growth	5-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43627]

Oxygen tolerance

anaerobe

[Ref.: #125438]

Ability of spore formation

no Confidence in %91.28

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43627]		NaCl		growth	1.5-4	%(w/v)
[Ref.: #43627]		NaCl		optimum	3	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43627]	elemental sulfur ChEBI	+	electron donor
[Ref.: #43627]	nitrate ChEBI	+	electron acceptor
[Ref.: #43627]	thiosulfate ChEBI	+	electron donor

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #43627]		catalase	-	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24365]	Sample type/isolated from	tube of the deep-sea hydrothermal vent polychaete Riftia pachyptila
[Ref.: #24365]	Host species	Riftia pachyptila
[Ref.: #24365]	Geographic location (country and/or sea, region)	East Pacific Rise
[Ref.: #24365]	Country	International waters
[Ref.: #24365]	Geographic location	9.8167°/-104.2830°

[Ref.: #43627]	Sample type/isolated from	the tube of the deep-sea hydrothermal vent tubeworm Riftia pachyptila
[Ref.: #43627]	Geographic location (country and/or sea, region)	East Pacific Rise
[Ref.: #43627]	Geographic location	9.8160°/-104.2830°

[Ref.: #67770]	Sample type/isolated from	Tube of the deep-sea hydrothermal vent tubeworm Riftia pachyptila
[Ref.: #67770]	Host species	Riftia pachyptila
[Ref.: #67770]	Geographic location (country and/or sea, region)	East Pacific Rise
[Ref.: #67770]	Country	Pacific Ocean
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Aquatic	#Marine
#Host	#Invertebrates (Other)	#Annelida

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP896689 (>99% sequence identity) for Sulfurovum riftiae from Microbeatlas

Aquatic Samples	111
Soil Samples	3
Animal Samples
Plant Samples
Total Samples	114

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24365]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24365]	Sulfurovum riftiae strain 1812E 16S ribosomal RNA gene, partial sequence	KP896689	1378	GenBank ENA	1630136 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Sulfurovum riftiae 1812E	GCA_001595645	contig	GenBank ENA	1630136 tax ID

[Ref.: #24365]

GC-content

47.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Sulfurovum riftiae 1812E NCBI: GCA_001595645.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.216	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	58.603	no
[Ref.: #125438]	aerobic	aerobicⓘ	no	69.553	yes
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	91.28	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	82.079	no
[Ref.: #125438]	motile2+	flagellatedⓘ	no	51.054	yes

Availability in culture collections External links

[Ref.: #24365]

Culture collection no.

DSM 101780, JCM 30810

[Ref.: #90893]

SI-ID 401747

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic epsilonproteobacterium isolated from the tube of the deep-sea hydrothermal vent polychaete Riftia pachyptila.	Giovannelli D, Chung M, Staley J, Starovoytov V, Le Bris N, Vetriani C	Int J Syst Evol Microbiol	10.1099/ijsem.0.001106	2016	*
Phylogeny	Sulfurovum indicum sp. nov., a novel hydrogen- and sulfur-oxidizing chemolithoautotroph isolated from a deep-sea hydrothermal plume in the Northwestern Indian Ocean.	Xie S, Wang S, Li D, Shao Z, Lai Q, Wang Y, Wei M, Han X, Jiang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.004748	2021	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24365

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101780

#43627

Donato Giovannelli, Matthew Chung, Justin Staley, Valentin Starovoytov, Nadine Le Bris, Costantino Vetriani: Sulfurovum riftiae sp. nov., a mesophilic, thiosulfate-oxidizing, nitrate-reducing chemolithoautotrophic epsilonproteobacterium isolated from the tube of the deep-sea hydrothermal vent polychaete Riftia pachyptila. IJSEM 66: 2697 - 2701 2016 ( DOI 10.1099/ijsem.0.001106 , PubMed 27116914 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90893

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401747.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

* These data were automatically processed and therefore are not curated

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