Name: Filimonas zeae 772
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132574

Type strain:

Species: Filimonas zeae

Strain Designation: 772

Culture col. no.: DSM 100760, CGMCC 1.15290

Strain history: <- J. L. Gao, Beijing Academy of Agriculture and Forestry Science; 772

NCBI tax ID(s): 1737353 (species)

SI-ID 401437

DSM 100760

Section

Filimonas zeae 772 is an aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from surface-sterilized root tissue of maize plant.

colony-forming
filament-shaped
Gram-negative
motile
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Filimonas*
	Species	**Filimonas zeae**
	Full Scientific Name (LPSN)	Filimonas zeae Gao et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43949]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #43949]	Cell length	2.9-14.6 µm

[Ref.: #43949]	Cell width	0.2-0.4 µm

[Ref.: #43949]	Cell shape	filament-shaped

[Ref.: #43949]	Motility	yes

[Ref.: #43949]	Flagellum arrangement	gliding

[Ref.: #43949]	Colony size	0.5 mm
[Ref.: #43949]	Colony color	yellowish
[Ref.: #43949]	Colony shape	circular
[Ref.: #43949]	Incubation period	4 days
[Ref.: #43949]	Cultivation medium used	Luria-Bertani agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

CCM nitrogen free medium

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Tryptic soy agar

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Culture medium growth

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Culture medium

R2A MEDIUM (DSMZ Medium 830)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24363]	growth	28 °C
[Ref.: #43949]	growth	15-37 °C
[Ref.: #43949]	optimum	28-30 °C

[Ref.: #24363]	Temperature range	mesophilic
[Ref.: #43949]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43949]			optimum	6
[Ref.: #43949]			growth	5.0-7.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.965

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43949]		NaCl		optimum	5	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43949]	adipate ChEBI	-	assimilation
[Ref.: #43949]	alpha-D-glucose ChEBI	+	carbon source
[Ref.: #43949]	alpha-lactose ChEBI	+	carbon source
[Ref.: #43949]	amygdalin ChEBI	-	fermentation
[Ref.: #43949]	arabinose ChEBI	-	fermentation
[Ref.: #43949]	casein	-	hydrolysis
[Ref.: #43949]	cellobiose ChEBI	+	carbon source
[Ref.: #43949]	citrate ChEBI	-	carbon source
[Ref.: #43949]	D-galactose ChEBI	+	carbon source
[Ref.: #43949]	D-galacturonic acid ChEBI	+	carbon source
[Ref.: #43949]	D-glucose ChEBI	-	fermentation
[Ref.: #43949]	D-glucose ChEBI	+	assimilation
[Ref.: #43949]	D-glucuronate ChEBI	+	carbon source
[Ref.: #43949]	D-mannitol ChEBI	-	assimilation
[Ref.: #43949]	D-mannitol ChEBI	-	carbon source
[Ref.: #43949]	D-mannitol ChEBI	-	fermentation
[Ref.: #43949]	D-mannose ChEBI	+	carbon source
[Ref.: #43949]	D-sorbitol ChEBI	-	fermentation
[Ref.: #43949]	decanoate ChEBI	-	assimilation
[Ref.: #43949]	dna ChEBI	-	hydrolysis
[Ref.: #43949]	esculin ChEBI	+	hydrolysis
[Ref.: #43949]	gamma-cyclodextrin ChEBI	+	carbon source
[Ref.: #43949]	gelatin ChEBI	+	carbon source
[Ref.: #43949]	gelatin ChEBI	+	hydrolysis
[Ref.: #43949]	gentiobiose ChEBI	+	carbon source
[Ref.: #43949]	glucose ChEBI	-	fermentation
[Ref.: #43949]	glycerol 3-phosphate ChEBI	-	carbon source
[Ref.: #43949]	glycine-proline ChEBI	+	carbon source
[Ref.: #43949]	L-arabinose ChEBI	-	fermentation
[Ref.: #43949]	L-galactonic acid gamma-lactone ChEBI	-	carbon source
[Ref.: #43949]	L-rhamnose ChEBI	-	fermentation
[Ref.: #43949]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43949]	malate ChEBI	-	assimilation
[Ref.: #43949]	maltose ChEBI	+	carbon source
[Ref.: #43949]	melibiose ChEBI	-	fermentation
[Ref.: #43949]	melibiose ChEBI	+	carbon source
[Ref.: #43949]	methyl beta-D-glucopyranoside ChEBI	+	carbon source
[Ref.: #43949]	methyl pyruvate ChEBI	-	carbon source
[Ref.: #43949]	myo-inositol ChEBI	-	fermentation
[Ref.: #43949]	N-acetylglucosamine ChEBI	-	assimilation
[Ref.: #43949]	nitrate ChEBI	-	reduction
[Ref.: #43949]	pectin ChEBI	+	carbon source
[Ref.: #43949]	phenylacetate ChEBI	-	assimilation
[Ref.: #43949]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43949]	salicin ChEBI	+	carbon source
[Ref.: #43949]	sodium citrate ChEBI	-	assimilation
[Ref.: #43949]	starch ChEBI	-	hydrolysis
[Ref.: #43949]	sucrose ChEBI	-	carbon source
[Ref.: #43949]	sucrose ChEBI	-	fermentation
[Ref.: #43949]	tetrazolium blue ChEBI	+	carbon source
[Ref.: #43949]	tetrazolium violet ChEBI	+	carbon source
[Ref.: #43949]	trehalose ChEBI	+	carbon source
[Ref.: #43949]	tyrosine ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43949]	acetoin ChEBI	no
[Ref.: #43949]	hydrogen sulfide ChEBI	no
[Ref.: #43949]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43949]	6-phospho-beta-galactosidase	+	3.2.1.85
[Ref.: #43949]	acid phosphatase	+	3.1.3.2
[Ref.: #43949]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43949]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #43949]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43949]	alpha-galactosidase	+	3.2.1.22
[Ref.: #43949]	alpha-glucosidase	+	3.2.1.20
[Ref.: #43949]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43949]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43949]	beta-galactosidase	+	3.2.1.23
[Ref.: #43949]	beta-glucosidase	+	3.2.1.21
[Ref.: #43949]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43949]	catalase	+	1.11.1.6
[Ref.: #43949]	cystine arylamidase	+	3.4.11.3
[Ref.: #43949]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43949]	esterase (C 4)	+
[Ref.: #43949]	esterase Lipase (C 8)	+
[Ref.: #43949]	gelatinase	-
[Ref.: #43949]	leucine arylamidase	+	3.4.11.1
[Ref.: #43949]	lipase (C 14)	-
[Ref.: #43949]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43949]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #43949]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43949]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43949]	trypsin	+	3.4.21.4
[Ref.: #43949]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43949]	urease	-	3.5.1.5
[Ref.: #43949]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43949]

Fatty acid	Percentage
C15:0 iso	23.8
C15:1 iso G	23.6
C16:1ω5c	9.6
C16:0	9.2
C17:0 iso 3OH	6.7
C15:0 iso 2OH / C16:1ω7c	6.2
C16:0 3OH	3.1
C14:0	2
C15:0 iso 3OH	1.5
C16:0 2OH	1
C15:0 2OH	1
C13:1 AT 12-13	1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24363]	Sample type/isolated from	surface-sterilized root tissue of maize plant
[Ref.: #24363]	Geographic location (country and/or sea, region)	Beijing, Fangshan District
[Ref.: #24363]	Country	China
[Ref.: #24363]	Country ISO 3 Code	CHN
[Ref.: #24363]	Continent	Asia

[Ref.: #43949]	Sample type/isolated from	surface-sterilized root tissue of maize planted in the Fangshan District of Beijing, China
[Ref.: #43949]	Geographic location (country and/or sea, region)	Fangshan District of Beijing
[Ref.: #43949]	Country	China
[Ref.: #43949]	Country ISO 3 Code	CHN
[Ref.: #43949]	Continent	Asia
[Ref.: #43949]	Enrichment culture	CCM nitrogen free medium
[Ref.: #43949]	Enrichment culture duration	3 days
[Ref.: #43949]	Enrichment culture temperature	28 ̊C
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KR610522 (>99% sequence identity) for Filimonas from Microbeatlas

Aquatic Samples	457
Soil Samples	823
Animal Samples	336
Plant Samples	262
Total Samples	1878

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24363]	Filimonas zeae strain 772 16S ribosomal RNA gene, partial sequence	KR610522	1408	ENA	1737353 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Filimonas zeae CGMCC 1.15290	GCA_014641615	scaffold	GenBank	1737353 tax ID	*
[Ref.: #66792]	Filimonas zeae strain CGMCC 1.15290	1737353.3	wgs	PATRIC	1737353 tax ID	*
[Ref.: #66792]	Filimonas zeae DSM 100760	2861385466	draft	JGI IMG/M	1737353 tax ID	*

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GC-content

44.9 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Filimonas zeae CGMCC 1.15290 NCBI: GCA_014641615.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Filimonas zeae CGMCC 1.15290 NCBI: GCA_014641615.1
[Ref.: #69480]	flagellated	no	97.341	yes
[Ref.: #69480]	gram-positive	no	97.582	no
[Ref.: #69480]	anaerobic	no	99.029	no
[Ref.: #69480]	aerobic	yes	87.721	no
[Ref.: #69480]	halophile	no	96.634	no
[Ref.: #69480]	spore-forming	no	92.443	no
[Ref.: #69480]	thermophile	no	99.402	yes
[Ref.: #69480]	glucose-util	yes	88.939	no
[Ref.: #69480]	motile	no	91.293	no
[Ref.: #69480]	glucose-ferment	no	88.799	no

Availability in culture collections External links

[Ref.: #24363]

Culture collection no.

DSM 100760, CGMCC 1.15290

[Ref.: #90891]

SI-ID 401437

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Filimonas zeae sp. nov., an endophytic bacterium isolated from maize root.	Gao JL, Sun P, Wang XM, Qiu TL, Lv FY, Yang MM, Lu M, Sun JG	Int J Syst Evol Microbiol	10.1099/ijsem.0.001116	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24363

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100760

#43949

Jun-Lian Gao, Pengbo Sun, Xu-Ming Wang, Tian-Lei Qiu, Fan-Yang Lv, Ming-Ming Yang, Mengzhu Lu, Jian-Guang Sun: Filimonas zeae sp. nov., an endophytic bacterium isolated from maize root. IJSEM 66: 2730 - 2734 2016 ( DOI 10.1099/ijsem.0.001116 , PubMed 27118116 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90891

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401437.1 )

* These data were automatically processed and therefore are not curated

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Filimonas zeae CGMCC 1.15290

Filimonas zeae CGMCC 1.15290

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