Name: Peribacillus loiseleuriae FJAT-27997
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132573

Type strain:

Species: Peribacillus loiseleuriae

Strain Designation: FJAT-27997

Culture col. no.: DSM 101776, CCTCC AB 2015285

Strain history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-27997

NCBI tax ID(s): 1679170 (species)

SI-ID 402410

DSM 101776

Section

Peribacillus loiseleuriae FJAT-27997 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from soil, rhizosphere of Loiseleuria.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Peribacillus*
	Species	**Peribacillus loiseleuriae**
	Full Scientific Name (LPSN)	Peribacillus loiseleuriae (Liu et al. 2016) Patel and Gupta 2020

Synonym

Bacillus loiseleuriae

Information on morphological and physiological properties Morphology

[Ref.: #43605]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43605]	Cell length	1.5-2.5 µm

[Ref.: #43605]	Cell width	0.8-1.3 µm

[Ref.: #43605]	Cell shape	rod-shaped

[Ref.: #43605]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.724

[Ref.: #43605]	Colony size	1-2 mm
[Ref.: #43605]	Colony color	White
[Ref.: #43605]	Colony shape	circular
[Ref.: #43605]	Incubation period	1 day
[Ref.: #43605]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43605]

Culture medium

Nutrient agar (NA)

[Ref.: #43605]

Culture medium growth

[Ref.: #24362]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #24362]

Culture medium growth

[Ref.: #24362]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24362]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24362]	growth	30 °C
[Ref.: #43605]	growth	20-35 °C
[Ref.: #43605]	optimum	30 °C

[Ref.: #24362]	Temperature range	mesophilic
[Ref.: #43605]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43605]			optimum	7
[Ref.: #43605]			growth	6-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43605]

Oxygen tolerance

aerobe

[Ref.: #43605]	Spore description	Ellipsoidal endospores are located centrally
[Ref.: #43605]	Type of spore	endospore
[Ref.: #43605]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #43605]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43605]		NaCl		growth	0-3	%(w/v)
[Ref.: #43605]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43605]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43605]	amygdalin ChEBI	-	builds acid from
[Ref.: #43605]	amygdalin ChEBI	-	carbon source
[Ref.: #43605]	amygdalin ChEBI	-	nitrogen source
[Ref.: #43605]	arabinose ChEBI	-	carbon source
[Ref.: #43605]	arabinose ChEBI	-	nitrogen source
[Ref.: #43605]	arbutin ChEBI	+	builds acid from
[Ref.: #43605]	citrate ChEBI	+	assimilation
[Ref.: #43605]	D-fucose ChEBI	-	builds acid from
[Ref.: #43605]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43605]	esculin ChEBI	+	builds acid from
[Ref.: #43605]	fructose ChEBI	+	builds acid from
[Ref.: #43605]	galactose ChEBI	-	builds acid from
[Ref.: #43605]	gelatin ChEBI	-	hydrolysis
[Ref.: #43605]	gentiobiose ChEBI	-	builds acid from
[Ref.: #43605]	gluconate ChEBI	-	builds acid from
[Ref.: #43605]	glucose ChEBI	-	carbon source
[Ref.: #43605]	glucose ChEBI	-	nitrogen source
[Ref.: #43605]	glycerol ChEBI	-	builds acid from
[Ref.: #43605]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43605]	lactose ChEBI	+	builds acid from
[Ref.: #43605]	maltose ChEBI	+	builds acid from
[Ref.: #43605]	mannitol ChEBI	+	builds acid from
[Ref.: #43605]	mannose ChEBI	-	carbon source
[Ref.: #43605]	mannose ChEBI	-	nitrogen source
[Ref.: #43605]	melezitose ChEBI	-	carbon source
[Ref.: #43605]	melezitose ChEBI	-	nitrogen source
[Ref.: #43605]	melibiose ChEBI	+	builds acid from
[Ref.: #43605]	methyl D-glucoside ChEBI	+	builds acid from
[Ref.: #43605]	myo-inositol ChEBI	-	carbon source
[Ref.: #43605]	myo-inositol ChEBI	-	nitrogen source
[Ref.: #43605]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43605]	N-acetylglucosamine ChEBI	-	builds acid from
[Ref.: #43605]	nitrate ChEBI	+	reduction
[Ref.: #43605]	raffinose ChEBI	+	builds acid from
[Ref.: #43605]	rhamnose ChEBI	-	carbon source
[Ref.: #43605]	rhamnose ChEBI	-	nitrogen source
[Ref.: #43605]	ribose ChEBI	+	builds acid from
[Ref.: #43605]	sorbose ChEBI	-	carbon source
[Ref.: #43605]	sorbose ChEBI	-	nitrogen source
[Ref.: #43605]	sucrose ChEBI	-	carbon source
[Ref.: #43605]	sucrose ChEBI	-	nitrogen source
[Ref.: #43605]	sucrose ChEBI	+	builds acid from
[Ref.: #43605]	trehalose ChEBI	+	builds acid from
[Ref.: #43605]	turanose ChEBI	-	builds acid from
[Ref.: #43605]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43605]	acetoin ChEBI	no
[Ref.: #43605]	hydrogen sulfide ChEBI	no
[Ref.: #43605]	indole ChEBI	yes

	Physiological tests	Metabolite	Voges-Proskauer-test
[Ref.: #43605]		acetoin ChEBI	-

	Enzyme	Enzyme activity	EC number
[Ref.: #43605]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43605]	beta-galactosidase	-	3.2.1.23
[Ref.: #43605]	catalase	+	1.11.1.6
[Ref.: #43605]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43605]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43605]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43605]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43605]	urease	+	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	denitrification	100	2 of 2
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	propionate fermentation	100	10 of 10
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	aspartate and asparagine metabolism	100	9 of 9
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	ethanol fermentation	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	sulfopterin metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	95.45	21 of 22
[Ref.: #66794]	leucine metabolism	92.31	12 of 13
[Ref.: #66794]	vitamin B1 metabolism	92.31	12 of 13
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	valine metabolism	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	flavin biosynthesis	86.67	13 of 15
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	glutamate and glutamine metabolism	85.71	24 of 28
[Ref.: #66794]	purine metabolism	85.11	80 of 94
[Ref.: #66794]	pyrimidine metabolism	84.44	38 of 45
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	metabolism of amino sugars and derivatives	80	4 of 5
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	creatinine degradation	80	4 of 5
[Ref.: #66794]	glycine betaine biosynthesis	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	Entner Doudoroff pathway	80	8 of 10
[Ref.: #66794]	alanine metabolism	79.31	23 of 29
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	molybdenum cofactor biosynthesis	77.78	7 of 9
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	ppGpp biosynthesis	75	3 of 4
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	non-pathway related	73.68	28 of 38
[Ref.: #66794]	proline metabolism	72.73	8 of 11
[Ref.: #66794]	vitamin B6 metabolism	72.73	8 of 11
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	glycolysis	70.59	12 of 17
[Ref.: #66794]	starch degradation	70	7 of 10
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	d-mannose degradation	66.67	6 of 9
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	tryptophan metabolism	65.79	25 of 38
[Ref.: #66794]	methionine metabolism	65.38	17 of 26
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	dTDPLrhamnose biosynthesis	62.5	5 of 8
[Ref.: #66794]	histidine metabolism	62.07	18 of 29
[Ref.: #66794]	phenylpropanoid biosynthesis	61.54	8 of 13
[Ref.: #66794]	urea cycle	61.54	8 of 13
[Ref.: #66794]	lipid metabolism	61.29	19 of 31
[Ref.: #66794]	oxidative phosphorylation	60.44	55 of 91
[Ref.: #66794]	glycogen metabolism	60	3 of 5
[Ref.: #66794]	4-hydroxyphenylacetate degradation	60	6 of 10
[Ref.: #66794]	3-chlorocatechol degradation	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	isoprenoid biosynthesis	57.69	15 of 26
[Ref.: #66794]	glutathione metabolism	57.14	8 of 14
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	lysine metabolism	54.76	23 of 42
[Ref.: #66794]	sulfate reduction	53.85	7 of 13
[Ref.: #66794]	polyamine pathway	52.17	12 of 23
[Ref.: #66794]	degradation of sugar acids	52	13 of 25
[Ref.: #66794]	degradation of pentoses	50	14 of 28
[Ref.: #66794]	lactate fermentation	50	2 of 4
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	selenocysteine biosynthesis	50	3 of 6
[Ref.: #66794]	phenylmercury acetate degradation	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	cholesterol biosynthesis	45.45	5 of 11
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	nitrate assimilation	44.44	4 of 9
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	ascorbate metabolism	36.36	8 of 22
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	35.29	6 of 17
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	allantoin degradation	33.33	3 of 9
[Ref.: #66794]	degradation of hexoses	33.33	6 of 18
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	4-hydroxymandelate degradation	33.33	3 of 9
[Ref.: #66794]	androgen and estrogen metabolism	31.25	5 of 16
[Ref.: #66794]	phosphatidylethanolamine bioynthesis	30.77	4 of 13
[Ref.: #66794]	coenzyme M biosynthesis	30	3 of 10
[Ref.: #66794]	phenol degradation	30	6 of 20
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	arachidonic acid metabolism	27.78	5 of 18
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	vitamin B12 metabolism	26.47	9 of 34
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24362]	Sample type/isolated from	soil, rhizosphere of Loiseleuria
[Ref.: #24362]	Host species	Loiseleuria
[Ref.: #24362]	Geographic location (country and/or sea, region)	Sichuan Province
[Ref.: #24362]	Country	China
[Ref.: #24362]	Country ISO 3 Code	CHN
[Ref.: #24362]	Continent	Asia

[Ref.: #43605]	Sample type/isolated from	rhizosphere soil of a Loiseleuria plant
[Ref.: #43605]	Geographic location (country and/or sea, region)	Sichuan province
[Ref.: #43605]	Country	China
[Ref.: #43605]	Country ISO 3 Code	CHN
[Ref.: #43605]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT362910 (>99% sequence identity) for Peribacillus from Microbeatlas

Aquatic Samples	135
Soil Samples	1379
Animal Samples	314
Plant Samples	37
Total Samples	1865

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24362]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24362]	Bacillus loiseleuriae strain FJAT-27997 16S ribosomal RNA gene, partial sequence	KT362910	1416	ENA	1679170 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Peribacillus loiseleuriae FJAT-27997	GCA_001183985	scaffold	GenBank	1679170 tax ID	*

[Ref.: #43605]	GC-content	37.54 mol%
[Ref.: #24362]	GC-content	37.54 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Peribacillus loiseleuriae FJAT-27997 NCBI: GCA_001183985.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Peribacillus loiseleuriae FJAT-27997 NCBI: GCA_001183985.1
[Ref.: #69480]	motile	yes	92.292	yes
[Ref.: #69480]	flagellated	yes	88.373	no
[Ref.: #69480]	gram-positive	yes	88.403	yes
[Ref.: #69480]	anaerobic	no	99.031	yes
[Ref.: #69480]	aerobic	yes	88.639	yes
[Ref.: #69480]	halophile	no	70.566	yes
[Ref.: #69480]	spore-forming	yes	94.353	yes
[Ref.: #69480]	glucose-util	yes	81.183	yes
[Ref.: #69480]	thermophile	no	99.688	no
[Ref.: #69480]	glucose-ferment	no	85.337	no

Availability in culture collections External links

[Ref.: #24362]

Culture collection no.

DSM 101776, CCTCC AB 2015285

[Ref.: #90890]

SI-ID 402410

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reclassification of Brevibacterium frigoritolerans DSM 8801(T) as Bacillus frigoritolerans comb. nov. Based on Genome Analysis.	Liu GH, Liu B, Wang JP, Che JM, Li PF	Curr Microbiol	10.1007/s00284-020-01964-x	2020	*
Phylogeny	Bacillus loiseleuriae sp. nov., isolated from rhizosphere soil from a loiseleuria plant.	Liu B, Liu GH, Zhu YJ, Wang JP, Che JM, Chen QQ, Chen Z	Int J Syst Evol Microbiol	10.1099/ijsem.0.001107	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24362

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101776

#43605

Bo Liu, Guo-Hong Liu, Yu-Jing Zhu, Jie-Ping Wang, Jian-Mei Che, Qian-Qian Chen, Zheng Chen: Bacillus loiseleuriae sp. nov., isolated from rhizosphere soil from a loiseleuria plant. IJSEM 66: 2678 - 2683 2016 ( DOI 10.1099/ijsem.0.001107 , PubMed 27117173 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90890

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402410.1 )

* These data were automatically processed and therefore are not curated

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