Name: Amycolatopsis benzoatilytica AK 16/65
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 13257

Type strain:

Species: Amycolatopsis benzoatilytica

Strain Designation: AK 16/65, N857

Culture col. no.: DSM 43387, ATCC 55165, CIP 109216, IMRU 1389, JCM 13851, ATCC 35165, KCTC 9414, KCTC 9421

Strain history: DSM 43387 <-- M. Goodfellow N857 <-- R. E. Gordon IMRU 1389 <-- J. Scharfen AK 16/65.

NCBI tax ID(s): 1089544 (strain), 346045 (species)

SI-ID 40897

ATCC 35164, ATCC 35165, DSM 43387, DSM 46075, IMET 7511, KCTC 9414, IMET 1389, KCTC 9421, ATCC 55165, JCM 13851, CIP 109216

Special Collections

Section

Amycolatopsis benzoatilytica AK 16/65 is a mesophilic bacterium that was isolated from from a patient with submandibular mycetoma.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis benzoatilytica**
	Full Scientific Name (LPSN)	Amycolatopsis benzoatilytica Majumdar et al. 2006

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #11004]

Caption:

Medium 553 28°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

GPHF-MEDIUM (DSMZ Medium 553)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #11004]			growth	28 °C
[Ref.: #67770]			growth	28 °C

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #11004]	Sample type/isolated from	from a patient with submandibular mycetoma
[Ref.: #11004]	Country	Czechoslovakia
[Ref.: #11004]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Patient with submandibular mycetoma
[Ref.: #67770]	Country	Czechoslovakia
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	-
#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY957506 (>99% sequence identity) for Amycolatopsis from Microbeatlas

Aquatic Samples	27
Soil Samples	640
Animal Samples	69
Plant Samples	156
Total Samples	892

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #11004]	Pathogenicity (human)	yes, in single cases
[Ref.: #11004]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #11004]	Amycolatopsis benzoatilytica strain DSM 43387 16S ribosomal RNA gene, partial sequence	AY957506	1417	GenBank ENA	346045 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Amycolatopsis benzoatilytica AK 16/65	GCA_000383915	scaffold	GenBank ENA	1089544 tax ID
[Ref.: #66792]	Amycolatopsis benzoatilytica AK 16/65	1089544.3	wgs	PATRIC	1089544 tax ID	*
[Ref.: #66792]	Amycolatopsis benzoatilytica strain DSM 43387	346045.5	plasmid	PATRIC	346045 tax ID	*
[Ref.: #66792]	Amycolatopsis benzoatilytica DSM 43387	2517287020	draft	JGI IMG/M	1089544 tax ID	*

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GC-content

70 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amycolatopsis benzoatilytica AK 16/65 PATRIC: 1089544.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	85.997	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.88	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	77.559	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	88.55	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.6	no

Availability in culture collections External links

[Ref.: #11004]

Culture collection no.

DSM 43387, ATCC 55165, CIP 109216, IMRU 1389, JCM 13851, ATCC 35165, KCTC 9414, KCTC 9421

[Ref.: #82461]

SI-ID 40897

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Nucleotide sequence of plasmid pA387 of Amycolatopsis benzoatilytica and construction of a conjugative shuttle vector.	Malhotra S, Majumdar S, Kumar M, Bhasin VK, Gartemann KH, Lal R	J Basic Microbiol	10.1002/jobm.200700326	2008	*
Phylogeny	Reclassification of Amycolatopsis orientalis DSM 43387 as Amycolatopsis benzoatilytica sp. nov.	Majumdar S, Prabhagaran SR, Shivaji S, Lal R	Int J Syst Evol Microbiol	10.1099/ijs.0.63766-0	2006	*

References

#11004

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 43387

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#82461

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40897.1 )

* These data were automatically processed and therefore are not curated

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