Name: Nocardioides pakistanensis DSM 29942
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132559

Type strain:

Species: Nocardioides pakistanensis

Culture col. no.: DSM 29942, JCM 30630, NCCP 1340

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; NCCP-1340.

NCBI tax ID(s): 1682732 (species)

SI-ID 402810

DSM 29942

Section

Nocardioides pakistanensis DSM 29942 is a mesophilic bacterium that was isolated from water from a hot water spring.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Nocardioidaceae*
	Genus	*Nocardioides*
	Species	**Nocardioides pakistanensis**
	Full Scientific Name (LPSN)	Nocardioides pakistanensis Amin et al. 2016

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24348]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24348]

Culture medium growth

[Ref.: #24348]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #24348]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24348]

Culture medium growth

[Ref.: #24348]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24348]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24348]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #24348]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-8(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24348]	Sample type/isolated from	water from a hot water spring
[Ref.: #24348]	Geographic location (country and/or sea, region)	Kotli, Tatta Pani (35° 47' N, 74° 54' E)
[Ref.: #24348]	Country	Pakistan
[Ref.: #24348]	Country ISO 3 Code	PAK
[Ref.: #24348]	Continent	Asia
[Ref.: #24348]	Geographic location	35.7833°/74.9000°

[Ref.: #67770]	Sample type/isolated from	Soil from Tatta Pani hot water spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kotli, Azad Jammu & Kashmir
[Ref.: #67770]	Country	Pakistan
[Ref.: #67770]	Country ISO 3 Code	PAK
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24348]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24348]	Nocardioides pakistanensis gene for 16S ribosomal RNA, partial sequence	LC065367	1498	ENA	1682732 tax ID

[Ref.: #24348]

GC-content

71.8 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24348]

Culture collection no.

DSM 29942, JCM 30630, NCCP 1340

[Ref.: #90876]

SI-ID 402810

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardioides pakistanensis sp. nov., isolated from a hot water spring of Tatta Pani in Pakistan.	Amin A, Ahmed I, Habib N, Abbas S, Xiao M, Hozzein WN, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-016-0711-8	2016	*
Phylogeny	Nocardioides speluncae sp. nov., a novel actinobacterium isolated from a karstic subterranean environment sample.	Fang BZ, Han MX, Jiao JY, Zhang XT, Xie YG, Hozzein WN, Alkhalifah DHM, Xiao M, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-018-01217-9	2019	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24348

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29942

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#90876

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402810.1 )

* These data were automatically processed and therefore are not curated

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