Name: Streptomyces indoligenes DSM 104005
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132536

Type strain:

Species: Streptomyces indoligenes

Culture col. no.: DSM 104005, CCTCC AA 2015010, KCTC 39611, TRM 43006

Strain history: <- CCTCC; CCTCC AA2015010

NCBI tax ID(s): 1764539 (species)

SI-ID 404274

DSM 104005

Special Collections

Section

When using BacDive for research please cite our paper

Streptomyces indoligenes DSM 104005 is an aerobe, Gram-positive bacterium that was isolated from rhizosphere soil of Populus euphratica.

Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces indoligenes**
	Full Scientific Name (LPSN)	Streptomyces indoligenes Luo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43964]	Gram stain	positive

[Ref.: #43964]	Motility	no

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	ISP 2 agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	ISP 4 agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	Czapek's agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	Nutrient agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	Gause's agar

[Ref.: #43964]	Pigment production	no
[Ref.: #43964]	Pigment name	diffusible pigments

Multimedia content

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Caption:

Medium 65 37°C

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

Czapek's agar

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Culture medium growth

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Culture medium

Gause's agar

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Culture medium growth

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Culture medium

ISP 2 agar

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Culture medium growth

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Culture medium

ISP 4 agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

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Culture medium

ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #24325]	growth	28 °C
[Ref.: #24325]	growth	37 °C
[Ref.: #43964]	growth	20-45 °C
[Ref.: #43964]	optimum	37 °C

	pH	Kind of pH		pH
[Ref.: #43964]			optimum	7.5
[Ref.: #43964]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43964]		NaCl		growth	0-5	%(w/v)
[Ref.: #43964]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43964]	cellulose ChEBI	+	hydrolysis
[Ref.: #43964]	chitosan ChEBI	+	carbon source
[Ref.: #43964]	D-fructose ChEBI	+	carbon source
[Ref.: #43964]	D-galactose ChEBI	+	carbon source
[Ref.: #43964]	D-mannitol ChEBI	-	carbon source
[Ref.: #43964]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43964]	gelatin ChEBI	-	hydrolysis
[Ref.: #43964]	glycine ChEBI	+	nitrogen source
[Ref.: #43964]	L-alanine 4-nitroanilide	+	nitrogen source
[Ref.: #43964]	L-arabinose ChEBI	+	carbon source
[Ref.: #43964]	L-arginine ChEBI	+	nitrogen source
[Ref.: #43964]	L-aspartate ChEBI	-	nitrogen source
[Ref.: #43964]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #43964]	L-cystine ChEBI	+	nitrogen source
[Ref.: #43964]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #43964]	L-glutamine ChEBI	+	nitrogen source
[Ref.: #43964]	L-histidine ChEBI	-	nitrogen source
[Ref.: #43964]	L-isoleucine ChEBI	-	nitrogen source
[Ref.: #43964]	L-leucine ChEBI	+	nitrogen source
[Ref.: #43964]	L-lysine ChEBI	-	nitrogen source
[Ref.: #43964]	L-methionine ChEBI	+	nitrogen source
[Ref.: #43964]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #43964]	L-proline ChEBI	+	nitrogen source
[Ref.: #43964]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43964]	L-serine ChEBI	+	nitrogen source
[Ref.: #43964]	L-sorbose ChEBI	+	carbon source
[Ref.: #43964]	L-tryptophan ChEBI	+	nitrogen source
[Ref.: #43964]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #43964]	L-valine ChEBI	+	nitrogen source
[Ref.: #43964]	malate ChEBI	-	carbon source
[Ref.: #43964]	maltose ChEBI	+	carbon source
[Ref.: #43964]	melezitose ChEBI	-	carbon source
[Ref.: #43964]	myo-inositol ChEBI	-	carbon source
[Ref.: #43964]	nitrate ChEBI	-	reduction
[Ref.: #43964]	raffinose ChEBI	-	carbon source
[Ref.: #43964]	ribose ChEBI	+	carbon source
[Ref.: #43964]	salicin ChEBI	-	carbon source
[Ref.: #43964]	starch ChEBI	+	hydrolysis
[Ref.: #43964]	xylitol ChEBI	-	carbon source
[Ref.: #43964]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43964]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43964]	catalase	+	1.11.1.6
[Ref.: #43964]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43964]	lipase	+
[Ref.: #43964]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24325]	Sample type/isolated from	rhizosphere soil of Populus euphratica
[Ref.: #24325]	Host species	Populus euphratica
[Ref.: #24325]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #24325]	Country	China
[Ref.: #24325]	Country ISO 3 Code	CHN
[Ref.: #24325]	Continent	Asia
[Ref.: #24325]	Geographic location	40.3667°/80.5000°

[Ref.: #43964]	Sample type/isolated from	rhizosphere soil of Populus euphratica in Xinjiang Province, north-west China
[Ref.: #43964]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #43964]	Country	China
[Ref.: #43964]	Country ISO 3 Code	CHN
[Ref.: #43964]	Continent	Asia
[Ref.: #43964]	Geographic location	40.3667°/80.5000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24325]	Streptomyces indoligenes strain TRM 43006 16S ribosomal RNA gene, partial sequence	KU195301	1402	GenBank ENA	1764539 tax ID

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GC-content

69 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

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Culture collection no.

DSM 104005, CCTCC AA 2015010, KCTC 39611, TRM 43006

[Ref.: #90862]

SI-ID 404274

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces indoligenes sp. nov., isolated from rhizosphere soil of Populus euphratica.	Luo X, Sun Y, Xie S, Wan C, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001049	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24325

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104005

#43964

Xiaoxia Luo, Yong Sun, Sinan Xie, Chuanxing Wan, Lili Zhang: Streptomyces indoligenes sp. nov., isolated from rhizosphere soil of Populus euphratica. IJSEM 66: 2424 - 2428 2016 ( DOI 10.1099/ijsem.0.001049 , PubMed 27031169 )

#90862

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404274.1 )

* These data were automatically processed and therefore are not curated

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