Name: Streptomyces indoligenes DSM 104005
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132536

Type strain:

Species: Streptomyces indoligenes

Culture col. no.: DSM 104005, CCTCC AA 2015010, KCTC 39611, TRM 43006

Strain history: <- CCTCC; CCTCC AA2015010

NCBI tax ID(s): 1764539 (species)

SI-ID 404274

DSM 104005

Section

Streptomyces indoligenes DSM 104005 is an aerobe, Gram-positive bacterium that was isolated from rhizosphere soil of Populus euphratica.

Gram-positive
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	**Streptomyces indoligenes**
	Full Scientific Name (LPSN)	Streptomyces indoligenes Luo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43964]	Gram stain	positive

[Ref.: #43964]	Motility	no

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	ISP 2 agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	ISP 4 agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	Czapek's agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	Nutrient agar

[Ref.: #43964]	Colony color	white to yellowish
[Ref.: #43964]	Cultivation medium used	Gause's agar

[Ref.: #43964]	Pigment production	no
[Ref.: #43964]	Pigment name	diffusible pigments

Multimedia content

[Ref.: #24325]

Caption:

Medium 65 37°C

[Ref.: #24325]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43964]

Culture medium

Czapek's agar

[Ref.: #43964]

Culture medium growth

[Ref.: #43964]

Culture medium

Gause's agar

[Ref.: #43964]

Culture medium growth

[Ref.: #43964]

Culture medium

ISP 2 agar

[Ref.: #43964]

Culture medium growth

[Ref.: #43964]

Culture medium

ISP 4 agar

[Ref.: #43964]

Culture medium growth

[Ref.: #43964]

Culture medium

Nutrient agar (NA)

[Ref.: #43964]

Culture medium growth

[Ref.: #24325]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #24325]

Culture medium growth

[Ref.: #24325]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24325]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24325]	growth	28 °C
[Ref.: #24325]	growth	37 °C
[Ref.: #43964]	growth	20-45 °C
[Ref.: #43964]	optimum	37 °C

[Ref.: #24325]	Temperature range	mesophilic
[Ref.: #43964]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43964]			optimum	7.5
[Ref.: #43964]			growth	6.0-10.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43964]

Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43964]		NaCl		growth	0-5	%(w/v)
[Ref.: #43964]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43964]	cellulose ChEBI	+	hydrolysis
[Ref.: #43964]	chitosan ChEBI	+	carbon source
[Ref.: #43964]	D-fructose ChEBI	+	carbon source
[Ref.: #43964]	D-galactose ChEBI	+	carbon source
[Ref.: #43964]	D-mannitol ChEBI	-	carbon source
[Ref.: #43964]	D-sorbitol ChEBI	-	carbon source
[Ref.: #43964]	gelatin ChEBI	-	hydrolysis
[Ref.: #43964]	glycine ChEBI	+	nitrogen source
[Ref.: #43964]	L-alanine 4-nitroanilide	+	nitrogen source
[Ref.: #43964]	L-arabinose ChEBI	+	carbon source
[Ref.: #43964]	L-arginine ChEBI	+	nitrogen source
[Ref.: #43964]	L-aspartate ChEBI	-	nitrogen source
[Ref.: #43964]	L-cysteine ChEBI	-	nitrogen source
[Ref.: #43964]	L-cystine ChEBI	+	nitrogen source
[Ref.: #43964]	L-glutamate ChEBI	-	nitrogen source
[Ref.: #43964]	L-glutamine ChEBI	+	nitrogen source
[Ref.: #43964]	L-histidine ChEBI	-	nitrogen source
[Ref.: #43964]	L-isoleucine ChEBI	-	nitrogen source
[Ref.: #43964]	L-leucine ChEBI	+	nitrogen source
[Ref.: #43964]	L-lysine ChEBI	-	nitrogen source
[Ref.: #43964]	L-methionine ChEBI	+	nitrogen source
[Ref.: #43964]	L-phenylalanine ChEBI	+	nitrogen source
[Ref.: #43964]	L-proline ChEBI	+	nitrogen source
[Ref.: #43964]	L-rhamnose ChEBI	+	carbon source
[Ref.: #43964]	L-serine ChEBI	+	nitrogen source
[Ref.: #43964]	L-sorbose ChEBI	+	carbon source
[Ref.: #43964]	L-tryptophan ChEBI	+	nitrogen source
[Ref.: #43964]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #43964]	L-valine ChEBI	+	nitrogen source
[Ref.: #43964]	malate ChEBI	-	carbon source
[Ref.: #43964]	maltose ChEBI	+	carbon source
[Ref.: #43964]	melezitose ChEBI	-	carbon source
[Ref.: #43964]	myo-inositol ChEBI	-	carbon source
[Ref.: #43964]	nitrate ChEBI	-	reduction
[Ref.: #43964]	raffinose ChEBI	-	carbon source
[Ref.: #43964]	ribose ChEBI	+	carbon source
[Ref.: #43964]	salicin ChEBI	-	carbon source
[Ref.: #43964]	starch ChEBI	+	hydrolysis
[Ref.: #43964]	xylitol ChEBI	-	carbon source
[Ref.: #43964]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43964]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43964]	catalase	+	1.11.1.6
[Ref.: #43964]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43964]	lipase	+
[Ref.: #43964]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24325]	Sample type/isolated from	rhizosphere soil of Populus euphratica
[Ref.: #24325]	Host species	Populus euphratica
[Ref.: #24325]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #24325]	Country	China
[Ref.: #24325]	Country ISO 3 Code	CHN
[Ref.: #24325]	Continent	Asia
[Ref.: #24325]	Geographic location	40.3667°/80.5000°

[Ref.: #43964]	Sample type/isolated from	rhizosphere soil of Populus euphratica in Xinjiang Province, north-west China
[Ref.: #43964]	Geographic location (country and/or sea, region)	Xinjiang Province
[Ref.: #43964]	Country	China
[Ref.: #43964]	Country ISO 3 Code	CHN
[Ref.: #43964]	Continent	Asia
[Ref.: #43964]	Geographic location	40.3667°/80.5000°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24325]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24325]	Streptomyces indoligenes strain TRM 43006 16S ribosomal RNA gene, partial sequence	KU195301	1402	ENA	1764539 tax ID

[Ref.: #24325]

GC-content

69 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24325]

Culture collection no.

DSM 104005, CCTCC AA 2015010, KCTC 39611, TRM 43006

[Ref.: #90862]

SI-ID 404274

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces indoligenes sp. nov., isolated from rhizosphere soil of Populus euphratica.	Luo X, Sun Y, Xie S, Wan C, Zhang L	Int J Syst Evol Microbiol	10.1099/ijsem.0.001049	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24325

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 104005

#43964

Xiaoxia Luo, Yong Sun, Sinan Xie, Chuanxing Wan, Lili Zhang: Streptomyces indoligenes sp. nov., isolated from rhizosphere soil of Populus euphratica. IJSEM 66: 2424 - 2428 2016 ( DOI 10.1099/ijsem.0.001049 , PubMed 27031169 )

#90862

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404274.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Streptomyces indoligenes in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF