Name: Peptoniphilus catoniae M6.X2D
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132525

Type strain:

Species: Peptoniphilus catoniae

Strain Designation: M6.X2D

Culture col. no.: DSM 29874, CCUG 66798

Strain history: <- P. Lawson, Univ. Oklahoma, USA; M6.X2D

NCBI tax ID(s): 1660341 (species)

SI-ID 407711

DSM 29874, CCUG 66798

Section

Peptoniphilus catoniae M6.X2D is an obligate anaerobe, Gram-positive, coccus-shaped bacterium that forms circular colonies and was isolated from human faecal sample from a traditional Peruvian coastal community.

coccus-shaped
colony-forming
Gram-positive
obligate anaerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Peptoniphilus*
	Species	**Peptoniphilus catoniae**
	Full Scientific Name (LPSN)	Peptoniphilus catoniae Patel et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43660]	Gram stain	positive

[Ref.: #43660]	Cell length	1-5.3 µm

[Ref.: #43660]	Cell width	1-2 µm

[Ref.: #43660]	Cell shape	coccus-shaped

[Ref.: #43660]	Type of hemolysis	gamma
[Ref.: #43660]	Colony color	Beige
[Ref.: #43660]	Colony shape	circular
[Ref.: #43660]	Cultivation medium used	Blood agar

[Ref.: #63360]	Incubation period	2-3 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43660]

Culture medium

Blood agar

[Ref.: #43660]

Culture medium growth

[Ref.: #24314]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #24314]

Culture medium growth

[Ref.: #24314]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24314]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24314]	growth	37 °C
[Ref.: #43660]	growth	30-43 °C
[Ref.: #43660]	optimum	37 °C
[Ref.: #63360]	growth	37 °C

[Ref.: #24314]	Temperature range	mesophilic
[Ref.: #43660]	Temperature range	mesophilic
[Ref.: #63360]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43660]			optimum	6.5
[Ref.: #43660]			growth	6.5-9

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43660]	Oxygen tolerance	obligate anaerobe
[Ref.: #63360]	Oxygen tolerance	anaerobe

[Ref.: #43660]

Ability of spore formation

[Ref.: #43660]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43660]		NaCl		growth	0.5-2	%
[Ref.: #43660]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43660]	2-deoxyadenosine ChEBI	+/-	respiration
[Ref.: #43660]	2-oxobutanoate ChEBI	+/-	respiration
[Ref.: #43660]	2-oxopentanoate ChEBI	+/-	respiration
[Ref.: #68380]	arginine ChEBI	+	hydrolysis	* from API rID32A
[Ref.: #43660]	D-fructose ChEBI	+/-	respiration
[Ref.: #68380]	D-mannose ChEBI	-	fermentation	* from API rID32A
[Ref.: #43660]	fumarate ChEBI	+/-	respiration
[Ref.: #43660]	inosine ChEBI	+/-	respiration
[Ref.: #43660]	L-aspartate ChEBI	+/-	respiration
[Ref.: #43660]	L-fucose ChEBI	+/-	respiration
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #43660]	L-methionine ChEBI	+/-	respiration
[Ref.: #43660]	L-valine ChEBI	+/-	respiration
[Ref.: #43660]	malate ChEBI	+	respiration
[Ref.: #43660]	mannose ChEBI	-	builds acid from
[Ref.: #43660]	methyl pyruvate ChEBI	+	respiration
[Ref.: #43660]	nitrate ChEBI	-	reduction
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #43660]	palatinose ChEBI	+/-	respiration
[Ref.: #43660]	pyruvate ChEBI	+	respiration
[Ref.: #43660]	raffinose ChEBI	-	builds acid from
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #43660]	thymidine ChEBI	+/-	respiration
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #43660]	uridine ChEBI	+/-	respiration
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43660]		indole ChEBI	no
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #43660]	alanine arylamidase	-	3.4.11.2
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #43660]	alkaline phosphatase	-	3.1.3.1
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #43660]	alpha-arabinosidase	-	3.2.1.55
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #43660]	alpha-fucosidase	-	3.2.1.51
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #43660]	alpha-galactosidase	-	3.2.1.22
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #43660]	alpha-glucosidase	-	3.2.1.20
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #43660]	arginine arylamidase	-
[Ref.: #43660]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68380]	arginine dihydrolase	+	3.5.3.6	* from API rID32A
[Ref.: #43660]	beta-galactosidase	-	3.2.1.23
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #43660]	beta-glucosidase	-	3.2.1.21
[Ref.: #68380]	beta-glucosidase	-	3.2.1.21	* from API rID32A
[Ref.: #43660]	beta-glucuronidase	-	3.2.1.31
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #43660]	catalase	-	1.11.1.6
[Ref.: #43660]	glutamate decarboxylase	-	4.1.1.15
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #43660]	glutamyl-glutamate arylamidase	-
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #43660]	glycin arylamidase	-
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #43660]	histidine arylamidase	-
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #43660]	leucine arylamidase	-	3.4.11.1
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #43660]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #43660]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #43660]	phenylalanine arylamidase	-
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #43660]	proline-arylamidase	-	3.4.11.5
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #43660]	pyroglutamic acid arylamidase	-
[Ref.: #68380]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32A
[Ref.: #43660]	serine arylamidase	-
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #43660]	tyrosine arylamidase	-
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #43660]	urease	-	3.5.1.5
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43660]

Fatty acid	Percentage
C16:1ω6c / C16:1ω7c	51.4
C16:0	38.2
C10:02-OH	2.1
C10:0 3OH	1.9
C14:0 2OH	1.6
C12:0 / Unknown 10.98	1.6
C18:1ω6c / C18:1ω7c	1.3
C14:0	0.8
C18:0	0.5
C19:1ω6c / unknown 18.846	0.5

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #24314]	12866	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24314]	Sample type/isolated from	human faecal sample from a traditional Peruvian coastal community
[Ref.: #24314]	Geographic location (country and/or sea, region)	Ica region
[Ref.: #24314]	Country	Peru
[Ref.: #24314]	Country ISO 3 Code	PER
[Ref.: #24314]	Continent	Middle and South America

[Ref.: #43660]	Sample type/isolated from	freshly voided faecal samples obtained from one member of a traditional Peruvian community
[Ref.: #43660]	Geographic location (country and/or sea, region)	Peru
[Ref.: #43660]	Country	Peru
[Ref.: #43660]	Country ISO 3 Code	PER
[Ref.: #43660]	Continent	Middle and South America

[Ref.: #63360]	Sample type/isolated from	Human faeces
[Ref.: #63360]	Sampling date	2011-12-30
[Ref.: #63360]	Country	Peru
[Ref.: #63360]	Country ISO 3 Code	PER
[Ref.: #63360]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24314]	Peptoniphilus catoniae strain M6.X2D 16S ribosomal RNA gene, partial sequence	KR911910	1341	ENA	1660341 tax ID

[Ref.: #24314]

GC-content

34.4 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24314]

Culture collection no.

DSM 29874, CCUG 66798

[Ref.: #90851]

SI-ID 407711

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Peptoniphilus catoniae sp. nov., isolated from a human faecal sample from a traditional Peruvian coastal community.	Patel NB, Tito RY, Obregon-Tito AJ, O'Neal L, Trujillo-Villaroel O, Marin-Reyes L, Troncoso-Corzo L, Guija-Poma E, Lewis CM, Lawson PA	Int J Syst Evol Microbiol	10.1099/ijsem.0.000985	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24314

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29874

#43660

Nisha B. Patel, Raul Y. Tito, Alexandra J. Obregón-Tito, Lindsey O’Neal, Omar Trujillo-Villaroel, Luis Marin-Reyes, Luzmila Troncoso-Corzo, Emilio Guija-Poma, Cecil M. Lewis Jr, Paul A. Lawson: Peptoniphilus catoniae sp. nov., isolated from a human faecal sample from a traditional Peruvian coastal community. IJSEM 66: 2019 - 2024 2016 ( DOI 10.1099/ijsem.0.000985 , PubMed 26907921 )

#63360 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 66798

#68380

Automatically annotated from API rID32A .

#90851

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID407711.1 )

* These data were automatically processed and therefore are not curated

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