Amycolatopsis decaplanina (DSM 44594, JCM 12669, NRRL B-24209)

Name: Amycolatopsis decaplanina (DSM 44594, JCM 12669, NRRL B-24209)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13252

Type strain

Strain Designation FH 1845, NNRL B-24209

Culture col. no. DSM 44594 JCM 12669 NRRL B-24209 FH 1845 NCIMB 14255 2 more

NCBI tax ID(s) 1284240 208441

Special Collections DSMZ JCM CIP Wink compendium Literature strains

Links

Amycolatopsis decaplanina FH 1845 is an aerobe, spore-forming, mesophilic prokaryote that builds an aerial mycelium and produces antibiotic compounds.

antibiotic compound production spore-forming Gram-positive aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 97667

DSM 44594,NRRL B-24209,JCM 12669,CIP 108517

@ref 20215

Last LPSN update 2025-12-16 09:50:02

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis decaplanina

Full scientific name Amycolatopsis decaplanina Wink et al. 2004

Morphology

Cell morphology

@ref	Gram stain	Motility
29908	positive
118860	positive
125439	positive

Colony morphology

@ref	Colony color	Incubation period	Medium used
19680	Honey yellow	10-14 days	ISP 2
19680	Honey yellow	10-14 days	ISP 3
19680	Honey yellow	10-14 days	ISP 4
19680	Honey yellow	10-14 days	ISP 5
19680	Honey yellow	10-14 days	ISP 6
19680	Honey yellow	10-14 days	ISP 7

Multicellular morphology

@ref	Forms multicellular complex	Medium name
19680		ISP 2
19680		ISP 3
19680		ISP 4
19680		ISP 5
19680		ISP 6
19680		ISP 7

Pigmentation

29908

Productionyes

Multimedia

@ref:	11909
multimedia content:	DSM_44594.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_44594.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
11909	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
19680	ISP 2		Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes
19680	ISP 3		Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms:
19680	ISP 4		Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml
19680	ISP 5		Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes
19680	ISP 6		Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes
19680	ISP 7		Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes
40013	MEDIUM 116 - for Streptomyces, Nocardia, Streptosporangium and Mycobacterium chlorophenolicum		Distilled water make up to (1000.000 ml);Agar (20.000 g);Glucose (4.000g);Yeast extract (4.000 g);Malt extract (10.000 g)
118860	CIP Medium 116	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
11909	positive	growth	28	mesophilic
19680	positive	optimum	28	mesophilic
40013	positive	growth	30	mesophilic
67770	positive	growth	28	mesophilic
118860	positive	growth	25-37	mesophilic
118860	negative	growth	10
118860	negative	growth	41
118860	negative	growth	45

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
29908	aerobe
118860	obligate aerobe
125438	aerobe
125439	obligate aerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation
19680	Formation of sporangia like structures (pseudosporangia)	spore
29908

Compound production

@ref	Compound
11909	balhimycin
11909	decaplanin
19680	Decaplanin

Halophily

@ref	Salt	Growth	Tested relation	Concentration
19680	NaCl	positive	maximum	5 %
118860	NaCl	positive	growth	0-2 %
118860	NaCl		growth	4 %
118860	NaCl		growth	6 %
118860	NaCl		growth	8 %
118860	NaCl		growth	10 %

Observation

67770

Observationquinones: MK-8(H₄), MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity
19680	22599 ChEBI	arabinose	+
68368	29016 ChEBI	arginine	-	from API 20E
19680	62968 ChEBI	cellulose	-
118860	16947 ChEBI	citrate	-
68368	16947 ChEBI	citrate	-	from API 20E
118860	4853 ChEBI	esculin	-
19680	28757 ChEBI	fructose	+
29908	28757 ChEBI	fructose	+
68368	5291 ChEBI	gelatin	+	from API 20E
19680	17234 ChEBI	glucose	+
118860	606565 ChEBI	hippurate	+
29908	25017 ChEBI	leucine	+
68368	25094 ChEBI	lysine	-	from API 20E
19680	29864 ChEBI	mannitol	+
29908	29864 ChEBI	mannitol	+
19680	17268 ChEBI	myo-inositol	-
118860	17632 ChEBI	nitrate	-
118860	17632 ChEBI	nitrate	-
118860	16301 ChEBI	nitrite	-
68368	18257 ChEBI	ornithine	-	from API 20E
19680	16634 ChEBI	raffinose	-
19680	26546 ChEBI	rhamnose	-
19680	17992 ChEBI	sucrose	-
68368	27897 ChEBI	tryptophan	-	from API 20E
68368	16199 ChEBI	urea	+	from API 20E
19680	18222 ChEBI	xylose	-

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
67770		decaplanin
68368	16136 ChEBI	hydrogen sulfide	from API 20E
118860	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
118860	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+	from API 20E
118860	17234 ChEBI	glucose
68368	35581 ChEBI	indole		from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118860	alcohol dehydrogenase	-	1.1.1.1
29908	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
118860	amylase	-
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
118860	beta-galactosidase	-	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118860	caseinase	+	3.4.21.50
118860	catalase	+	1.11.1.6
118860	DNase	-
118860	gamma-glutamyltransferase	+	2.3.2.2
118860	gelatinase	+
68368	gelatinase	+		from API 20E
118860	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
118860	lipase	-
68382	lipase (C 14)	-		from API zym
118860	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118860	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
118860	oxidase	+
118860	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
118860	tween esterase	+
29908	urease	+	3.5.1.5
118860	urease	+	3.5.1.5
68368	urease	+	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
19680	+	-	-	-	-	-	+	-	-	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
19680	not determinedn.d.	+	-	-	-	+	+	-	+	+	+	+	-	+	-	+	+	+	-	-
118860	-	+	+	+	-	+	+	+	-	+	+	+	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
118860	not determinedn.d.	+	+	+	+	+	-	+	-	+	+	-	+	-	-	-	+	+	+	+	+	+	+	-	-	+	-	+	-	-	-	-	+	+	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	+	+	-	-	-	-	+	-	+	+	+	+	+	+	+	+	-	-	-	-	-	-	-	-	-	+	-	+	-	-	+	+	+	-	-	-	+	-	-	-	+	+	+	+	+	+	+	-	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
11909	soil sample	India	IND	Asia
67770	Soil	India	IND	Asia
118860	Environment, Soil sample	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence AJ508237 (>99% sequence identity) for Amycolatopsis from Microbeatlas

Aquatic Samples	30
Soil Samples	689
Animal Samples	79
Plant Samples	635
Total Samples	1433

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
11909	1	Risk group (German classification) According to TRBA 466
19680	1	Risk group (German classification) According to TRBA 466
118860	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	Whole genome assembly for Amycolatopsis decaplanina DSM 44594	contig	GCA_000342005	1284240.4	2545824682	1284240	61.52

Genome browser: GCA_000342005

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
11909	Amycolatopsis decaplanensis 16S rRNA gene, type strain DSM 44594T	AJ508237	1464		1284240

GC content

@ref	GC-content (mol%)	Method
67770	68.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Amycolatopsis decaplanina DSM 44594
NCBI: GCA_000342005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.80	no
125439	gram_stain	BacteriaNetⓘ	positive	96.30	no
125439	motility	BacteriaNetⓘ	no	79.10	no
125439	spore_formation	BacteriaNetⓘ	yes	56.70	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Amycolatopsis decaplanina DSM 44594
PATRIC: 1284240.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	87.50	no
125438	anaerobic	anaerobicⓘ	no	96.33	no
125438	spore-forming	spore-formingⓘ	yes	83.46	no
125438	aerobic	aerobicⓘ	yes	90.38	yes
125438	thermophilic	thermophileⓘ	no	96.88	yes
125438	flagellated	motile2+ⓘ	no	85.00	yes

Literature

Title	Authors	Journal	DOI	Year
A rare peptide scaffold in kineomicins, the glycopeptide antibiotics produced by Actinokineospora auranticolor DSM 44650.	Yushchuk O, Berini F, Zhong L, Ruckert-Reed C, Bernasconi E, Bartolone L, Busche T, Kalinowski J, Sussmuth RD, Marinelli F.	Commun Chem	10.1038/s42004-025-01534-x	2025
Glycopeptide Antibiotic Resistance Genes: Distribution and Function in the Producer Actinomycetes.	Yushchuk O, Binda E, Marinelli F.	Front Microbiol	10.3389/fmicb.2020.01173	2020
Genome neighborhood network reveals insights into enediyne biosynthesis and facilitates prediction and prioritization for discovery.	Rudolf JD, Yan X, Shen B.	J Ind Microbiol Biotechnol	10.1007/s10295-015-1671-0	2016
Characterization of the aurantimycin biosynthetic gene cluster and enhancing its production by manipulating two pathway-specific activators in Streptomyces aurantiacus JA 4570.	Zhao H, Wang L, Wan D, Qi J, Gong R, Deng Z, Chen W.	Microb Cell Fact	10.1186/s12934-016-0559-7	2016
Anti-Candida properties of urauchimycins from actinobacteria associated with trachymyrmex ants.	Mendes TD, Borges WS, Rodrigues A, Solomon SE, Vieira PC, Duarte MC, Pagnocca FC.	Biomed Res Int	10.1155/2013/835081	2013
Identification and characterization of two types of amino acid-regulated acetyltransferases in actinobacteria.	Lu YX, Liu XX, Liu WB, Ye BC.	Biosci Rep	10.1042/bsr20170157	2017
Identification of Comamonas testosteroni as an androgen degrader in sewage.	Chen YL, Wang CH, Yang FC, Ismail W, Wang PH, Shih CJ, Wu YC, Chiang YR.	Sci Rep	10.1038/srep35386	2016
Resistance to and accumulation of heavy metals by actinobacteria isolated from abandoned mining areas.	El Baz S, Baz M, Barakate M, Barakate M, Hassani L, Hassani L, El Gharmali A, Imziln B.	ScientificWorldJournal	10.1155/2015/761834	2015
Draft Genome Sequence of Amycolatopsis decaplanina Strain DSM 44594T.	Kaur N, Kumar S, Bala M, Raghava GP, Mayilraj S	Genome Announc	10.1128/genomeA.00138-13	2013
Amycolatopsis decaplanina sp. nov., a novel member of the genus with unusual morphology.	Wink J, Gandhi J, Kroppenstedt RM, Seibert G, Straubler B, Schumann P, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.02586-0	2004

References

#11909	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 44594
#19680	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#29908	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26280 (see below)
#40013	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118860	Collection of Institut Pasteur ; Curators of the CIP; CIP 108517
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Amycolatopsis decaplanina (DSM 44594, JCM 12669, NRRL B-24209)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Halophily

Observation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000342005

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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