Name: Anaerococcus nagyae UMCG-3741
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132506

Type strain:

Species: Anaerococcus nagyae

Strain Designation: UMCG-3741, ENR0686

Culture col. no.: DSM 101193, CCUG 69678

Strain history: <- A. Veloo, University Medical Center Utrecht, Dept. of Med. Microbiol., The Netherlands; ENR0686

NCBI tax ID(s): 1755241 (species)

SI-ID 408031

DSM 101193, CCUG 69678

Special Collections

DSMZ
CCUG

Section

Anaerococcus nagyae UMCG-3741 is an anaerobe, Gram-positive human pathogen that was isolated from human clinical specimen, blood culture.

Gram-positive
anaerobe
human pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptoniphilaceae*
	Genus	*Anaerococcus*
	Species	**Anaerococcus nagyae**
	Full Scientific Name (LPSN)	Anaerococcus nagyae Veloo et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24295]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #24295]

Culture medium growth

[Ref.: #24295]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24295]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24295]			growth	37 °C

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	-	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	raffinose ChEBI	-	fermentation	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	+	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	yes	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	+	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	-	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	-	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	-	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	-	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	-	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	-	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	-	4.1.1.15	* from API rID32A
[Ref.: #68380]	glutamyl-glutamate arylamidase	-		* from API rID32A
[Ref.: #68380]	glycin arylamidase	-		* from API rID32A
[Ref.: #68380]	histidine arylamidase	-		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	-		* from API rID32A
[Ref.: #68380]	leucine arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	-	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	pyrrolidonyl arylamidase	+	3.4.19.3	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	+	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #24295]	12900	-	-	-	-	-	-	+/-	-	-	-	+	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24295]	Sample type/isolated from	human clinical specimen, blood culture
[Ref.: #24295]	Geographic location (country and/or sea, region)	UMCG, Groningen
[Ref.: #24295]	Country	Netherlands
[Ref.: #24295]	Country ISO 3 Code	NLD
[Ref.: #24295]	Continent	Europe

[Ref.: #63645]	Sample type/isolated from	Blood culture,human
[Ref.: #63645]	Sampling date	2013-01-26
[Ref.: #63645]	Geographic location (country and/or sea, region)	Groningen
[Ref.: #63645]	Country	Netherlands
[Ref.: #63645]	Country ISO 3 Code	NLD
[Ref.: #63645]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Infection	#Patient	#Blood culture
#Infection	#Patient	#Specimen
#Host	#Human	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KU043522 (>99% sequence identity) for Anaerococcus nagyae subclade from Microbeatlas

Aquatic Samples	1425
Soil Samples	1044
Animal Samples	33033
Plant Samples	452
Total Samples	35954

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24295]	Pathogenicity (human)	yes, in single cases
[Ref.: #24295]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24295]	Anaerococcus nagyae strain ENR0686 16S ribosomal RNA gene, partial sequence	KU043522	1348	GenBank ENA	1755241 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerococcus nagyae DSM 101193	GCA_017874535	contig	GenBank ENA	1755241 tax ID	*
[Ref.: #66792]	Anaerococcus nagyae strain DSM 101193	1755241.71	wgs	PATRIC	1755241 tax ID	*
[Ref.: #66792]	Anaerococcus nagyae DSM 101193	2913559412	draft	JGI IMG/M	1755241 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerococcus nagyae strain DSM 101193 PATRIC: 1755241.71
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	81.225	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	85.715	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	77.25	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	92.063	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.04	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	84.978	no

Availability in culture collections External links

[Ref.: #24295]

Culture collection no.

DSM 101193, CCUG 69678

[Ref.: #90832]

SI-ID 408031

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerococcus nagyae sp. nov., isolated from human clinical specimens.	Veloo ACM, de Vries ED, Jean-Pierre H, van Winkelhoff AJ	Anaerobe	10.1016/j.anaerobe.2015.11.009	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24295

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101193

#63645 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 69678

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90832

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID408031.1 )

* These data were automatically processed and therefore are not curated

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Anaerococcus nagyae strain DSM 101193

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