Name: Paenibacillus ihumii AT5
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132501

Type strain:

Species: Paenibacillus ihumii

Strain Designation: AT5

Culture col. no.: DSM 100664, CSUR 1981, CSUR P1981

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; AT5 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

NCBI tax ID(s): 687436 (species)

SI-ID 396945

DSM 100664

Section

Paenibacillus ihumii AT5 is a spore-forming, mesophilic, motile bacterium that was isolated from human stool specimen, 33-year-old woman with morbid obesity.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus ihumii**
	Full Scientific Name (LPSN)	Paenibacillus ihumii Togo et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %96.724

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24290]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #24290]

Culture medium growth

[Ref.: #24290]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24290]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24290]			growth	30 °C

[Ref.: #24290]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24290]	Sample type/isolated from	human stool specimen, 33-year-old woman with morbid obesity
[Ref.: #24290]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #24290]	Country	France
[Ref.: #24290]	Country ISO 3 Code	FRA
[Ref.: #24290]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Specimen
#Host	#Human	#Female
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN881615 (>99% sequence identity) for Paenibacillus ihumii from Microbeatlas

Aquatic Samples	81
Soil Samples	266
Animal Samples	209
Plant Samples	96
Total Samples	652

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24290]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24290]	Paenibacillus sp. AT5 partial 16S rRNA gene, strain AT5	LN881615	1518	ENA	687436 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus ihumii AT5	GCA_001403875	scaffold	GenBank	687436 tax ID	*
[Ref.: #66792]	Paenibacillus ihumii AT5	2775507040	draft	JGI IMG/M	687436 tax ID	*

[Ref.: #24290]

GC-content

50 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus ihumii AT5 NCBI: GCA_001403875.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus ihumii AT5 NCBI: GCA_001403875.1
[Ref.: #69480]	flagellated	yes	72.73	no
[Ref.: #69480]	gram-positive	yes	83.575	no
[Ref.: #69480]	anaerobic	no	98.073	no
[Ref.: #69480]	aerobic	yes	64.602	no
[Ref.: #69480]	halophile	no	86.837	no
[Ref.: #69480]	spore-forming	yes	94.275	no
[Ref.: #69480]	glucose-util	yes	88.413	no
[Ref.: #69480]	thermophile	no	97.6	yes
[Ref.: #69480]	motile	yes	87.485	no
[Ref.: #69480]	glucose-ferment	no	79.671	no

Availability in culture collections External links

[Ref.: #24290]

Culture collection no.

DSM 100664, CSUR 1981, CSUR P1981

[Ref.: #90827]

SI-ID 396945

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Noncontiguous finished genome sequence and description of Paenibacillus ihumii sp. nov. strain AT5.	Togo AH, Khelaifia S, Lagier JC, Caputo A, Robert C, Fournier PE, Maraninchi M, Valero R, Raoult D, Million M	New Microbes New Infect	10.1016/j.nmni.2016.01.013	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24290

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100664

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90827

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396945.1 )

* These data were automatically processed and therefore are not curated

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