Name: Paenibacillus antibioticophila GD11
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132493

Type strain:

Species: Paenibacillus antibioticophila

Strain Designation: GD11

Culture col. no.: DSM 28228, CSUR P1358

Strain history: <- G. Dubourg, Timone Hospital, Marseille, France; GD11

NCBI tax ID(s): 1274374 (species)

Section

Paenibacillus antibioticophila GD11 is a spore-forming, mesophilic, motile bacterium that was isolated from human feces, 63-year-old woman with multidrug-resistant tuberculosis.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	"Paenibacillus antibioticophila"
	Full Scientific Name (LPSN)	Paenibacillus antibioticophila Dubourg et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %97.459

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24282]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #24282]

Culture medium growth

[Ref.: #24282]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24282]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24282]			growth	37 °C

[Ref.: #24282]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24282]	Sample type/isolated from	human feces, 63-year-old woman with multidrug-resistant tuberculosis
[Ref.: #24282]	Geographic location (country and/or sea, region)	Marseille
[Ref.: #24282]	Country	France
[Ref.: #24282]	Country ISO 3 Code	FRA
[Ref.: #24282]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Disease	#Tuberculosis
#Host	#Human	#Female
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24282]	Paenibacillus antibioticophila strain GD11 16S ribosomal RNA gene, partial sequence	KC158472	1509	ENA	1274374 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus antibioticophila GD11	GCA_000455265	scaffold	GenBank	1274374 tax ID	*
[Ref.: #66792]	Paenibacillus antibioticophila GD11	2602041565	draft	JGI IMG/M	1274374 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus antibioticophila GD11 NCBI: GCA_000455265.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus antibioticophila GD11 NCBI: GCA_000455265.1
[Ref.: #69480]	motile	yes	89.283	no
[Ref.: #69480]	flagellated	yes	78.482	no
[Ref.: #69480]	gram-positive	yes	85.34	no
[Ref.: #69480]	anaerobic	no	96.785	no
[Ref.: #69480]	aerobic	yes	73.262	no
[Ref.: #69480]	halophile	no	89.59	no
[Ref.: #69480]	spore-forming	yes	94.396	no
[Ref.: #69480]	thermophile	no	98.584	no
[Ref.: #69480]	glucose-util	yes	88.628	no
[Ref.: #69480]	glucose-ferment	no	79.815	no

Availability in culture collections External links

[Ref.: #24282]

Culture collection no.

DSM 28228, CSUR P1358

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24282

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28228

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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