Cite this strain

"Paenibacillus antibioticophila" (DSM 28228, CSUR P1358, GD11)

BacDive ID 132493

Type strain

Strain Designation GD11

Culture col. no. DSM 28228 CSUR P1358 GD11

NCBI tax ID(s) 1274374

Special Collections DSMZ Cadoret human gut

Links

"Paenibacillus antibioticophila" GD11 is a mesophilic prokaryote that was isolated from human feces, 63-year-old woman with multidrug-resistant tuberculosis.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 406222

DSM 28228

@ref 20215

Last LPSN update 2025-12-16 10:01:31

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Paenibacillus

Species "Paenibacillus antibioticophila"

Full scientific name Paenibacillus antibioticophila Dubourg et al. 2015

Morphology

Cell morphology

@ref	Motility	Confidence
125439		90.3

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24282	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24282	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125438		91.084
125439		97.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Disease	#Tuberculosis
#Host	#Human	#Female
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24282	human feces, 63-year-old woman with multidrug-resistant tuberculosis	Marseille	France	FRA	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	Pa_GD11 assembly for Paenibacillus antibioticophila GD11	scaffold	GCA_000455265	2602041565	1274374	60.45

Genome browser: GCA_000455265

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24282	Paenibacillus antibioticophila strain GD11 16S ribosomal RNA gene, partial sequence	KC158472	1509		1274374

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paenibacillus antibioticophila GD11
NCBI: GCA_000455265

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	97.20	no
125439	motility	BacteriaNetⓘ	yes	90.30	no
125439	gram_stain	BacteriaNetⓘ	variable	85.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	82.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paenibacillus antibioticophila GD11
NCBI: GCA_000455265.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	67.34	no
125438	anaerobic	anaerobicⓘ	no	89.53	no
125438	aerobic	aerobicⓘ	no	60.32	no
125438	spore-forming	spore-formingⓘ	yes	91.08	no
125438	thermophilic	thermophileⓘ	no	91.77	yes
125438	flagellated	motile2+ⓘ	yes	84.67	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Noncontiguous finished genome sequence and description of Paenibacillus antibioticophila sp. nov. GD11(T), the type strain of Paenibacillus antibioticophila.	Dubourg G, Cimmino T, Senkar SA, Lagier JC, Robert C, Flaudrops C, Brouqui P, Raoult D, Fournier PE, Rolain JM.	New Microbes New Infect	10.1016/j.nmni.2015.10.006	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24282	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28228
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Paenibacillus antibioticophila" (DSM 28228, CSUR P1358, GD11)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_000455265

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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