Name: Bacillus ndiopicus FF3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132491

Type strain:

Species: Bacillus ndiopicus

Strain Designation: FF3

Culture col. no.: DSM 27837, CSUR P3025

Strain history: <- C. I. Lo, Unité des Rickettsies, Univ. Méditerranée, Marseille, France; FF3

NCBI tax ID(s): 1347368 (species)

SI-ID 403226

DSM 27837

Section

Bacillus ndiopicus FF3 is a spore-forming, mesophilic, motile bacterium that was isolated from human skin, healthy 39-year-old Senegalese man.

motile
spore-forming
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus ndiopicus**
	Full Scientific Name (LPSN)	Bacillus ndiopicus Lo et al. 2017

Synonym

"Metasolibacillus ndiopicus"

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %97.151

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24280]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #24280]

Culture medium growth

[Ref.: #24280]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24280]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24280]			growth	30 °C

[Ref.: #24280]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24280]	Sample type/isolated from	human skin, healthy 39-year-old Senegalese man
[Ref.: #24280]	Geographic location (country and/or sea, region)	Ndiop
[Ref.: #24280]	Country	Senegal
[Ref.: #24280]	Country ISO 3 Code	SEN
[Ref.: #24280]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host	#Human	#Male
#Host Body-Site	#Organ	#Skin, Nail, Hair

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24280]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24280]	Bacillus sp. FF3 partial 16S rRNA gene, strain FF3	HG315675	1520	ENA	1347368 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus ndiopicus FF3	GCA_000612805	scaffold	GenBank	1347368 tax ID	*
[Ref.: #66792]	Bacillus ndiopicus FF3	2619619270	draft	JGI IMG/M	1347368 tax ID	*

[Ref.: #24280]

GC-content

37.03 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus ndiopicus FF3 NCBI: GCA_000612805.1
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bacillus ndiopicus FF3 NCBI: GCA_000612805.1
[Ref.: #69480]	motile	yes	90.024	no
[Ref.: #69480]	flagellated	yes	83.077	no
[Ref.: #69480]	gram-positive	yes	90.958	no
[Ref.: #69480]	anaerobic	no	98.757	no
[Ref.: #69480]	halophile	no	72.699	no
[Ref.: #69480]	spore-forming	yes	93.988	no
[Ref.: #69480]	thermophile	no	99.016	no
[Ref.: #69480]	glucose-util	yes	83.911	no
[Ref.: #69480]	aerobic	yes	93.292	no
[Ref.: #69480]	glucose-ferment	no	82.206	no

Availability in culture collections External links

[Ref.: #24280]

Culture collection no.

DSM 27837, CSUR P3025

[Ref.: #90821]

SI-ID 403226

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24280

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27837

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90821

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403226.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Bacillus ndiopicus in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF