Lysobacter tolerans (DSM 28473, KCTC 42936, MCC 2572)

Cell morphology

Colony morphology

Multimedia

• @ref:	24274
  multimedia content:	DSM_28473.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_28473.jpg
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

Culture temp

Culture pH

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43676	15824 ChEBI	D-fructose	+	assimilation
43676	15824 ChEBI	D-fructose	+	carbon source
43676	12936 ChEBI	D-galactose	-	carbon source
43676	17634 ChEBI	D-glucose	+	assimilation
43676	17634 ChEBI	D-glucose	+	carbon source
43676	4853 ChEBI	esculin	-	hydrolysis
43676	5291 ChEBI	gelatin	-	hydrolysis
43676	17632 ChEBI	nitrate	-	reduction
43676	16199 ChEBI	urea	-	hydrolysis

Antibiotic resistance

Enzymes

@ref	Value	Activity	Ec
43676	beta-galactosidase	-	3.2.1.23
43676	catalase	+	1.11.1.6
43676	cytochrome oxidase	+	1.9.3.1

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	biotin biosynthesis	100	4 of 4
66794	ppGpp biosynthesis	100	4 of 4
66794	cyanate degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	sulfopterin metabolism	100	4 of 4
66794	denitrification	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	suberin monomers biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	95.45	21 of 22
66794	Entner Doudoroff pathway	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	glycogen metabolism	80	4 of 5
66794	methylglyoxal degradation	80	4 of 5
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	heme metabolism	78.57	11 of 14
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	NAD metabolism	77.78	14 of 18
66794	phenylalanine metabolism	76.92	10 of 13
66794	vitamin B1 metabolism	76.92	10 of 13
66794	purine metabolism	76.6	72 of 94
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	gluconeogenesis	75	6 of 8
66794	pentose phosphate pathway	72.73	8 of 11
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	tryptophan metabolism	71.05	27 of 38
66794	lipid metabolism	70.97	22 of 31
66794	threonine metabolism	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	alanine metabolism	68.97	20 of 29
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	octane oxidation	66.67	2 of 3
66794	pyrimidine metabolism	66.67	30 of 45
66794	IAA biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	vitamin B6 metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	C4 and CAM-carbon fixation	62.5	5 of 8
66794	starch degradation	60	6 of 10
66794	D-cycloserine biosynthesis	60	3 of 5
66794	lipoate biosynthesis	60	3 of 5
66794	propanol degradation	57.14	4 of 7
66794	glutathione metabolism	57.14	8 of 14
66794	lysine metabolism	57.14	24 of 42
66794	cysteine metabolism	55.56	10 of 18
66794	d-mannose degradation	55.56	5 of 9
66794	non-pathway related	55.26	21 of 38
66794	arginine metabolism	54.17	13 of 24
66794	isoprenoid biosynthesis	53.85	14 of 26
66794	quinate degradation	50	1 of 2
66794	isoleucine metabolism	50	4 of 8
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	butanoate fermentation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	coenzyme A metabolism	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	glycogen biosynthesis	50	2 of 4
66794	ribulose monophosphate pathway	50	1 of 2
66794	sulfate reduction	46.15	6 of 13
66794	proline metabolism	45.45	5 of 11
66794	valine metabolism	44.44	4 of 9
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	vitamin K metabolism	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	arachidonic acid metabolism	38.89	7 of 18
66794	urea cycle	38.46	5 of 13
66794	degradation of sugar alcohols	37.5	6 of 16
66794	ketogluconate metabolism	37.5	3 of 8
66794	oxidative phosphorylation	36.26	33 of 91
66794	polyamine pathway	34.78	8 of 23
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	enterobactin biosynthesis	33.33	1 of 3
66794	pantothenate biosynthesis	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	coenzyme M biosynthesis	30	3 of 10
66794	degradation of hexoses	27.78	5 of 18
66794	metabolism of disaccharids	27.27	3 of 11
66794	ascorbate metabolism	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	cholesterol biosynthesis	27.27	3 of 11
66794	3-phenylpropionate degradation	26.67	4 of 15
66794	lactate fermentation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	carnitine metabolism	25	2 of 8
66794	nitrate assimilation	22.22	2 of 9

Fatty acid profile?

Metadata FA analysis
type of FA analysis	whole cell analysis
incubation medium	Tryptic Soy Agar
agar/liquid	agar
incubation temperature	28
incubation time	2
incubation_oxygen	aerobic
library/peak naming table	RTSBA6.0B
system	MIS MIDI
@ref	43676
Fatty acid Percentage C15:0 iso 36 C17:0 iso 3OH 15 C15:1 iso G 14.9 C16:1ω7c / C16:1ω6c 12.1 C16:0-10-methyl / iso-C17:1ω9c 9.2 C15:0 iso 3OH 4.4 C17:1 iso I / C17:1 anteiso B 1.6 C16:0 1.6 C14:0 1 C15:0 anteiso 1

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence KM888877 (>99% sequence identity) for Lysobacter tolerans subclade from Microbeatlas

Aquatic Samples	686
Soil Samples	139
Animal Samples	601
Plant Samples	47
Total Samples	1473

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2681812867 annotated assembly for Solilutibacter tolerans UM1	contig	GCA_900155935	2681812867	1604334	75.21

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24274	Lysobacter tolerans strain UM1 16S ribosomal RNA gene, partial sequence	KM888877	1419		1604334
124043	Luteimonas tolerans strain DSM 28473 16S-23S ribosomal RNA intergenic spacer, partial sequence.	MG760580	470		1604334

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Proposal of Lysobacter pythonis sp. nov. isolated from royal pythons (Python regius).	Busse HJ, Huptas C, Baumgardt S, Loncaric I, Spergser J, Scherer S, Wenning M, Kampfer P	Syst Appl Microbiol	10.1016/j.syapm.2019.02.002	2019
Phylogeny	Luteimonas tolerans sp. nov., isolated from hexachlorocyclohexane-contaminated soil.	Rani P, Mukherjee U, Verma H, Kamra K, Lal R	Int J Syst Evol Microbiol	10.1099/ijsem.0.000956	2016