Nocardia camponoti (DSM 100526, CGMCC 4.7278, 1H-HV4)

Name: Nocardia camponoti (DSM 100526, CGMCC 4.7278, 1H-HV4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132481

Type strain

Strain Designation 1H-HV4

Culture col. no. DSM 100526 CGMCC 4.7278 1H-HV4

NCBI tax ID(s) 1616106

Special Collections DSMZ Literature strains

History <- C. Liu, Northeast Agricultural Univ., Harbin, China; 1H-HV4

Links

Nocardia camponoti 1H-HV4 is an aerobe, Gram-positive, pleomorphic-shaped bacterium that was isolated from head of an ant Mayr.

Gram-positive pleomorphic-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398809

DSM 100526

@ref 20215

Last LPSN update 2026-02-09 11:31:43

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Nocardia

Species Nocardia camponoti

Full scientific name Nocardia camponoti Liu et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
43684	positive	pleomorphic-shaped
125438	positive		91.077
125439	positive		95.2

Colony morphology

43684

Colony colorWhite

Multimedia

@ref:	24270
multimedia content:	DSM_100526.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100526.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24270	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24270	positive	growth	28
43684	positive	growth	15-30
43684	positive	optimum	28

Culture pH

@ref	Ability	Type	PH	PH range
43684	positive	optimum	6-8
43684	positive	growth	5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43684	aerobe
125439	obligate aerobe	94.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43684	NaCl	positive	growth	0-2 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43684	16919 ChEBI	creatine	+	nitrogen source
43684	15824 ChEBI	D-fructose	+	carbon source
43684	12936 ChEBI	D-galactose	+	carbon source
43684	17634 ChEBI	D-glucose	+	carbon source
43684	16899 ChEBI	D-mannitol	+	carbon source
43684	16024 ChEBI	D-mannose	+	carbon source
43684	16988 ChEBI	D-ribose	-	carbon source
43684	17924 ChEBI	D-sorbitol	+	carbon source
43684	65327 ChEBI	D-xylose	+	carbon source
43684	4853 ChEBI	esculin	+	hydrolysis
43684	5291 ChEBI	gelatin	-	hydrolysis
43684	15428 ChEBI	glycine	-	nitrogen source
43684	16977 ChEBI	L-alanine	+	nitrogen source
43684	30849 ChEBI	L-arabinose	+	carbon source
43684	16467 ChEBI	L-arginine	+	nitrogen source
43684	17196 ChEBI	L-asparagine	+	nitrogen source
43684	29991 ChEBI	L-aspartate	+	nitrogen source
43684	29985 ChEBI	L-glutamate	+	nitrogen source
43684	18050 ChEBI	L-glutamine	+	nitrogen source
43684	62345 ChEBI	L-rhamnose	+	carbon source
43684	17115 ChEBI	L-serine	+	nitrogen source
43684	16857 ChEBI	L-threonine	-	nitrogen source
43684	17895 ChEBI	L-tyrosine	-	nitrogen source
43684	17716 ChEBI	lactose	-	carbon source
43684	17306 ChEBI	maltose	+	carbon source
43684	17268 ChEBI	myo-inositol	+	carbon source
43684	17632 ChEBI	nitrate	-	reduction
43684	16634 ChEBI	raffinose	+	carbon source
43684	28017 ChEBI	starch	-	hydrolysis
43684	17992 ChEBI	sucrose	+	carbon source
43684	53424 ChEBI	tween 20	+	hydrolysis
43684	53423 ChEBI	tween 40	+	hydrolysis
43684	53426 ChEBI	tween 80	+	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43684	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
43684	cellulase	-	3.2.1.4
43684	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body-Site	#Other	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
24270	head of an ant (Camponotus japonicas) Mayr	Camponotus japonicas	Heilongjiang province, Harbin, Northeast Agriculture University	China	CHN	Asia
43684	The head of Camponotus japonicus Mayr collected from North-east Agriculture University		Harbin, Heilongjiang	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence KP784782 (>99% sequence identity) for Nocardia camponoti subclade from Microbeatlas

Aquatic Samples	260
Soil Samples	245
Animal Samples	23
Plant Samples	11
Total Samples	539

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24270	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1464613v1 assembly for Nocardia camponoti CGMCC 4.7278	scaffold	GCA_014646135	1616106.3	2989630785	1616106	73.98

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24270	Nocardia camponoti strain 1H-HV4 16S ribosomal RNA gene, partial sequence	KP784782	1511		1616106

GC content

@ref	GC-content (mol%)	Method
24270	68.7	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardia camponoti CGMCC 4.7278
NCBI: GCA_014646135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	54.20	no
125439	motility	BacteriaNetⓘ	no	89.20	no
125439	gram_stain	BacteriaNetⓘ	positive	95.20	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardia camponoti CGMCC 4.7278
NCBI: GCA_014646135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.08	yes
125438	anaerobic	anaerobicⓘ	no	96.93	yes
125438	aerobic	aerobicⓘ	yes	89.10	no
125438	spore-forming	spore-formingⓘ	yes	60.18	no
125438	thermophilic	thermophileⓘ	no	94.90	yes
125438	flagellated	motile2+ⓘ	no	88.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia lasii sp. nov., a novel actinomycete isolated from the cuticle of an ant (Lasius fuliginosus L).	Liu C, Bai L, Ye L, Zhao J, Yan K, Xiang W, Wang X	Antonie Van Leeuwenhoek	10.1007/s10482-016-0753-y	2016
Phylogeny	Nocardia camponoti sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicas Mayr).	Liu C, Guan X, Li Y, Li W, Ye L, Kong X, Song J, Wang X, Xiang W	Int J Syst Evol Microbiol	10.1099/ijsem.0.000963	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24270	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100526
#43684	Chongxi Liu, Xuejiao Guan, Yao Li, Wenchao Li, Lan Ye, Xiangxing Kong, Jia Song, Xiangjing Wang, Wensheng Xiang: Nocardia camponoti sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicas Mayr). IJSEM 66: 1900 - 1905 2016 ( DOI 10.1099/ijsem.0.000963 , PubMed 26868112 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardia camponoti (DSM 100526, CGMCC 4.7278, 1H-HV4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014646135

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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