Name: Vallitalea guaymasensis L81
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132478

Type strain:

Species: Vallitalea guaymasensis

Strain Designation: L81

Culture col. no.: DSM 29592, JCM 30920

Strain history: I. H. Steen; Centre for Geobiol., Univ. of Bergen, Norway; L81.

NCBI tax ID(s): 1675854 (species)

Other strains from Vallitalea guaymasensis

V. guaymasensis Ra 1766F, Ra1766G1, DSM 24848, ... (type strain)

Section

Vallitalea guaymasensis L81 is an obligate anaerobe, chemoorganoheterotroph, Gram-positive bacterium that was isolated from chimney of a deep-sea black smoker, approximately 2400 m depth.

Gram-positive
motile
rod-shaped
chemoorganoheterotroph
obligate anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Vallitaleaceae*
	Genus	*Vallitalea*
	Species	**Vallitalea guaymasensis**
	Full Scientific Name (LPSN)	Vallitalea guaymasensis Lakhal et al. 2013

Synonym

Abyssivirga alkaniphila

Information on morphological and physiological properties Morphology

[Ref.: #43989]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43989]	Cell length	2.0-5.0 µm

[Ref.: #43989]	Cell width	0.5 µm

[Ref.: #43989]	Cell shape	rod-shaped

[Ref.: #43989]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %94.828

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24267]

Culture medium

MARINE DESULFOVIBRIO COMPLEX MEDIUM (DSMZ Medium 1040)

[Ref.: #24267]

Culture medium growth

[Ref.: #24267]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24267]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24267]	growth	37 °C
[Ref.: #43989]	growth	15-42 °C
[Ref.: #43989]	optimum	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #24267]	Temperature range	mesophilic
[Ref.: #43989]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43989]			optimum	7.0-8.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43989]	Oxygen tolerance	obligate anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %97.922

[Ref.: #43989]

Nutrition type

chemoorganoheterotroph

[Ref.: #43989]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %97
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43989]		NaCl		growth	0.5-6	%(w/v)
[Ref.: #43989]		NaCl		optimum	3	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43989]	acetate ChEBI	-	growth
[Ref.: #43989]	D-galacturonic acid ChEBI	+	growth
[Ref.: #43989]	fructose ChEBI	+	growth
[Ref.: #43989]	galactose ChEBI	+	growth
[Ref.: #43989]	glucose ChEBI	+	growth
[Ref.: #43989]	glycerol ChEBI	+	growth
[Ref.: #43989]	lactate ChEBI	+	growth
[Ref.: #43989]	maltose ChEBI	+	growth
[Ref.: #43989]	pectin ChEBI	+	growth
[Ref.: #43989]	peptone	+	growth
[Ref.: #43989]	polygalacturonic acid ChEBI	+	growth
[Ref.: #43989]	ribose ChEBI	+	growth
[Ref.: #43989]	thiosulfate ChEBI	+	electron acceptor
[Ref.: #43989]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24267]	Sample type/isolated from	chimney of a deep-sea black smoker, approximately 2400 m depth
[Ref.: #24267]	Geographic location (country and/or sea, region)	Arctic Mid-Ocean Ridge, Loki’s Castle vent field
[Ref.: #24267]	Geographic location	73.5500°/8.1500°

[Ref.: #43989]	Sample type/isolated from	methane-producing, hydro- carbon-degrading microbial consortium enriched from a black smoker at the Loki's Castle vent field, Arctic Mid-Ocean Ridge
[Ref.: #43989]	Geographic location (country and/or sea, region)	Loki's Castle vent field
[Ref.: #43989]	Country	Arctic Ocean
[Ref.: #43989]	Geographic location	73.5500°/8.1500°
[Ref.: #43989]	Enrichment culture	Met II growth medium
[Ref.: #43989]	Enrichment culture composition	22 g/L NaCl, 0.14 g/L CaCl2.2H2O, 0.34 g/L KCl, 0.5 g NH4Cl, 5.5 g/L MgCl2.6H2O, 0.14 g/L K2HPO4.3H2O, 0.2 g/L yeast extract, 10 ml trace element solution (DSMZ medium 141) and 0.5 ml resazurin solution (0.02 %), 10 ml iron solution [0.2 g (NH4)2Fe(SO4)2.6H2O dissolved in 0.2 ml 1 M HCl and added to 100 ml distilled water], 0.5 g cysteine hydrochloride, 10 ml vitamin solution, 30 ml 1.0 M NaHCO3, 5 ml 0.5 M Na2S, pH 7.2

[Ref.: #67770]	Sample type/isolated from	Biofilm sampled from a black smoker chimney at the Loki
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Hydrothermal vent
#Environmental	#Biofilm	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP233895 (>99% sequence identity) for Eubacteriales from Microbeatlas

Aquatic Samples	115
Soil Samples	16
Animal Samples	85
Plant Samples
Total Samples	216

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24267]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24267]	Abyssivirga alkaniphila strain L81 16S ribosomal RNA gene, partial sequence	KP233895	1520	ENA	1675854 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Vallitalea guaymasensis strain L81	1185412.3	wgs	PATRIC	1185412 tax ID	*
[Ref.: #66792]	Vallitalea guaymasensis L81	GCA_003313305	contig	GenBank	1185412 tax ID	*

[Ref.: #24267]

GC-content

31.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Vallitalea guaymasensis strain L81 PATRIC: 1185412.3
[Ref.: #69481]	spore-forming	no	97	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Vallitalea guaymasensis strain L81 PATRIC: 1185412.3
[Ref.: #69480]	motile	yes	85.806	yes
[Ref.: #69480]	gram-positive	yes	76.406	yes
[Ref.: #69480]	anaerobic	yes	98.315	yes
[Ref.: #69480]	aerobic	no	97.081	no
[Ref.: #69480]	halophile	no	83.518	no
[Ref.: #69480]	spore-forming	yes	64.07	yes
[Ref.: #69480]	flagellated	yes	50.838	no
[Ref.: #69480]	thermophile	no	94.552	no
[Ref.: #69480]	glucose-util	yes	90.98	yes
[Ref.: #69480]	glucose-ferment	yes	55.908	no

Availability in culture collections External links

[Ref.: #24267]

Culture collection no.

DSM 29592, JCM 30920

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Abyssivirga alkaniphila gen. nov., sp. nov., an alkane-degrading, anaerobic bacterium from a deep-sea hydrothermal vent system, and emended descriptions of Natranaerovirga pectinivora and Natranaerovirga hydrolytica.	Schouw A, Leiknes Eide T, Stokke R, Pedersen RB, Steen IH, Bodtker G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000934	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24267

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29592

#43989

Anders Schouw, Tove Leiknes Eide, Runar Stokke, Rolf Birger Pedersen, Ida Helene Steen, Gunhild Bødtker: Abyssivirga alkaniphila gen. nov., sp. nov., an alkane-degrading, anaerobic bacterium from a deep-sea hydrothermal vent system, and emended descriptions of Natranaerovirga pectinivora and Natranaerovirga hydrolytica. IJSEM 66: 1724 - 1734 2016 ( DOI 10.1099/ijsem.0.000934 , PubMed 26822139 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Abyssivirga alkaniphila in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Vallitalea guaymasensis strain L81

Vallitalea guaymasensis strain L81

Change proposal

Change proposal