Hamadaea flava (DSM 100517, CGMCC 4.7289, CPCC 204160)

Cell morphology

Colony morphology

Multimedia

• @ref:	24266
  multimedia content:	DSM_100517.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100517.jpg
  caption:	Medium 987 28°
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
24266	ISP2 MEDIUM (DSMZ Medium 987)		Medium recipe at MediaDive	Name: ISP2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
43674	M5 medium			cellulose 2.5 g, sodium pyruvate 2.0 g, L-proline 1g, KNO3 0.25 g, MgSO4 0.2 g, K2HPO4 0.2 g, CaCl2 0.5 g and H2O 1000 ml; pH 7.2, supplemented with nalidixic acid (25 mg/L) and nystatin (50 mg/L)
24266	N-Z-AMINE-MEDIUM (DSMZ Medium 554)		Medium recipe at MediaDive	Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

Culture temp

Culture pH

Oxygen tolerance

Halophily

Observation

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43674	17108 ChEBI	D-arabinose	+	carbon source
43674	15824 ChEBI	D-fructose	+	carbon source
43674	12936 ChEBI	D-galactose	+	carbon source
43674	17634 ChEBI	D-glucose	+	carbon source
43674	16024 ChEBI	D-mannose	+	carbon source
43674	5291 ChEBI	gelatin	+	hydrolysis
43674	17196 ChEBI	L-asparagine	+	nitrogen source
43674	29991 ChEBI	L-aspartate	+	nitrogen source
43674	17561 ChEBI	L-cysteine	+	nitrogen source
43674	16283 ChEBI	L-cystine	+	nitrogen source
43674	29985 ChEBI	L-glutamate	+	nitrogen source
43674	15971 ChEBI	L-histidine	-	nitrogen source
43674	17191 ChEBI	L-isoleucine	+	nitrogen source
43674	18019 ChEBI	L-lysine	+	nitrogen source
43674	16643 ChEBI	L-methionine	+	nitrogen source
43674	17203 ChEBI	L-proline	+	nitrogen source
43674	17115 ChEBI	L-serine	+	nitrogen source
43674	16857 ChEBI	L-threonine	+	nitrogen source
43674	17895 ChEBI	L-tyrosine	+	nitrogen source
43674	16414 ChEBI	L-valine	+	nitrogen source
43674	17306 ChEBI	maltose	+	carbon source
43674	17632 ChEBI	nitrate	-	reduction
43674	16634 ChEBI	raffinose	+	carbon source
43674	33942 ChEBI	ribose	+	carbon source
43674	28017 ChEBI	starch	+	hydrolysis
43674	53424 ChEBI	tween 20	+	hydrolysis
43674	53423 ChEBI	tween 40	+	hydrolysis
43674	53425 ChEBI	tween 60	+	hydrolysis
43674	53426 ChEBI	tween 80	+	hydrolysis

Enzymes

@ref	Value	Activity	Ec
43674	catalase	+	1.11.1.6
43674	cytochrome oxidase	+	1.9.3.1
43674	urease	-	3.5.1.5

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence KT946774 (>99% sequence identity) for Hamadaea flava subclade from Microbeatlas

Aquatic Samples	67
Soil Samples	825
Animal Samples	33
Plant Samples	144
Total Samples	1069

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2417208v1 assembly for Hamadaea flava DSM 100517	contig	GCA_024172085	1742688.3	2852728668	1742688	70.51
124043	ASM4265030v1 assembly for Hamadaea flava CGMCC 4.7289	scaffold	GCA_042650305			1742688	58.08

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24266	Hamadaea flava strain YIM C0533 16S ribosomal RNA gene, partial sequence	KT946774	1520		1742688

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hamadaea flava sp. nov., isolated from a soil sample and emended description of the genus Hamadaea.	Chu X, Li S, Chen W, Devi Asem M, Duan YQ, Nie GX, Hozzein WN, Zhi XY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000949	2016