Name: Hamadaea flava DSM 100517
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132477

Type strain:

Species: Hamadaea flava

Culture col. no.: DSM 100517, CGMCC 4.7289, CPCC 204160, KCTC 39591, YIM C0533, JCM 32491

Strain history: CGMCC 4.7289 <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM C0533.

NCBI tax ID(s): 1742688 (species)

SI-ID 400621

DSM 100517

Section

Hamadaea flava DSM 100517 is an aerobe, Gram-positive bacterium that was isolated from soil.

Gram-positive
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Micromonosporales*
	Family	*Micromonosporaceae*
	Genus	*Hamadaea*
	Species	**Hamadaea flava**
	Full Scientific Name (LPSN)	Hamadaea flava Chu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43674]	Gram stain	positive

[Ref.: #43674]	Motility	no

[Ref.: #43674]	Incubation period	5 days
[Ref.: #43674]	Cultivation medium used	M5 medium

Multimedia content

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Caption:

Medium 987 28°

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP2 MEDIUM (DSMZ Medium 987)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium

M5 medium

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Culture medium growth

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Culture medium composition

expand / minimize

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Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

		Temperature
[Ref.: #24266]	growth	28 °C
[Ref.: #43674]	growth	15-37 °C
[Ref.: #43674]	optimum	28-30 °C
[Ref.: #67770]	growth	28 °C

[Ref.: #24266]	Temperature range	mesophilic
[Ref.: #43674]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43674]			optimum	7-8
[Ref.: #43674]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43674]		NaCl		growth	0-3	%(w/v)
[Ref.: #43674]		NaCl		optimum	0-1	%(w/v)

[Ref.: #43674]	Observation	Abundant globose bodies present
[Ref.: #67770]	Observation	quinones: MK-9(H₆)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43674]	D-arabinose ChEBI	+	carbon source
[Ref.: #43674]	D-fructose ChEBI	+	carbon source
[Ref.: #43674]	D-galactose ChEBI	+	carbon source
[Ref.: #43674]	D-glucose ChEBI	+	carbon source
[Ref.: #43674]	D-mannose ChEBI	+	carbon source
[Ref.: #43674]	gelatin ChEBI	+	hydrolysis
[Ref.: #43674]	L-asparagine ChEBI	+	nitrogen source
[Ref.: #43674]	L-aspartate ChEBI	+	nitrogen source
[Ref.: #43674]	L-cysteine ChEBI	+	nitrogen source
[Ref.: #43674]	L-cystine ChEBI	+	nitrogen source
[Ref.: #43674]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #43674]	L-histidine ChEBI	-	nitrogen source
[Ref.: #43674]	L-isoleucine ChEBI	+	nitrogen source
[Ref.: #43674]	L-lysine ChEBI	+	nitrogen source
[Ref.: #43674]	L-methionine ChEBI	+	nitrogen source
[Ref.: #43674]	L-proline ChEBI	+	nitrogen source
[Ref.: #43674]	L-serine ChEBI	+	nitrogen source
[Ref.: #43674]	L-threonine ChEBI	+	nitrogen source
[Ref.: #43674]	L-tyrosine ChEBI	+	nitrogen source
[Ref.: #43674]	L-valine ChEBI	+	nitrogen source
[Ref.: #43674]	maltose ChEBI	+	carbon source
[Ref.: #43674]	nitrate ChEBI	-	reduction
[Ref.: #43674]	raffinose ChEBI	+	carbon source
[Ref.: #43674]	ribose ChEBI	+	carbon source
[Ref.: #43674]	starch ChEBI	+	hydrolysis
[Ref.: #43674]	tween 20 ChEBI	+	hydrolysis
[Ref.: #43674]	tween 40 ChEBI	+	hydrolysis
[Ref.: #43674]	tween 60 ChEBI	+	hydrolysis
[Ref.: #43674]	tween 80 ChEBI	+	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #43674]	catalase	+	1.11.1.6
[Ref.: #43674]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43674]	urease	-	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24266]	Sample type/isolated from	soil
[Ref.: #24266]	Geographic location (country and/or sea, region)	Yunnan province, Shiling county, Impressive Toboco farm
[Ref.: #24266]	Country	China
[Ref.: #24266]	Country ISO 3 Code	CHN
[Ref.: #24266]	Continent	Asia

[Ref.: #43674]	Sample type/isolated from	A soil sample
[Ref.: #43674]	Geographic location (country and/or sea, region)	Shiling county, Yunnan Province
[Ref.: #43674]	Country	China
[Ref.: #43674]	Country ISO 3 Code	CHN
[Ref.: #43674]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from Shiling County
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

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Global distribution of 16S sequence KT946774 (>99% sequence identity) for Hamadaea flava subclade from Microbeatlas

Aquatic Samples	67
Soil Samples	825
Animal Samples	33
Plant Samples	144
Total Samples	1069

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

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Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24266]	Hamadaea flava strain YIM C0533 16S ribosomal RNA gene, partial sequence	KT946774	1520	ENA	1742688 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Hamadaea flava DSM 100517	2852728668	draft	JGI IMG/M	1742688 tax ID	*
[Ref.: #66792]	Hamadaea flava DSM 100517	GCA_024172085	contig	GenBank	1742688 tax ID	*

[Ref.: #43674]	GC-content	69.4 mol%	Thermal denaturation, fluorometry
[Ref.: #24266]	GC-content	69.4 mol%
[Ref.: #67770]	GC-content	69.4 mol%	thermal denaturation, midpoint method (Tm)

Availability in culture collections External links

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Culture collection no.

DSM 100517, CGMCC 4.7289, CPCC 204160, KCTC 39591, YIM C0533, JCM 32491

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SI-ID 400621

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hamadaea flava sp. nov., isolated from a soil sample and emended description of the genus Hamadaea.	Chu X, Li S, Chen W, Devi Asem M, Duan YQ, Nie GX, Hozzein WN, Zhi XY, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000949	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24266

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100517

#43674

Xiao Chu, Shuai Li, Wei Chen, Mipeshwaree Devi Asem, Yan-Qing Duan, Guo-Xing Nie, Wael N. Hozzein, Xiao-Yang Zhi, Wen-Jun Li: Hamadaea flava sp. nov., isolated from a soil sample and emended description of the genus Hamadaea. IJSEM 66: 1818 - 1822 2016 ( DOI 10.1099/ijsem.0.000949 , PubMed 26842996 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#90810

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400621.1 )

* These data were automatically processed and therefore are not curated

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