Cite this strain

"Streptomyces humi" (DSM 42174, MCCC 1K00505, MUSC 119)

BacDive ID 132476

Type strain

Culture col. no. DSM 42174 MCCC 1K00505 MUSC 119

NCBI tax ID(s) 1428620

Special Collections DSMZ Wink compendium

Links

"Streptomyces humi" DSM 42174 is a mesophilic prokaryote that builds an aerial mycelium and was isolated from mangrove sediment.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 402255

DSM 42174

@ref 20215

Last LPSN update 2025-12-16 10:01:31

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species "Streptomyces humi"

Full scientific name Streptomyces humi Zainal et al. 2016

Morphology

Colony morphology

@ref	Colony color	Medium used
69354	Grey beige (1019)	ISP 6
69354	Grey beige (1019)	suter without tyrosine
69354	Clay brown (8003)	ISP 2
69354	Brown beige (1011)	ISP 3
69354	Brown beige (1011)	ISP 4
69354	Nut brown (8011)	ISP 5
69354	Sepia brown (8014)	ISP 7
69354	Umbra grey (7022)	suter with tyrosine

Multicellular morphology

@ref	Complex name	Complex color	Medium name
69354	Aerial mycelium	Stone grey (7030)	ISP 2
69354	Aerial mycelium	Stone grey (7030)	ISP 3
69354	Aerial mycelium	Light ivory (1015)	ISP 4
69354	Aerial mycelium	Stone grey (7030)	ISP 5
69354	Aerial mycelium		ISP 6
69354	Aerial mycelium	Grey beige (1019)	ISP 7
69354	Aerial mycelium		suter with tyrosine
69354	Aerial mycelium		suter without tyrosine

Pigmentation

@ref	Production	Color	Name
69354			Melanin
69354		Ochre brown (8001), copper brown (8004), brown beige (1011), clay brown (8003), olive brown (8008), fawn brown (8007), jet black (9005)	soluble pigment

Multimedia

@ref:	24265
multimedia content:	DSM_42174.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_42174.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

@ref:	69354
multimedia content:	DSM_42174_image3.jpeg
multimedia.multimedia content:	DSM_42174_image3.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

@ref:	69354
multimedia content:	DSM_42174_image4.jpeg
multimedia.multimedia content:	DSM_42174_image4.jpeg
caption:	Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)
intellectual property rights:	Helmholtz-Zentrum für Infektionsforschung GmbH
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24265	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24265	positive	growth	28	mesophilic

Physiology and metabolism

Halophily

@ref	Salt	Growth	Tested relation	Concentration
69354	NaCl	positive	growth	0-5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
69354	22599 ChEBI	arabinose	+	growth
69354	62968 ChEBI	cellulose	-	growth
68379	17634 ChEBI	D-glucose	-	fermentation	from API Coryne
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68379	4853 ChEBI	esculin	+	hydrolysis	from API Coryne
69354	28757 ChEBI	fructose	+	growth
68379	5291 ChEBI	gelatin	+	hydrolysis	from API Coryne
69354	17234 ChEBI	glucose	+	growth
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
69354	17268 ChEBI	inositol	+	growth
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68379	17306 ChEBI	maltose	-	fermentation	from API Coryne
69354	37684 ChEBI	mannose	+	growth
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
69354	16634 ChEBI	raffinose	+	growth
69354	26546 ChEBI	rhamnose	+	growth
68379	17992 ChEBI	sucrose	-	fermentation	from API Coryne
69354	17992 ChEBI	sucrose	+	growth
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
69354	18222 ChEBI	xylose	+	growth

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68379	alkaline phosphatase	+	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	+	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68379	beta-galactosidase	+	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68379	beta-glucosidase	+	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	+		from API Coryne
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
68379	pyrazinamidase	-	3.5.1.B15	from API Coryne
68379	pyrrolidonyl arylamidase	-	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	+		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
69354	-	-	-	+	-	+	-	-	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
69354	not determinedn.d.	+	+/-	+	+/-	+	+	+/-	-	-	+	+	+/-	+	-	+/-	+	-	+	+/-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Tree

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24265	mangrove sediment	Tanjung Lumpur in the State of Pahang (3° 48' 3.2'' N, 103° 20' 11.0''E)	Malaysia	MYS	Asia	3.8009	103.336 3.8009/103.336

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM100508v2 assembly for Streptomyces humi MUSC 119	contig	GCA_001005085	1428620.6	2648501282	1428620	36.97

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24265	Streptomyces humi strain MUSC 119 16S ribosomal RNA gene, partial sequence	KJ632661	1488		1428620
124043	Streptomyces humi strain MUSC 119 16S ribosomal RNA gene, partial sequence.	KF682175	1431		1428620

GC content

@ref	GC-content (mol%)	Method
24265	72.6	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	A computational framework to explore large-scale biosynthetic diversity.	Navarro-Munoz JC, Selem-Mojica N, Mullowney MW, Kautsar SA, Tryon JH, Parkinson EI, De Los Santos ELC, Yeong M, Cruz-Morales P, Abubucker S, Roeters A, Lokhorst W, Fernandez-Guerra A, Cappelini LTD, Goering AW, Thomson RJ, Metcalf WW, Kelleher NL, Barona-Gomez F, Medema MH.	Nat Chem Biol	10.1038/s41589-019-0400-9	2020
	Streptomyces colonosanans sp. nov., A Novel Actinobacterium Isolated from Malaysia Mangrove Soil Exhibiting Antioxidative Activity and Cytotoxic Potential against Human Colon Cancer Cell Lines.	Law JW, Ser HL, Duangjai A, Saokaew S, Bukhari SI, Khan TM, Ab Mutalib NS, Chan KG, Goh BH, Lee LH.	Front Microbiol	10.3389/fmicb.2017.00877	2017
Phylogeny	Streptomyces humi sp. nov., an actinobacterium isolated from soil of a mangrove forest.	Zainal N, Ser HL, Yin WF, Tee KK, Lee LH, Chan KG	Antonie Van Leeuwenhoek	10.1007/s10482-016-0653-1	2016

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24265	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42174
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#69354	Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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"Streptomyces humi" (DSM 42174, MCCC 1K00505, MUSC 119)

Name and taxonomic classification

Morphology

Colony morphology

Multicellular morphology

Pigmentation

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Halophily

Metabolite utilization

Enzymes

API coryne

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_001005085

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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