Name: Streptomyces humi DSM 42174
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132476

Type strain:

Species: Streptomyces humi

Culture col. no.: DSM 42174, MCCC 1K00505, MUSC 119

Strain history: <- L.-H. Lee, Monash University Malaya, Malaysia; MUSC 119

NCBI tax ID(s): 1428620 (species)

Section

Streptomyces humi DSM 42174 is a mesophilic bacterium that builds an aerial mycelium and was isolated from mangrove sediment.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Kitasatosporales*
	Family	*Streptomycetaceae*
	Genus	*Streptomyces*
	Species	"Streptomyces humi"
	Full Scientific Name (LPSN)	Streptomyces humi Zainal et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #69354]	Colony color	Grey beige (1019)
[Ref.: #69354]	Cultivation medium used	ISP 6

[Ref.: #69354]	Colony color	Grey beige (1019)
[Ref.: #69354]	Cultivation medium used	suter without tyrosine

[Ref.: #69354]	Colony color	Clay brown (8003)
[Ref.: #69354]	Cultivation medium used	ISP 2

[Ref.: #69354]	Colony color	Brown beige (1011)
[Ref.: #69354]	Cultivation medium used	ISP 3

[Ref.: #69354]	Colony color	Brown beige (1011)
[Ref.: #69354]	Cultivation medium used	ISP 4

[Ref.: #69354]	Colony color	Nut brown (8011)
[Ref.: #69354]	Cultivation medium used	ISP 5

[Ref.: #69354]	Colony color	Sepia brown (8014)
[Ref.: #69354]	Cultivation medium used	ISP 7

[Ref.: #69354]	Colony color	Umbra grey (7022)
[Ref.: #69354]	Cultivation medium used	suter with tyrosine

[Ref.: #69354]	Pigment production	yes
[Ref.: #69354]	Pigment name	Melanin
[Ref.: #69354]	Pigment production	yes
[Ref.: #69354]	Pigmentation color	Ochre brown (8001), copper brown (8004), brown beige (1011), clay brown (8003), olive brown (8008), fawn brown (8007), jet black (9005)
[Ref.: #69354]	Pigment name	soluble pigment

[Ref.: #69354]	Multicellular complex forming ability	yes
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Multicellular complex color	Stone grey (7030)
[Ref.: #69354]	Medium Name (multicellularity)	ISP 2

[Ref.: #69354]	Multicellular complex forming ability	yes
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Multicellular complex color	Stone grey (7030)
[Ref.: #69354]	Medium Name (multicellularity)	ISP 3

[Ref.: #69354]	Multicellular complex forming ability	yes
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Multicellular complex color	Light ivory (1015)
[Ref.: #69354]	Medium Name (multicellularity)	ISP 4

[Ref.: #69354]	Multicellular complex forming ability	yes
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Multicellular complex color	Stone grey (7030)
[Ref.: #69354]	Medium Name (multicellularity)	ISP 5

[Ref.: #69354]	Multicellular complex forming ability	no
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Medium Name (multicellularity)	ISP 6

[Ref.: #69354]	Multicellular complex forming ability	yes
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Multicellular complex color	Grey beige (1019)
[Ref.: #69354]	Medium Name (multicellularity)	ISP 7

[Ref.: #69354]	Multicellular complex forming ability	no
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Medium Name (multicellularity)	suter with tyrosine

[Ref.: #69354]	Multicellular complex forming ability	no
[Ref.: #69354]	Multicellular complex name	Aerial mycelium
[Ref.: #69354]	Medium Name (multicellularity)	suter without tyrosine

Multimedia content

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Caption:

Medium 65 28°C

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Intellectual property rights:

[Ref.: #69354]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69354]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

[Ref.: #69354]

Caption:

Plates (65, ISP2, ISP3, ISP4, ISP5, ISP7)

[Ref.: #69354]

Intellectual property rights:

Helmholtz-Zentrum für Infektionsforschung GmbH

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24265]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #24265]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24265]			growth	28 °C

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Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #69354]		NaCl		growth	0-5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #69354]	arabinose ChEBI	+	growth
[Ref.: #69354]	cellulose ChEBI	-	growth
[Ref.: #68379]	D-glucose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-mannitol ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-ribose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	D-xylose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	esculin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69354]	fructose ChEBI	+	growth
[Ref.: #68379]	gelatin ChEBI	+	hydrolysis	* from API Coryne
[Ref.: #69354]	glucose ChEBI	+	growth
[Ref.: #68379]	glycogen ChEBI	-	fermentation	* from API Coryne
[Ref.: #69354]	inositol ChEBI	+	growth
[Ref.: #68379]	lactose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	maltose ChEBI	-	fermentation	* from API Coryne
[Ref.: #69354]	mannose ChEBI	+	growth
[Ref.: #68379]	nitrate ChEBI	-	reduction	* from API Coryne
[Ref.: #69354]	raffinose ChEBI	+	growth
[Ref.: #69354]	rhamnose ChEBI	+	growth
[Ref.: #69354]	sucrose ChEBI	+	growth
[Ref.: #68379]	sucrose ChEBI	-	fermentation	* from API Coryne
[Ref.: #68379]	urea ChEBI	-	hydrolysis	* from API Coryne
[Ref.: #69354]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68379]	alkaline phosphatase	+	3.1.3.1	* from API Coryne, API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68379]	alpha-glucosidase	-	3.2.1.20	* from API Coryne
[Ref.: #68382]	alpha-mannosidase	+	3.2.1.24	* from API zym
[Ref.: #68379]	beta-galactosidase	+	3.2.1.23	* from API Coryne, API zym
[Ref.: #68379]	beta-glucosidase	+	3.2.1.21	* from API Coryne, API zym
[Ref.: #68379]	beta-glucuronidase	-	3.2.1.31	* from API Coryne, API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68379]	gelatinase	+		* from API Coryne
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68379]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API Coryne, API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #68379]	pyrazinamidase	-	3.5.1.B15	* from API Coryne
[Ref.: #68379]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API Coryne
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #68379]	urease	-	3.5.1.5	* from API Coryne
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Coryne:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitrateNIT	PyrazinamidasePYZ	Pyrrolidonyl arylamidasePYRA	Alkaline phosphatasePAL	beta-Glucuronidasebeta GUR	beta-Galactosidasebeta GAL	alpha-Glucosidasealpha GLU	N-Acetyl-beta-Glucosidasebeta NAG	Esculin hydrolysis/beta-GlucosidaseESC	Urease/urea hydrolysisURE	Gelatinase/gelatin hydrolysisGEL	Control fermentationControl	Fermentation of D-glucoseGLU	Fermentation of D-riboseRIB	Fermentation of D-xyloseXYL	Fermentation of D-mannitolMAN	Fermentation of maltoseMAL	Fermentation of lactoseLAC	Fermentation of sucroseSAC	Fermentation of glycogenGLYG	CatalaseCAT
[Ref.: #69354]	3847	-	-	-	+	-	+	-	-	+	-	+	not determinedn.d.	-	-	-	-	-	-	-	-	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #69354]	6031	not determinedn.d.	+	+/-	+	+/-	+	+	+/-	-	-	+	+	+/-	+	-	+/-	+	-	+	+/-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24265]	Sample type/isolated from	mangrove sediment
[Ref.: #24265]	Geographic location (country and/or sea, region)	Tanjung Lumpur in the State of Pahang (3° 48' 3.2'' N, 103° 20' 11.0''E)
[Ref.: #24265]	Country	Malaysia
[Ref.: #24265]	Country ISO 3 Code	MYS
[Ref.: #24265]	Continent	Asia
[Ref.: #24265]	Geographic location	3.8009°/103.3360°
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Environmental	#Aquatic	#Sediment
#Host	#Plants	#Tree

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24265]	Streptomyces humi strain MUSC 119 16S ribosomal RNA gene, partial sequence	KJ632661	1488	ENA	1428620 tax ID

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GC-content

72.6 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24265]

Culture collection no.

DSM 42174, MCCC 1K00505, MUSC 119

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces humi sp. nov., an actinobacterium isolated from soil of a mangrove forest.	Zainal N, Ser HL, Yin WF, Tee KK, Lee LH, Chan KG	Antonie Van Leeuwenhoek	10.1007/s10482-016-0653-1	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24265

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 42174

#68379

Automatically annotated from API Coryne .

#68382

Automatically annotated from API zym .

#69354

Wink, J.: Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig .

* These data were automatically processed and therefore are not curated

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