Name: Corynebacterium jeddahense JCB
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132470

Type strain:

Species: Corynebacterium jeddahense

Strain Designation: JCB

Culture col. no.: DSM 45997, CSUR P778

Strain history: <- J.-C. Lagier, Hopital de la Timone, Marseille; JCB

NCBI tax ID(s): 1414719 (species)

SI-ID 403520

DSM 45997

Section

Corynebacterium jeddahense JCB is a mesophilic bacterium that was isolated from human feces of 24 year-old male who suffered from morbid obesity.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Mycobacteriales*
	Family	*Corynebacteriaceae*
	Genus	*Corynebacterium*
	Species	**Corynebacterium jeddahense**
	Full Scientific Name (LPSN)	Corynebacterium jeddahense Edouard et al. 2017

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24259]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #24259]

Culture medium growth

[Ref.: #24259]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24259]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24259]			growth	37 °C

[Ref.: #24259]

Temperature range

mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24259]	Sample type/isolated from	human feces of 24 year-old male who suffered from morbid obesity
[Ref.: #24259]	Geographic location (country and/or sea, region)	Jeddah (place of residence)
[Ref.: #24259]	Country	Saudi Arabia
[Ref.: #24259]	Country ISO 3 Code	SAU
[Ref.: #24259]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Human	#Male
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence HG726038 (>99% sequence identity) for Corynebacterium jeddahense subclade from Microbeatlas

Aquatic Samples	97
Soil Samples	16
Animal Samples	3153
Plant Samples	8
Total Samples	3274

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24259]	Corynebacterium sp. JCB partial 16S rRNA gene, isolate JCB	HG726038	1512	ENA	1414719 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Corynebacterium jeddahense JCB	GCA_000577555	contig	GenBank	1414719 tax ID	*
[Ref.: #66792]	Corynebacterium jeddahense JCB	2617271191	draft	JGI IMG/M	1414719 tax ID	*
[Ref.: #66792]	Corynebacterium jeddahense DSM 45997	GCA_028609865	complete	GenBank	1414719 tax ID	*

[Ref.: #24259]

GC-content

67.2 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Corynebacterium jeddahense DSM 45997 NCBI: GCA_028609865.1
[Ref.: #69480]	motile	no	93.421	no
[Ref.: #69480]	flagellated	no	96.948	no
[Ref.: #69480]	gram-positive	yes	94.172	no
[Ref.: #69480]	anaerobic	no	98.54	no
[Ref.: #69480]	aerobic	no	70.214	no
[Ref.: #69480]	halophile	yes	69.886	no
[Ref.: #69480]	spore-forming	no	92.741	no
[Ref.: #69480]	glucose-ferment	no	64.829	no
[Ref.: #69480]	thermophile	no	93.552	yes
[Ref.: #69480]	glucose-util	yes	81.025	no

Availability in culture collections External links

[Ref.: #24259]

Culture collection no.

DSM 45997, CSUR P778

[Ref.: #90804]

SI-ID 403520

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24259

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45997

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90804

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403520.1 )

* These data were automatically processed and therefore are not curated

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Corynebacterium jeddahense DSM 45997

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