Corynebacterium jeddahense (DSM 45997, CSUR P778, JCB)

Name: Corynebacterium jeddahense (DSM 45997, CSUR P778, JCB)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132470

Type strain

Strain Designation JCB

Culture col. no. DSM 45997 CSUR P778 JCB

NCBI tax ID(s) 1414719

Special Collections DSMZ Cadoret human gut

Links

Corynebacterium jeddahense JCB is a mesophilic prokaryote that was isolated from human feces of 24 year-old male who suffered from morbid obesity.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 403520

DSM 45997

@ref 20215

Last LPSN update 2025-12-16 10:01:31

Domain Bacillati

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Corynebacteriaceae

Genus Corynebacterium

Species Corynebacterium jeddahense

Full scientific name Corynebacterium jeddahense Edouard et al. 2017

Morphology

Cell morphology

@ref	Motility	Confidence
125438		96
125439		96.8
125439		91.8

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24259	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24259	positive	growth	37	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		91.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	#Male
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24259	human feces of 24 year-old male who suffered from morbid obesity	Jeddah (place of residence)	Saudi Arabia	SAU	Asia

Taxonmaps

69479

Global distribution of 16S sequence HG726038 (>99% sequence identity) for Corynebacterium jeddahense subclade from Microbeatlas

Aquatic Samples	97
Soil Samples	16
Animal Samples	3153
Plant Samples	8
Total Samples	3274

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM2860986v1 assembly for Corynebacterium jeddahense DSM 45997	complete	GCA_028609865	1414719.7	8048440569	1414719	97.23
66792	JCB assembly for Corynebacterium jeddahense JCB	contig	GCA_000577555	1414719.3	2617271191	1414719	26.61

Genome browser: GCA_028609865

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24259	Corynebacterium sp. JCB partial 16S rRNA gene, isolate JCB	HG726038	1512		1414719

GC content

@ref	GC-content (mol%)	Method
24259	67.2	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Corynebacterium jeddahense DSM 45997
NCBI: GCA_028609865

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	91.20	no
125439	motility	BacteriaNetⓘ	no	91.80	no
125439	gram_stain	BacteriaNetⓘ	positive	96.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	microaerophile	87.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Corynebacterium jeddahense DSM 45997
NCBI: GCA_028609865.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.01	no
125438	anaerobic	anaerobicⓘ	no	95.30	no
125438	aerobic	aerobicⓘ	no	55.10	no
125438	spore-forming	spore-formingⓘ	no	77.69	no
125438	thermophilic	thermophileⓘ	no	93.50	no
125438	flagellated	motile2+ⓘ	no	96.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Non-contiguous finished genome sequence and description of Corynebacterium jeddahense sp. nov.	Edouard S, Bibi F, Dhamodharan R, Lagier JC, Azhar EI, Robert C, Caputo A, Yasir M, Jiman-Fatani AA, Alawi M, Fournier PE, Raoult D.	Stand Genomic Sci	10.4056/sigs.5561028	2014

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24259	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 45997
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Corynebacterium jeddahense (DSM 45997, CSUR P778, JCB)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_028609865

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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