Streptomyces yangpuensis (DSM 100336, CGMCC 4.7256, fd2-tb)

Name: Streptomyces yangpuensis (DSM 100336, CGMCC 4.7256, fd2-tb)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132432

Type strain

Strain Designation fd2-tb

Culture col. no. DSM 100336 CGMCC 4.7256 fd2-tb

NCBI tax ID(s) 1648182

Special Collections DSMZ Literature strains

History DSMZ <- B. Tang, Fudan University, Shanghai, China; fd2-tb

Links

Streptomyces yangpuensis fd2-tb is an aerobe, spore-forming, Gram-positive bacterium that was isolated from soil.

spore-forming Gram-positive aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405620

DSM 100336

@ref 20215

Last LPSN update 2026-05-29 08:37:51

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Kitasatosporales

Family Streptomycetaceae

Genus Streptomyces

Species Streptomyces yangpuensis

Full scientific name Streptomyces yangpuensis Tang et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Confidence
43758	positive
125438	positive	91.116
125439	positive	97.347
125439		94.882

Multimedia

@ref:	24221
multimedia content:	DSM_100336.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_100336.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
24221	ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)	Medium recipe at MediaDive	Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
43758	Gause's medium
43758	GYM
43758	ISP 2
43758	ISP 3
43758	ISP 4
24221	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)	Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24221	STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)	Medium recipe at MediaDive	Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 20.0 g/l Starch 10.0 g/l (NH4)2SO4 2.0 g/l CaCO3 2.0 g/l K2HPO4 1.0 g/l MgSO4 x 7 H2O 1.0 g/l NaCl 1.0 g/l FeSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l ZnSO4 x 7 H2O 0.001 g/l Distilled water
43758	ISP 5
43758	ISP 6
43758	Nutrient agar (NA)

Culture temp

@ref	Growth	Type	Temperature (°C)
24221	positive	growth	28
43758	positive	growth	10-40
43758	positive	optimum	28-30

Culture pH

@ref	Ability	Type	PH	PH range
43758	positive	growth	5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43758	aerobe
125439	obligate aerobe	98.014

Spore formation

@ref	Spore description	Type of spore	Spore formation	Confidence
43758	Oval with a line pattern on their surface	spore
125439				97.668

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43758	NaCl	positive	growth	0-4 %(w/v)
43758	NaCl	positive	optimum	0-2 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43758	29016 ChEBI	arginine	+	nitrogen source
43758	17057 ChEBI	cellobiose	+	carbon source
43758	15824 ChEBI	D-fructose	-	carbon source
43758	12936 ChEBI	D-galactose	-	carbon source
43758	17634 ChEBI	D-glucose	+	carbon source
43758	28225 ChEBI	D-leucine	-	nitrogen source
43758	23652 ChEBI	dextrin	+	carbon source
43758	16449 ChEBI	dl-alanine	-	nitrogen source
43758	15428 ChEBI	glycine	+	nitrogen source
43758	24898 ChEBI	isoleucine	-	nitrogen source
43758	30849 ChEBI	L-arabinose	-	carbon source
43758	17196 ChEBI	L-asparagine	+	nitrogen source
43758	17561 ChEBI	L-cysteine	-	nitrogen source
43758	15971 ChEBI	L-histidine	-	nitrogen source
43758	15603 ChEBI	L-leucine	-	nitrogen source
43758	16643 ChEBI	L-methionine	-	nitrogen source
43758	17203 ChEBI	L-proline	-	nitrogen source
43758	62345 ChEBI	L-rhamnose	+	carbon source
43758	17115 ChEBI	L-serine	-	nitrogen source
43758	16857 ChEBI	L-threonine	-	nitrogen source
43758	17895 ChEBI	L-tyrosine	-	nitrogen source
43758	17306 ChEBI	maltose	+	carbon source
43758	28017 ChEBI	starch	+	carbon source
43758	17992 ChEBI	sucrose	-	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
24221	soil	Shanghai, Yangpu district, Fudan University (31° 30' N 121° 51' E)	China	CHN	Asia	31.5	121.85 31.5/121.85
43758	Soil collected from Fudan University	Shanghai, Yangpu district	China	CHN	Asia	31.5	121.85 31.5/121.85	2013-09

Taxonmaps

69479

Global distribution of 16S sequence KP893387 (>99% sequence identity) for Streptomyces from Microbeatlas

Aquatic Samples	230
Soil Samples	4236
Animal Samples	299
Plant Samples	1307
Total Samples	6072

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24221	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM100529v1 assembly for Streptomyces yangpuensis fd2-tb	scaffold	GCA_001005295	2627853788	1648182	59.68

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24221	Streptomyces sp. fd2-tb 16S ribosomal RNA gene, partial sequence	KP893387	1485		1648182

GC content

@ref	GC-content (mol%)	Method
43758	72	genome sequence analysis
24221	72	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM100529v1 assembly for Streptomyces yangpuensis fd2-tb
NCBI: GCA_001005295

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.01	no
125439	motility	BacteriaNetⓘ	no	94.88	no
125439	gram_stain	BacteriaNetⓘ	positive	97.35	no
125439	spore_formation	BacteriaNetⓘ	yes	97.67	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Streptomyces yangpuensis fd2-tb
NCBI: GCA_001005295.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	91.12	no
125438	anaerobic	anaerobicⓘ	no	96.87	yes
125438	aerobic	aerobicⓘ	yes	87.85	yes
125438	spore-forming	spore-formingⓘ	yes	86.25	no
125438	thermophilic	thermophileⓘ	no	96.50	yes
125438	flagellated	motile2+ⓘ	no	85.60	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Streptomyces yangpuensis sp. nov., isolated from soil.	Tang B, Yu Y, Zhi X, Yang L, Cen X, Zhao G, Ding X	Int J Syst Evol Microbiol	10.1099/ijsem.0.000861	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24221	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100336
#43758	Biao Tang, Yucong Yu, Xiaoyang Zhi, Lingling Yang, Xufeng Cen, Guoping Zhao, Xiaoming Ding: Streptomyces yangpuensis sp. nov., isolated from soil. IJSEM 66: 1224 - 1229 2016 ( DOI 10.1099/ijsem.0.000861 , PubMed 26703868 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Streptomyces yangpuensis (DSM 100336, CGMCC 4.7256, fd2-tb)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001005295

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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