Amycolatopsis keratiniphila subsp. keratiniphila D2 is an obligate aerobe, mesophilic, Gram-positive prokaryote that builds an aerial mycelium and was isolated from soil sample from Omariya Agricultural Station.
Gram-positive rod-shaped obligate aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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Last LPSN update
2026-02-09 11:21:05 |
| Domain Bacteria |
| Phylum Actinomycetota |
| Class Actinomycetes |
| Order Pseudonocardiales |
| Family Pseudonocardiaceae |
| Genus Amycolatopsis |
| Species Amycolatopsis keratiniphila subsp. keratiniphila |
| Full scientific name Amycolatopsis keratiniphila subsp. keratiniphila (Al-Musallam et al. 2003) Wink et al. 2003 |
| BacDive ID | Other strains from Amycolatopsis keratiniphila subsp. keratiniphila (1) | Type strain |
|---|---|---|
| 13240 | A. keratiniphila subsp. keratiniphila FH 1893, DSM 44586, CIP 107964, JCM 12671, ... (type strain) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 11742 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | Medium recipe at MediaDive  | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water | ||
| 20056 | ISP 2 | Name: ISP 2 / Yeast Malt Agar (5265); 5265 Composition Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l Agar 15.0 g/l Preparation: Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.0 Usage: Maintenance and Taxonomy Organisms: All Actinomycetes | |||
| 20056 | ISP 3 | Name: ISP 3; 5315 Composition Dog oat flakes 20.0 g/l Trace element solution (5314) 2.5 ml/l Agar 18.0 g/l Preparation: Oat flakes are cooked for 20 minutes, trace element solution and agar are added (in the case of non rolled oat flakes the suspension has to bee filtrated). Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.8 Usage: Maintenance and taxonomy (e.g. SEM As liquid medium for metabolite production) Organisms: All Actinomycetes Trace element solution 5314 Name: Trace element solution 5314; 5314 Composition CaCl2 x H2O 3.0 g/l Fe-III-citrate 1.0 g/l MnSO4 0.2 g/l ZnCl2 0.1 g/l CuSO4 x 5 H2O 0.025 g/l Sodium tetra borate 0.2 g/l CoCl2 x 6 H2O 0.004 g/l Sodium molybdate 0.01 g/l Preparation: Use double destillated water. Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Trace element solution for different media Organisms: | |||
| 20056 | ISP 4 | Name: ISP 4; DSM 547 Solution I: Difco soluble starch, 10.0 g. Make a paste of the starch with a small amount of cold distilled water and bring to a volume of 500 ml. Solution II: CaCO3 2.0 g K2HPO4 (anhydrous) 1.0 g MgSO4 x 7 H2O 1.0 g NaCl 1.0 g (NH4)2SO4 2.0 g Distilled water 500.0 ml Trace salt solution (see below) 1.0 ml The pH should be between 7.0 and 7.4. Do not adjust if it is within this range. Mix solutions I and II together. Add 20.0 g agar. Liquify agar by steaming at 100°C for 10 to 20 min. Trace element solution: FeSO4 x 7 H2O 0.1 g MnCl2 x 4 H2O 0.1 g ZnSO4 x 7 H2O 0.1 g Distilled water 100.0 ml | |||
| 20056 | ISP 5 | Name: ISP 5 (5323) Composition L-Asparagine 1.0 g/l Glycerol 10.0 g/l K2HPO4 1.0 g/l Salt solution (see preparation) 1.0 ml/l Agar 20.0 g/l Preparation: Salt solution 1.0 g FeSO4 x 7 H2O 1.0 g MnCl2 x 4 H2O 1.0 g ZNSO4 x 7 H2O in 100 ml water Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.2 Usage: Maintenance and taxonomy Organisms: All Actinomycetes | |||
| 20056 | ISP 6 | Name: ISP 6 (5318) Composition Peptone 15.0 g/l Proteose peptose 5.0 g/l Ferric ammonium citrate 0.5 g/l Sodium glycerophosphate 1.0 g/l Sodium thiosulfate 0.08 g/l Yeast extract 1.0 g/l Agar 15.0 g/l Sterilisation: 20 minutes at 121°C pH before sterilisation: Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 20056 | ISP 7 | Name: ISP 7 (5322) Composition Glycerol 15.0 g/l L-Tyrosine 0.5 g/l L-Asparagine 1.0 g/l K2HPO4 0.5 g/l NaCl 0.5 g/l FeSO4 x 7 H2O 0.01 g/l Trace element solution 5343 1.0 ml/l Agar 20.0 Sterilisation: 20 minutes at 121°C pH before sterilisation: 7.3 Usage: Production of melanoid pigments Organisms: All Actinomycetes | |||
| 39972 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 120404 | CIP Medium 72 | Medium recipe at CIP | |||
| 120404 | CIP Medium 116 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 120404 | NaCl | positive | growth | 0-10 % |
| 67770 | Observationquinones: MK-9(H4) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 20056 | 22599 ChEBI | arabinose | + | ||
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 20056 | 62968 ChEBI | cellulose | + | ||
| 120404 | 16947 ChEBI | citrate | - | carbon source | |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | - | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | - | builds acid from | from API 50CH acid |
| 68379 | 17634 ChEBI | D-glucose | - | fermentation | from API Coryne |
| 68371 | 17634 ChEBI | D-glucose | - | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68379 | 16899 ChEBI | D-mannitol | - | fermentation | from API Coryne |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | - | builds acid from | from API 50CH acid |
| 68379 | 16988 ChEBI | D-ribose | - | fermentation | from API Coryne |
| 68371 | 16988 ChEBI | D-ribose | - | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68379 | 65327 ChEBI | D-xylose | - | fermentation | from API Coryne |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 120404 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68379 | 4853 ChEBI | esculin | + | hydrolysis | from API Coryne |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 20056 | 28757 ChEBI | fructose | + | ||
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68379 | 5291 ChEBI | gelatin | + | hydrolysis | from API Coryne |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | - | builds acid from | from API 50CH acid |
| 20056 | 17234 ChEBI | glucose | + | ||
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68379 | 28087 ChEBI | glycogen | - | fermentation | from API Coryne |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 120404 | 606565 ChEBI | hippurate | + | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68379 | 17716 ChEBI | lactose | - | fermentation | from API Coryne |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68379 | 17306 ChEBI | maltose | - | fermentation | from API Coryne |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 20056 | 29864 ChEBI | mannitol | + | ||
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 20056 | 17268 ChEBI | myo-inositol | + | ||
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | - | builds acid from | from API 50CH acid |
| 68379 | 17632 ChEBI | nitrate | - | reduction | from API Coryne |
| 120404 | 17632 ChEBI | nitrate | + | reduction | |
| 120404 | 17632 ChEBI | nitrate | - | respiration | |
| 120404 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 20056 | 16634 ChEBI | raffinose | + | ||
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 20056 | 26546 ChEBI | rhamnose | - | ||
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 20056 | 17992 ChEBI | sucrose | + | ||
| 68379 | 17992 ChEBI | sucrose | + | fermentation | from API Coryne |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68379 | 16199 ChEBI | urea | + | hydrolysis | from API Coryne |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| 20056 | 18222 ChEBI | xylose | + |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 120404 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 120404 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68379 | alkaline phosphatase | + | 3.1.3.1 | from API Coryne |
| 68382 | alpha-chymotrypsin | + | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68379 | alpha-glucosidase | + | 3.2.1.20 | from API Coryne |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 120404 | amylase | - | ||
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 120404 | beta-galactosidase | + | 3.2.1.23 | |
| 68379 | beta-galactosidase | + | 3.2.1.23 | from API Coryne |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68379 | beta-glucosidase | + | 3.2.1.21 | from API Coryne |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68379 | beta-glucuronidase | - | 3.2.1.31 | from API Coryne |
| 120404 | caseinase | + | 3.4.21.50 | |
| 120404 | catalase | + | 1.11.1.6 | |
| 120404 | DNase | - | ||
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120404 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 120404 | gelatinase | + | ||
| 68379 | gelatinase | + | from API Coryne | |
| 68368 | gelatinase | + | from API 20E | |
| 120404 | lecithinase | + | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 120404 | lipase | - | ||
| 120404 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API Coryne |
| 120404 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 120404 | oxidase | - | ||
| 120404 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 120404 | protease | + | ||
| 68379 | pyrazinamidase | - | 3.5.1.B15 | from API Coryne |
| 68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API Coryne |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 120404 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 120404 | tween esterase | - | ||
| 120404 | urease | + | 3.5.1.5 | |
| 68379 | urease | + | 3.5.1.5 | from API Coryne |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | + | from API zym |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | octane oxidation | 100 | 3 of 3 |   |
|
| 66794 | phenylmercury acetate degradation | 100 | 2 of 2 | |
|
| 66794 | kanosamine biosynthesis II | 100 | 2 of 2 | |
|
| 66794 | glycogen metabolism | 100 | 5 of 5 | |
|
| 66794 | cardiolipin biosynthesis | 100 | 7 of 7 | |
|
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | |
|
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | |
|
| 66794 | aminopropanol phosphate biosynthesis | 100 | 2 of 2 | |
|
| 66794 | phenylacetate degradation (aerobic) | 100 | 5 of 5 | |
|
| 66794 | enterobactin biosynthesis | 100 | 3 of 3 | |
|
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | |
|
| 66794 | propanol degradation | 100 | 7 of 7 | |
|
| 66794 | biotin biosynthesis | 100 | 4 of 4 | |
|
| 66794 | ethanol fermentation | 100 | 2 of 2 | |
|
| 66794 | acetate fermentation | 100 | 4 of 4 | |
|
| 66794 | molybdenum cofactor biosynthesis | 100 | 9 of 9 | |
|
| 66794 | threonine metabolism | 100 | 10 of 10 | |
|
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | |
|
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | |
|
| 66794 | glycolate and glyoxylate degradation | 100 | 6 of 6 | |
|
| 66794 | cellulose degradation | 100 | 5 of 5 | |
|
| 66794 | isoleucine metabolism | 100 | 8 of 8 | |
|
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | |
|
| 66794 | valine metabolism | 100 | 9 of 9 | |
|
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | |
|
| 66794 | ceramide biosynthesis | 100 | 1 of 1 | |
|
| 66794 | folate polyglutamylation | 100 | 1 of 1 | |
|
| 66794 | taurine degradation | 100 | 1 of 1 | |
|
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | |
|
| 66794 | butanoate fermentation | 100 | 4 of 4 | |
|
| 66794 | methane metabolism | 100 | 3 of 3 | |
|
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | |
|
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | |
|
| 66794 | adipate degradation | 100 | 2 of 2 | |
|
| 66794 | reductive acetyl coenzyme A pathway | 100 | 7 of 7 | |
|
| 66794 | sulfopterin metabolism | 100 | 4 of 4 | |
|
| 66794 | vitamin K metabolism | 100 | 5 of 5 | |
|
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | |
|
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | |
|
| 66794 | phenol degradation | 95 | 19 of 20 | |
|
| 66794 | flavin biosynthesis | 93.33 | 14 of 15 | |
|
| 66794 | heme metabolism | 92.86 | 13 of 14 | |
|
| 66794 | citric acid cycle | 92.86 | 13 of 14 | |
|
| 66794 | phenylalanine metabolism | 92.31 | 12 of 13 | |
|
| 66794 | leucine metabolism | 92.31 | 12 of 13 | |
|
| 66794 | proline metabolism | 90.91 | 10 of 11 | |
|
| 66794 | pentose phosphate pathway | 90.91 | 10 of 11 | |
|
| 66794 | serine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | aspartate and asparagine metabolism | 88.89 | 8 of 9 | |
|
| 66794 | daunorubicin biosynthesis | 88.89 | 8 of 9 | |
|
| 66794 | NAD metabolism | 88.89 | 16 of 18 | |
|
| 66794 | CO2 fixation in Crenarchaeota | 88.89 | 8 of 9 | |
|
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | |
|
| 66794 | 4-hydroxymandelate degradation | 88.89 | 8 of 9 | |
|
| 66794 | purine metabolism | 88.3 | 83 of 94 | |
|
| 66794 | vitamin B12 metabolism | 88.24 | 30 of 34 | |
|
| 66794 | glycolysis | 88.24 | 15 of 17 | |
|
| 66794 | ketogluconate metabolism | 87.5 | 7 of 8 | |
|
| 66794 | peptidoglycan biosynthesis | 86.67 | 13 of 15 | |
|
| 66794 | alanine metabolism | 86.21 | 25 of 29 | |
|
| 66794 | aclacinomycin biosynthesis | 85.71 | 6 of 7 | |
|
| 66794 | glutathione metabolism | 85.71 | 12 of 14 | |
|
| 66794 | glutamate and glutamine metabolism | 85.71 | 24 of 28 | |
|
| 66794 | urea cycle | 84.62 | 11 of 13 | |
|
| 66794 | tryptophan metabolism | 84.21 | 32 of 38 | |
|
| 66794 | arginine metabolism | 83.33 | 20 of 24 | |
|
| 66794 | histidine metabolism | 82.76 | 24 of 29 | |
|
| 66794 | creatinine degradation | 80 | 4 of 5 | |
|
| 66794 | factor 420 biosynthesis | 80 | 4 of 5 | |
|
| 66794 | myo-inositol biosynthesis | 80 | 8 of 10 | |
|
| 66794 | 3-chlorocatechol degradation | 80 | 4 of 5 | |
|
| 66794 | ethylmalonyl-CoA pathway | 80 | 4 of 5 | |
|
| 66794 | propionate fermentation | 80 | 8 of 10 | |
|
| 66794 | 4-hydroxyphenylacetate degradation | 80 | 8 of 10 | |
|
| 66794 | gallate degradation | 80 | 4 of 5 | |
|
| 66794 | pyrimidine metabolism | 80 | 36 of 45 | |
|
| 66794 | 3-phenylpropionate degradation | 80 | 12 of 15 | |
|
| 66794 | photosynthesis | 78.57 | 11 of 14 | |
|
| 66794 | tyrosine metabolism | 78.57 | 11 of 14 | |
|
| 66794 | allantoin degradation | 77.78 | 7 of 9 | |
|
| 66794 | cysteine metabolism | 77.78 | 14 of 18 | |
|
| 66794 | methionine metabolism | 76.92 | 20 of 26 | |
|
| 66794 | degradation of sugar acids | 76 | 19 of 25 | |
|
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | |
|
| 66794 | dTDPLrhamnose biosynthesis | 75 | 6 of 8 | |
|
| 66794 | C4 and CAM-carbon fixation | 75 | 6 of 8 | |
|
| 66794 | gluconeogenesis | 75 | 6 of 8 | |
|
| 66794 | degradation of pentoses | 75 | 21 of 28 | |
|
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 75 | 6 of 8 | |
|
| 66794 | lactate fermentation | 75 | 3 of 4 | |
|
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | |
|
| 66794 | cyclohexanol degradation | 75 | 3 of 4 | |
|
| 66794 | lipid metabolism | 74.19 | 23 of 31 | |
|
| 66794 | polyamine pathway | 73.91 | 17 of 23 | |
|
| 66794 | non-pathway related | 73.68 | 28 of 38 | |
|
| 66794 | oxidative phosphorylation | 72.53 | 66 of 91 | |
|
| 66794 | ubiquinone biosynthesis | 71.43 | 5 of 7 | |
|
| 66794 | tetrahydrofolate metabolism | 71.43 | 10 of 14 | |
|
| 66794 | starch degradation | 70 | 7 of 10 | |
|
| 66794 | vitamin B1 metabolism | 69.23 | 9 of 13 | |
|
| 66794 | isoprenoid biosynthesis | 69.23 | 18 of 26 | |
|
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | |
|
| 66794 | androgen and estrogen metabolism | 68.75 | 11 of 16 | |
|
| 66794 | ascorbate metabolism | 68.18 | 15 of 22 | |
|
| 66794 | IAA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | cyanate degradation | 66.67 | 2 of 3 | |
|
| 66794 | acetyl CoA biosynthesis | 66.67 | 2 of 3 | |
|
| 66794 | acetoin degradation | 66.67 | 2 of 3 | |
|
| 66794 | degradation of aromatic, nitrogen containing compounds | 66.67 | 8 of 12 | |
|
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | |
|
| 66794 | L-lactaldehyde degradation | 66.67 | 2 of 3 | |
|
| 66794 | metabolism of disaccharids | 63.64 | 7 of 11 | |
|
| 66794 | carotenoid biosynthesis | 63.64 | 14 of 22 | |
|
| 66794 | d-xylose degradation | 63.64 | 7 of 11 | |
|
| 66794 | lysine metabolism | 61.9 | 26 of 42 | |
|
| 66794 | sulfate reduction | 61.54 | 8 of 13 | |
|
| 66794 | phosphatidylethanolamine bioynthesis | 61.54 | 8 of 13 | |
|
| 66794 | glycine metabolism | 60 | 6 of 10 | |
|
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | |
|
| 66794 | arachidonate biosynthesis | 60 | 3 of 5 | |
|
| 66794 | bile acid biosynthesis, neutral pathway | 58.82 | 10 of 17 | |
|
| 66794 | degradation of hexoses | 55.56 | 10 of 18 | |
|
| 66794 | nitrate assimilation | 55.56 | 5 of 9 | |
|
| 66794 | vitamin B6 metabolism | 54.55 | 6 of 11 | |
|
| 66794 | phenylpropanoid biosynthesis | 53.85 | 7 of 13 | |
|
| 66794 | toluene degradation | 50 | 2 of 4 | |
|
| 66794 | carnitine metabolism | 50 | 4 of 8 | |
|
| 66794 | vitamin E metabolism | 50 | 2 of 4 | |
|
| 66794 | alginate biosynthesis | 50 | 2 of 4 | |
|
| 66794 | ribulose monophosphate pathway | 50 | 1 of 2 | |
|
| 66794 | mannosylglycerate biosynthesis | 50 | 1 of 2 | |
|
| 66794 | quinate degradation | 50 | 1 of 2 | |
|
| 66794 | sphingosine metabolism | 50 | 3 of 6 | |
|
| 66794 | selenocysteine biosynthesis | 50 | 3 of 6 | |
|
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | |
|
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | |
|
| 66794 | cholesterol biosynthesis | 45.45 | 5 of 11 | |
|
| 66794 | lipid A biosynthesis | 44.44 | 4 of 9 | |
|
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | |
|
| 66794 | bacilysin biosynthesis | 40 | 2 of 5 | |
|
| 66794 | D-cycloserine biosynthesis | 40 | 2 of 5 | |
|
| 66794 | elloramycin biosynthesis | 40 | 2 of 5 | |
|
| 66794 | arachidonic acid metabolism | 38.89 | 7 of 18 | |
|
| 66794 | (5R)-carbapenem carboxylate biosynthesis | 33.33 | 1 of 3 | |
|
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | |
|
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | |
|
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | |
|
| 66794 | catecholamine biosynthesis | 25 | 1 of 4 | |
|
| 66794 | chlorophyll metabolism | 22.22 | 4 of 18 | |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120404 | not determinedn.d. | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Global distribution of 16S sequence AJ278496 (>99% sequence identity) for Amycolatopsis from Microbeatlas 
 Aquatic Samples |
30 |
 Soil Samples |
689 |
 Animal Samples |
79 |
 Plant Samples |
635 |
| Total Samples | 1433 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM162036v2 assembly for Amycolatopsis keratiniphila subsp. keratiniphila DSM 44409 | scaffold | GCA_001620365   | 227715.4  | 2772190668  | 227715 | 40.06 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 11742 | Amycolatopsis keratinophila 16S rRNA gene, strain DSM 44409T | AJ278496 | 1405 |  | 129921 |
| @ref | GC-content (mol%) | Method | |
|---|---|---|---|
| 67770 | 69 | genome sequence analysis |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Antimicrobial Efficacy of 7-Hydroxyflavone Derived from Amycolatopsis sp. HSN-02 and Its Biocontrol Potential on Cercospora Leaf Spot Disease in Tomato Plants. | Math HH, Kumar RS, Chakraborty B, Almansour AI, Perumal K, Kantli GB, Nayaka S. | Antibiotics (Basel) | 10.3390/antibiotics12071175 | 2023 | | |
| Genetics | Genome-Based Taxonomic Classification of the Phylum Actinobacteria. | Nouioui I, Carro L, Garcia-Lopez M, Meier-Kolthoff JP, Woyke T, Kyrpides NC, Pukall R, Klenk HP, Goodfellow M, Goker M. | Front Microbiol | 10.3389/fmicb.2018.02007 | 2018 | |
| Metabolomic analysis in Amycolatopsis keratiniphila disrupted the competing ECO0501 pathway for enhancing the accumulation of vancomycin. | Chen S, Rao M, Jin W, Hu M, Chen D, Ge M, Mao W, Qian X. | World J Microbiol Biotechnol | 10.1007/s11274-024-04105-9 | 2024 | | |
| Enzymology | Exceptionally rich keratinolytic enzyme profile found in the rare actinomycetes Amycolatopsis keratiniphila D2T. | Espersen R, Huang Y, Falco FC, Hagglund P, Gernaey KV, Lange L, Svensson B. | Appl Microbiol Biotechnol | 10.1007/s00253-021-11579-2 | 2021 | |
| Identification of Antimicrobial Metabolites from the Egyptian Soil-Derived Amycolatopsis keratiniphila Revealed by Untargeted Metabolomics and Molecular Docking. | Hamed AA, Mohamed OG, Aboutabl EA, Fathy FI, Fawzy GA, El-Shiekh RA, Al-Karmalawy AA, Al-Taweel AM, Tripathi A, Elsayed TR. | Metabolites | 10.3390/metabo13050620 | 2023 | | |
| Genetics | Genome assembly, comparative genomics, and identification of genes/pathways underlying plant growth-promoting traits of an actinobacterial strain, Amycolatopsis sp. (BCA-696). | Gandham P, Vadla N, Saji A, Srinivas V, Ruperao P, Selvanayagam S, Saxena RK, Rathore A, Gopalakrishnan S, Thakur V. | Sci Rep | 10.1038/s41598-024-66835-y | 2024 | |
| Genetics | CRISPR/Cas9-mediated genome editing in vancomycin-producing strain Amycolatopsis keratiniphila. | Hu M, Chen S, Ni Y, Wei W, Mao W, Ge M, Qian X. | Front Bioeng Biotechnol | 10.3389/fbioe.2023.1141176 | 2023 | |
| A rare peptide scaffold in kineomicins, the glycopeptide antibiotics produced by Actinokineospora auranticolor DSM 44650. | Yushchuk O, Berini F, Zhong L, Ruckert-Reed C, Bernasconi E, Bartolone L, Busche T, Kalinowski J, Sussmuth RD, Marinelli F. | Commun Chem | 10.1038/s42004-025-01534-x | 2025 | | |
| Genetics Behind the Glycosylation Patterns in the Biosynthesis of Dalbaheptides. | Yushchuk O, Zhukrovska K, Berini F, Fedorenko V, Marinelli F. | Front Chem | 10.3389/fchem.2022.858708 | 2022 | | |
| Unveiling the substrate specificity of the ABC transporter Tba and its role in glycopeptide biosynthesis. | Gericke N, Beqaj D, Kronenberger T, Kulik A, Gavriilidou A, Franz-Wachtel M, Schoppmeier U, Harbig T, Rapp J, Grin I, Ziemert N, Link H, Nieselt K, Macek B, Wohlleben W, Stegmann E, Wagner S. | iScience | 10.1016/j.isci.2025.112135 | 2025 | | |
| Amycolatopsis from Desert Specialist Fungus-Growing Ants Suppresses Contaminant Fungi Using the Antibiotic ECO-0501. | Kim JH, Scherer G, Lumpkin DS, Rao K, Puentes Flores CD, Van Arnam EB. | Appl Environ Microbiol | 10.1128/aem.01838-22 | 2023 | | |
| Metabolism | Understanding the biosynthesis, metabolic regulation, and anti-phytopathogen activity of 3,7-dihydroxytropolone in Pseudomonas spp. | Moffat AD, Hoing L, Santos-Aberturas J, Markwalder T, Malone JG, Teufel R, Truman AW. | mBio | 10.1128/mbio.01022-24 | 2024 | |
| A genetics-free method for high-throughput discovery of cryptic microbial metabolites. | Xu F, Wu Y, Zhang C, Davis KM, Moon K, Bushin LB, Seyedsayamdost MR. | Nat Chem Biol | 10.1038/s41589-018-0193-2 | 2019 | | |
| Genetics | Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach. | Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC. | Front Microbiol | 10.3389/fmicb.2018.02281 | 2018 | |
| Taxonomic and functional characterization of a microbial community from a volcanic englacial ecosystem in Deception Island, Antarctica. | Martinez-Alonso E, Pena-Perez S, Serrano S, Garcia-Lopez E, Alcazar A, Cid C. | Sci Rep | 10.1038/s41598-019-47994-9 | 2019 | | |
| Synthetic Biology in Natural Product Biosynthesis. | Seshadri K, Abad AND, Nagasawa KK, Yost KM, Johnson CW, Dror MJ, Tang Y. | Chem Rev | 10.1021/acs.chemrev.4c00567 | 2025 | | |
| Phylogeny | Amycolatopsis decaplanina sp. nov., a novel member of the genus with unusual morphology. | Wink J, Gandhi J, Kroppenstedt RM, Seibert G, Straubler B, Schumann P, Stackebrandt E. | Int J Syst Evol Microbiol | 10.1099/ijs.0.02586-0 | 2004 | |
| Phylogeny | Amycolatopsis keratiniphila sp. nov., a novel keratinolytic soil actinomycete from Kuwait. | Al-Musallam AA, Al-Zarban SS, Fasasi YA, Kroppenstedt RM, Stackebrandt E | Int J Syst Evol Microbiol | 10.1099/ijs.0.02515-0 | 2003 | |
| Phylogeny | Amycolatopsis pittospori sp. nov., an endophytic actinobacterium isolated from native apricot tree and genome mining revealed the biosynthesis potential as antibiotic producer and plant growth promoter. | Kaewkla O, Franco CMM | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01519-5 | 2021 | |
| Phylogeny | Amycolatopsis magusensis sp. nov., isolated from soil. | Camas M, Sahin N, Sazak A, Sproer C, Klenk HP | Int J Syst Evol Microbiol | 10.1099/ijs.0.042770-0 | 2012 | |
| Phylogeny | Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov. | Wink JM, Kroppenstedt RM, Ganguli BN, Nadkarni SR, Schumann P, Seibert G, Stackebrandt E | Syst Appl Microbiol | 10.1078/072320203322337290 | 2003 | |
How to citeIf you want to cite this particular strain cite the following doi:
https://doi.org/10.13145/bacdive13242.20251217.10
When using BacDive for research please cite the following paper
BacDive in 2025: the core database for prokaryotic strain data
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