Paludisphaera borealis (DSM 28747, VKM B-2904, PX4)

Name: Paludisphaera borealis (DSM 28747, VKM B-2904, PX4)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132417

Type strain

Strain Designation PX4

Culture col. no. DSM 28747 VKM B-2904 PX4

NCBI tax ID(s) 1387353

Special Collections DSMZ Literature strains

History <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; PX4 <- I. S. Kulichevskaya

Links

Paludisphaera borealis PX4 is an aerobe, chemoorganotroph, Gram-negative bacterium that forms circular colonies and was isolated from boreal Sphagnum peat bog just above the oxic-anoxic interface.

Gram-negative sphere-shaped colony-forming aerobe chemoorganotroph genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400727

DSM 28747

@ref 20215

Last LPSN update 2026-02-09 11:31:42

Domain Bacteria

Phylum Planctomycetota

Class Planctomycetia

Order Isosphaerales

Family Isosphaeraceae

Genus Paludisphaera

Species Paludisphaera borealis

Full scientific name Paludisphaera borealis Kulichevskaya et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell shape	Motility	Confidence
43814	negative	1.5-2.5 µm	sphere-shaped
125438	negative				95.969

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43814	1-3 mm	Bright-pink	circular	Agar-solidified M31

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43814	Agar-solidified M31
24206	PALUDISPHAERA BOREALIS MEDIUM (PX4) (DSMZ Medium 1557)		Medium recipe at MediaDive	Name: PALUDISPHAERA BOREALIS MEDIUM (PX4) (DSMZ Medium 1557) Composition: Agar 18.0 g/l N-Acetylglucosamine 1.0 g/l MgSO4 x 7 H2O 0.594 g/l Na-ampicillin 0.2 g/l Nitrilotriacetic acid 0.2 g/l KH2PO4 0.1 g/l Glucose 0.1 g/l Yeast extract 0.1 g/l Peptone 0.1 g/l CaCl2 x 2 H2O 0.0668 g/l ZnSO4 x 7 H2O 0.001095 g/l FeSO4 x 7 H2O 0.0005 g/l Na-EDTA 0.00025 g/l (NH4)6Mo7O24 x 4 H2O 0.000185 g/l MnSO4 x H2O 0.000154 g/l CuSO4 x 5 H2O 3.92e-05 g/l Co(NO3)2 x 6 H2O 2.48e-05 g/l Na2B4O7 x 10 H2O 1.77e-05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24206	positive	growth	28
43814	positive	growth	6-30
43814	positive	optimum	15-25

Culture pH

@ref	Ability	Type	PH	PH range
43814	positive	optimum	5-5.5
43814	positive	growth	3.5-6.5	acidophile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43814	aerobe
125439	obligate aerobe	98.5

Nutrition type

43814

Typechemoorganotroph

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43814	NaCl	positive	growth	0-0.5 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43814	16449 ChEBI	alanine	-	assimilation
43814	16449 ChEBI	alanine	+	nitrogen source
43814	16134 ChEBI	ammonia	+	nitrogen source
43814	29016 ChEBI	arginine	-	assimilation
43814	22653 ChEBI	asparagine	-	assimilation
43814	22653 ChEBI	asparagine	+	nitrogen source
43814	35391 ChEBI	aspartate	-	assimilation
43814	16150 ChEBI	benzoate	-	assimilation
43814		casein	-	hydrolysis
43814	17057 ChEBI	cellobiose	+	carbon source
43814	62968 ChEBI	cellulose	-	hydrolysis
43814	17029 ChEBI	chitin	-	hydrolysis
43814	37397 ChEBI	chondroitin sulfate	-	hydrolysis
43814	16947 ChEBI	citrate	-	assimilation
43814	15356 ChEBI	cysteine	-	assimilation
43814	15748 ChEBI	D-glucuronate	-	assimilation
43814	27689 ChEBI	decanoate	-	assimilation
43814	4853 ChEBI	esculin	+	hydrolysis
43814	16236 ChEBI	ethanol	-	assimilation
43814	16842 ChEBI	formaldehyde	-	assimilation
43814	15740 ChEBI	formate	-	assimilation
43814	28757 ChEBI	fructose	+	carbon source
43814	5181 ChEBI	fucoidan	-	hydrolysis
43814	33984 ChEBI	fucose	-	assimilation
43814	29806 ChEBI	fumarate	-	assimilation
43814	28260 ChEBI	galactose	+	carbon source
43814	5291 ChEBI	gelatin	+	hydrolysis
43814	85248 ChEBI	gellan gum	+	hydrolysis
43814	17234 ChEBI	glucose	+	carbon source
43814	28300 ChEBI	glutamine	-	assimilation
43814	17859 ChEBI	glutaric acid	-	assimilation
43814	17754 ChEBI	glycerol	-	assimilation
43814	15428 ChEBI	glycine	-	assimilation
43814	27570 ChEBI	histidine	-	assimilation
43814	24898 ChEBI	isoleucine	-	assimilation
43814	16283 ChEBI	L-cystine	-	assimilation
43814	24996 ChEBI	lactate	-	assimilation
43814	17716 ChEBI	lactose	+	carbon source
43814	6364 ChEBI	laminarin	-	hydrolysis
43814	25017 ChEBI	leucine	-	assimilation
43814	79285 ChEBI	leucrose	-	assimilation
43814	6452 ChEBI	lichenin	+	hydrolysis
43814	25094 ChEBI	lysine	-	assimilation
43814	25115 ChEBI	malate	-	assimilation
43814	17306 ChEBI	maltose	+	carbon source
43814	29864 ChEBI	mannitol	-	assimilation
43814	37684 ChEBI	mannose	+	carbon source
43814	6731 ChEBI	melezitose	-	assimilation
43814	28053 ChEBI	melibiose	+	carbon source
43814	17790 ChEBI	methanol	-	assimilation
43814	16811 ChEBI	methionine	-	assimilation
43814	506227 ChEBI	N-acetylglucosamine	+	carbon source
43814	506227 ChEBI	N-acetylglucosamine	+	nitrogen source
43814	17632 ChEBI	nitrate	+	nitrogen source
43814	36405 ChEBI	norleucine	-	assimilation
43814	18257 ChEBI	ornithine	-	assimilation
43814		peptone	-	hydrolysis
43814		peptone	+	nitrogen source
43814	28044 ChEBI	phenylalanine	-	assimilation
43814	26271 ChEBI	proline	-	assimilation
43814	17272 ChEBI	propionate	-	assimilation
43814	27941 ChEBI	pullulan	-	hydrolysis
43814	15361 ChEBI	pyruvate	+	carbon source
43814	16634 ChEBI	raffinose	-	assimilation
43814	26546 ChEBI	rhamnose	+	carbon source
43814	33942 ChEBI	ribose	+	carbon source
43814	17814 ChEBI	salicin	+	carbon source
43814	17822 ChEBI	serine	-	assimilation
43814	27922 ChEBI	sorbose	-	assimilation
43814	9215 ChEBI	spectinomycin	+	hydrolysis
43814	28017 ChEBI	starch	-	assimilation
43814	28017 ChEBI	starch	-	hydrolysis
43814	30031 ChEBI	succinate	+	carbon source
43814	17992 ChEBI	sucrose	+	carbon source
43814	30929 ChEBI	tartrate	-	assimilation
43814	26986 ChEBI	threonine	-	assimilation
43814	27082 ChEBI	trehalose	+	carbon source
43814	27897 ChEBI	tryptophan	-	assimilation
43814	18186 ChEBI	tyrosine	-	assimilation
43814	16199 ChEBI	urea	-	assimilation
43814	27266 ChEBI	valine	-	assimilation
43814	27266 ChEBI	valine	+	nitrogen source
43814	37166 ChEBI	xylan	+	hydrolysis
43814	18222 ChEBI	xylose	+	carbon source
43814		yeast extract	+	nitrogen source

Antibiotic resistance

@ref	ChEBI	Metabolite	Resistance conc.	Sensitivity conc.
43814	28971	ampicillin	10000 µg (disc)
43814	17698	chloramphenicol	30000 µg (disc)
43814	17833	gentamicin		10000 µg (disc)
43814	6104	kanamycin		30000 µg (disc)
43814	6472	lincomycin	10000 µg (disc)
43814	7507	neomycin		10000 µg (disc)
43814	28368	novobiocin	30000 µg (disc)
43814	17076	streptomycin	10000 µg (disc)

Enzymes

@ref	Value	Activity	Ec
43814	acid phosphatase	+	3.1.3.2
43814	alkaline phosphatase	-	3.1.3.1
43814	alpha-fucosidase	-	3.2.1.51
43814	alpha-galactosidase	-	3.2.1.22
43814	alpha-mannosidase	-	3.2.1.24
43814	beta-galactosidase	+	3.2.1.23
43814	beta-glucuronidase	-	3.2.1.31
43814	catalase	+	1.11.1.6
43814	chymotrypsin	-	3.4.4.5
43814	cystine arylamidase	-	3.4.11.3
43814	cytochrome oxidase	+	1.9.3.1
43814	esterase (C 4)	+
43814	esterase Lipase (C 8)	+
43814	leucine arylamidase	+	3.4.11.1
43814	lipase (C 14)	-
43814	N-acetyl-beta-glucosaminidase	+	3.2.1.52
43814	phosphohydrolase	+
43814	trypsin	-	3.4.21.4
43814	urease	-	3.5.1.5
43814	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	hydrogen production	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	methylglyoxal degradation	100	5 of 5
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	glycogen metabolism	100	5 of 5
66794	kanosamine biosynthesis II	100	2 of 2
66794	3-chlorocatechol degradation	100	5 of 5
66794	aspartate and asparagine metabolism	100	9 of 9
66794	glycine betaine biosynthesis	100	5 of 5
66794	formaldehyde oxidation	100	3 of 3
66794	quinate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	lipoate biosynthesis	100	5 of 5
66794	folate polyglutamylation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	sulfopterin metabolism	100	4 of 4
66794	acetoin degradation	100	3 of 3
66794	coenzyme A metabolism	100	4 of 4
66794	ethanol fermentation	100	2 of 2
66794	palmitate biosynthesis	95.45	21 of 22
66794	phenylalanine metabolism	92.31	12 of 13
66794	pentose phosphate pathway	90.91	10 of 11
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	degradation of hexoses	88.89	16 of 18
66794	d-mannose degradation	88.89	8 of 9
66794	nitrate assimilation	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	methionine metabolism	88.46	23 of 26
66794	isoleucine metabolism	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	NAD metabolism	83.33	15 of 18
66794	proline metabolism	81.82	9 of 11
66794	degradation of sugar acids	80	20 of 25
66794	cellulose degradation	80	4 of 5
66794	gallate degradation	80	4 of 5
66794	methanofuran biosynthesis	80	4 of 5
66794	flavin biosynthesis	80	12 of 15
66794	degradation of pentoses	78.57	22 of 28
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	ppGpp biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glutamate and glutamine metabolism	75	21 of 28
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	methanogenesis from CO2	75	9 of 12
66794	pyrimidine metabolism	73.33	33 of 45
66794	alanine metabolism	72.41	21 of 29
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	glycolysis	70.59	12 of 17
66794	propionate fermentation	70	7 of 10
66794	myo-inositol biosynthesis	70	7 of 10
66794	phenol degradation	70	14 of 20
66794	lysine metabolism	69.05	29 of 42
66794	lipid metabolism	67.74	21 of 31
66794	4-hydroxymandelate degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	66.67	4 of 6
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	oxidative phosphorylation	64.84	59 of 91
66794	glutathione metabolism	64.29	9 of 14
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	sulfate reduction	61.54	8 of 13
66794	vitamin B1 metabolism	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	cysteine metabolism	61.11	11 of 18
66794	tryptophan metabolism	60.53	23 of 38
66794	phenylacetate degradation (aerobic)	60	3 of 5
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	histidine metabolism	58.62	17 of 29
66794	arginine metabolism	58.33	14 of 24
66794	tyrosine metabolism	57.14	8 of 14
66794	polyamine pathway	56.52	13 of 23
66794	degradation of sugar alcohols	56.25	9 of 16
66794	metabolism of disaccharids	54.55	6 of 11
66794	urea cycle	53.85	7 of 13
66794	bile acid biosynthesis, neutral pathway	52.94	9 of 17
66794	denitrification	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	carnitine metabolism	50	4 of 8
66794	lactate fermentation	50	2 of 4
66794	carotenoid biosynthesis	50	11 of 22
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ribulose monophosphate pathway	50	1 of 2
66794	resorcinol degradation	50	1 of 2
66794	sphingosine metabolism	50	3 of 6
66794	biotin biosynthesis	50	2 of 4
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	cis-vaccenate biosynthesis	50	1 of 2
66794	phenylmercury acetate degradation	50	1 of 2
66794	ketogluconate metabolism	50	4 of 8
66794	coenzyme M biosynthesis	50	5 of 10
66794	glycine metabolism	50	5 of 10
66794	vitamin E metabolism	50	2 of 4
66794	3-phenylpropionate degradation	46.67	7 of 15
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	cholesterol biosynthesis	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	elloramycin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	vitamin B6 metabolism	36.36	4 of 11
66794	d-xylose degradation	36.36	4 of 11
66794	peptidoglycan biosynthesis	33.33	5 of 15
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	methane metabolism	33.33	1 of 3
66794	enterobactin biosynthesis	33.33	1 of 3
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	vitamin B12 metabolism	29.41	10 of 34
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	alginate biosynthesis	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Wetland (Swamp)
#Host	#Plants	#Moss
#Climate	#Cold	#Tundra
#Host	#Plants	#Peat moss

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24206	boreal Sphagnum peat bog just above the oxic-anoxic interface	Sphagnum	Yaroslavl region (58° 14' N 38° 12' E)	Russia	RUS	Europe	58.2333	38.2 58.2333/38.2
43814	A boreal Sphagnum peat bog in Obukhovskoye		Obukhovskoye, Yaroslavl region	Russia	RUS	Europe	58.23	38.2 58.23/38.2

Taxonmaps

69479

Global distribution of 16S sequence KF467528 (>99% sequence identity) for Paludisphaera borealis subclade from Microbeatlas

Aquatic Samples	250
Soil Samples	1225
Animal Samples	95
Plant Samples	71
Total Samples	1641

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24206	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM195698v1 assembly for Paludisphaera borealis PX4	complete	GCA_001956985	1387353.3	2751185664	1387353	93.15

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24206	Paludisphaera borealis strain PX4 16S ribosomal RNA gene, complete sequence	KF467528	1503		1387353

GC content

@ref	GC-content (mol%)	Method
43814	66
24206	66	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Paludisphaera borealis strain PX4
PATRIC: 1387353.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	74.60	no
125439	motility	BacteriaNetⓘ	no	57.00	no
125439	gram_stain	BacteriaNetⓘ	positive	85.00	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Paludisphaera borealis PX4
NCBI: GCA_001956985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	95.97	yes
125438	anaerobic	anaerobicⓘ	no	85.67	no
125438	aerobic	aerobicⓘ	yes	73.87	yes
125438	spore-forming	spore-formingⓘ	no	72.83	no
125438	thermophilic	thermophileⓘ	no	94.09	yes
125438	flagellated	motile2+ⓘ	no	59.66	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Sewage sludge fertilization affects microbial community structure and its resistome in agricultural soils.	Serwecinska L, Font-Najera A, Strapagiel D, Lach J, Toloczko W, Boldak M, Urbaniak M.	Sci Rep	10.1038/s41598-024-71656-0	2024
Phylogeny	High Diversity of Planctomycetes in Soils of Two Lichen-Dominated Sub-Arctic Ecosystems of Northwestern Siberia.	Ivanova AA, Kulichevskaya IS, Merkel AY, Toshchakov SV, Dedysh SN.	Front Microbiol	10.3389/fmicb.2016.02065	2016
Phylogeny	Tautonia sociabilis gen. nov., sp. nov., a novel thermotolerant planctomycete, isolated from a 4000 m deep subterranean habitat.	Kovaleva OL, Elcheninov AG, Toshchakov SV, Novikov AA, Bonch-Osmolovskaya EA, Kublanov IV.	Int J Syst Evol Microbiol	10.1099/ijsem.0.003467	2019
	Tautonia plasticadhaerens sp. nov., a novel species in the family Isosphaeraceae isolated from an alga in a hydrothermal area of the Eolian Archipelago.	Jogler C, Wiegand S, Boedeker C, Heuer A, Peeters SH, Jogler M, Jetten MSM, Rohde M, Kallscheuer N.	Antonie Van Leeuwenhoek	10.1007/s10482-020-01424-3	2020
Phylogeny	Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.	Kulichevskaya IS, Ivanova AA, Suzina NE, Rijpstra WIC, Sinninghe Damste JS, Dedysh SN	Int J Syst Evol Microbiol	10.1099/ijsem.0.000799	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24206	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 28747
#43814	Irina S. Kulichevskaya, Anastasia A. Ivanova, Natalia E. Suzina, W. Irene C. Rijpstra, Jaap S. Sinninghe Damste, Svetlana N. Dedysh: Paludisphaera borealis gen. nov., sp. nov., a hydrolytic planctomycete from northern wetlands, and proposal of Isosphaeraceae fam. nov.. IJSEM 66: 837 - 844 2016 ( DOI 10.1099/ijsem.0.000799 , PubMed 26611145 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Paludisphaera borealis (DSM 28747, VKM B-2904, PX4)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Halophily

Metabolite utilization

Antibiotic resistance

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001956985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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