Strain identifier

BacDive ID: 132415

Type strain: Yes

Species: Deferrisoma palaeochoriense

Strain Designation: MAG-PB1

Culture col. no.: DSM 29363, JCM 30394

Strain history: I. Pérez-Rodríguez; Carnegie Inst. of Washington, USA; MAG-PB1.

NCBI tax ID(s): 1573172 (species)

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Deferrisoma palaeochoriense MAG-PB1 is an obligate anaerobe, mixotroph, Gram-negative bacterium that was isolated from shallow-water hydrothermal vent.

  1. Gram-negative
  2. motile
  3. rod-shaped
  4. mixotroph
  5. obligate anaerobe
  6. 16S sequence
  7. Bacteria
  • Information on culture and growth conditions Culture and growth conditionsarrow_down
    • [Ref.: #24204] Culture medium
    THERMOSULFURIMONAS MEDIUM (DSMZ Medium 1210a)
    [Ref.: #24204] Culture medium growth Yes
    [Ref.: #24204] Culture medium link Medium recipe at MediaDive MediaDive
    [Ref.: #24204] Culture medium composition expand / minimize
    Temperatures Kind of temperaturearrow to sort Temperaturearrow to sort
    [Ref.: #24204] growth 60  °C
    [Ref.: #44025] growth 30-70  °C
    [Ref.: #44025] optimum 60  °C
    [Ref.: #67770] growth 60  °C
    pH Kind of pHarrow to sort pHarrow to sort
    [Ref.: #44025] optimum 6
    [Ref.: #44025] growth 5.5-8.0
  • Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental informationarrow_down
    • [Ref.: #24204] Sample type/isolated from shallow-water hydrothermal vent
    [Ref.: #24204] Geographic location (country and/or sea, region) Mediterranean Sea, Palaeochori Bay off the coast of the island of Milos
    [Ref.: #24204] Country Greece
    [Ref.: #24204] Country ISO 3 Code GRC
    [Ref.: #24204] Continent Europe
     
    [Ref.: #44025] Sample type/isolated from sediments of an active shallow-water vent
    [Ref.: #44025] Sampling date 2012-05
    [Ref.: #44025] Geographic location (country and/or sea, region) Palaeochori Bay, Milos
    [Ref.: #44025] Country Greece
    [Ref.: #44025] Country ISO 3 Code GRC
    [Ref.: #44025] Continent Europe
    [Ref.: #44025] Enrichment culture modified basal medium described by Slobodkina et al. 2009
    [Ref.: #44025] Enrichment culture composition KH2PO4 (0.33 g), (NH4)2SO4 (0.5 g), KCl (0.33 g), MgCl2 . 6H2O (4.0 g), CaCl2 . 2H2O (0.33 g), NaHCO3 (0.8 g), NaCl (18.0 g), 1 ml trace-element solution SL-10 (Sleat et al., 1984), 1 ml selenite-tungstate solution (Tschech & Schink, 1985) and 1 ml vitamin solution (Wolin et al., 1963). The pH of the medium was not adjusted and no reducing agent was added. Fe(III) was provided in the form of amorphous Fe(III) oxide (88 mmol/l), synthesized by titrating a solution of FeCl3 x 6H2O with NaOH (10 %,
    [Ref.: #44025] Isolation/enrichment procedure Upon arrival at the eld laboratory, samples were processed and stored at 4°C under a N2 (100%, v/v; 200 kPa) atmosphere. 10 consecutive series of dilutions at 50°C
     
    [Ref.: #67770] Sample type/isolated from Shallow-water hydrothermal vent system in Palaeochrobi Bay off the coast of the island of Milos
    [Ref.: #67770] Country Greece
    [Ref.: #67770] Country ISO 3 Code GRC
    [Ref.: #67770] Continent Europe
    * marker position based on {}
    Isolation sources categories
    #Condition #Thermophilic (>45°C)    -   
    #Environmental #Terrestrial #Coast
    #Environmental #Aquatic #Hydrothermal vent
    #Environmental #Aquatic #Sediment
    What are isolation sources categories?
    [Ref.: #69479]

    Global distribution of 16S sequence KM386664 (>99% sequence identity) for Deferrisoma palaeochoriense subclade from Microbeatlas

    Aquatic Samples 101
    Soil Samples 5
    Animal Samples 1
    Plant Samples 1
    Total Samples 108

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