Name: Paenibacillus etheri SH7
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132397

Type strain:

Species: Paenibacillus etheri

Strain Designation: SH7

Culture col. no.: DSM 29760, CECT 8558

Strain history: <- C. Pozo-Llorente, University of Granada, Spain; SH7

NCBI tax ID(s): 1306852 (species)

SI-ID 405677

DSM 29760

Special Collections

Section

Paenibacillus etheri SH7 is a facultative anaerobe, non-halophilic, spore-forming bacterium that forms oval colonies and was isolated from hydrocarbon contaminated soil from a pilot plant.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
facultative anaerobe
non-halophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Paenibacillus*
	Species	**Paenibacillus etheri**
	Full Scientific Name (LPSN)	Paenibacillus etheri Guisado et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43810]	Gram stain	positive

[Ref.: #43810]	Cell length	3.2 µm

[Ref.: #43810]	Cell width	0.6 µm

[Ref.: #43810]	Cell shape	rod-shaped

[Ref.: #43810]	Motility	yes

[Ref.: #43810]	Flagellum arrangement	peritrichous

[Ref.: #43810]	Colony size	1.5-5 mm
[Ref.: #43810]	Colony color	Cream
[Ref.: #43810]	Colony shape	oval
[Ref.: #43810]	Incubation period	3 days
[Ref.: #43810]	Cultivation medium used	TSA agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43810]

Culture medium

Trypticase Soy Agar (TSA)

[Ref.: #43810]

Culture medium growth

[Ref.: #24186]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #24186]

Culture medium growth

[Ref.: #24186]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24186]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24186]	growth	30 °C
[Ref.: #43810]	growth	5-50 °C
[Ref.: #43810]	optimum	30 °C

	pH	Kind of pH		pH
[Ref.: #43810]			optimum	7.5
[Ref.: #43810]			growth	7-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43810]

Oxygen tolerance

facultative anaerobe

[Ref.: #43810]	Spore description	Subterminal ellipsoidal endospores
[Ref.: #43810]	Type of spore	endospore
[Ref.: #43810]	Ability of spore formation	yes
[Ref.: #69480]	Ability of spore formation	yes Confidence in %92.203
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100

[Ref.: #43810]	Halophily / tolerance level	non-halophilic
[Ref.: #43810]	Halophily / tolerance level	non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43810]		NaCl		maximum	0.8	%(w/v)
[Ref.: #43810]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43810]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43810]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43810]	adipate ChEBI	-	assimilation
[Ref.: #43810]	amygdalin ChEBI	+	builds acid from
[Ref.: #43810]	arbutin ChEBI	+	builds acid from
[Ref.: #43810]	casein	-	hydrolysis
[Ref.: #43810]	cellobiose ChEBI	+	builds acid from
[Ref.: #43810]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43810]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43810]	D-fructose ChEBI	+	builds acid from
[Ref.: #43810]	D-fucose ChEBI	-	builds acid from
[Ref.: #43810]	D-glucose ChEBI	-	assimilation
[Ref.: #43810]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43810]	D-mannitol ChEBI	-	assimilation
[Ref.: #43810]	D-mannose ChEBI	-	assimilation
[Ref.: #43810]	D-sorbitol ChEBI	-	builds acid from
[Ref.: #43810]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43810]	D-xylose ChEBI	+	builds acid from
[Ref.: #43810]	erythritol ChEBI	-	builds acid from
[Ref.: #43810]	esculin ChEBI	-	hydrolysis
[Ref.: #43810]	fructose ChEBI	+	builds acid from
[Ref.: #43810]	galactitol ChEBI	-	builds acid from
[Ref.: #43810]	galactose ChEBI	+	builds acid from
[Ref.: #43810]	gelatin ChEBI	-	hydrolysis
[Ref.: #43810]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43810]	gluconate ChEBI	-	builds acid from
[Ref.: #43810]	glycerol ChEBI	+	builds acid from
[Ref.: #43810]	glycogen ChEBI	+	builds acid from
[Ref.: #43810]	inulin ChEBI	-	builds acid from
[Ref.: #43810]	L-arabinose ChEBI	-	assimilation
[Ref.: #43810]	L-fucose ChEBI	-	builds acid from
[Ref.: #43810]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #43810]	L-sorbose ChEBI	-	builds acid from
[Ref.: #43810]	L-xylose ChEBI	-	builds acid from
[Ref.: #43810]	lactose ChEBI	+	builds acid from
[Ref.: #43810]	malate ChEBI	-	assimilation
[Ref.: #43810]	maltose hydrate	+	builds acid from
[Ref.: #43810]	melezitose ChEBI	+	builds acid from
[Ref.: #43810]	melibiose ChEBI	+	builds acid from
[Ref.: #43810]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #43810]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43810]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #43810]	methyl D-glucoside ChEBI	-	builds acid from
[Ref.: #43810]	myo-inositol ChEBI	-	builds acid from
[Ref.: #43810]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43810]	nitrate ChEBI	+	reduction
[Ref.: #43810]	phenylacetate ChEBI	-	assimilation
[Ref.: #43810]	potassium gluconate ChEBI	-	assimilation
[Ref.: #43810]	raffinose ChEBI	+	builds acid from
[Ref.: #43810]	rhamnose ChEBI	-	builds acid from
[Ref.: #43810]	ribose ChEBI	+	builds acid from
[Ref.: #43810]	salicin ChEBI	+	builds acid from
[Ref.: #43810]	sodium citrate ChEBI	-	assimilation
[Ref.: #43810]	starch ChEBI	+	hydrolysis
[Ref.: #43810]	trehalose ChEBI	+	builds acid from
[Ref.: #43810]	xylitol ChEBI	+/-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24186]	Sample type/isolated from	hydrocarbon contaminated soil from a pilot plant
[Ref.: #24186]	Geographic location (country and/or sea, region)	Granada
[Ref.: #24186]	Country	Spain
[Ref.: #24186]	Country ISO 3 Code	ESP
[Ref.: #24186]	Continent	Europe

[Ref.: #43810]	Sample type/isolated from	An artificial hydrocarbon-contaminated soil from a pilot plant
[Ref.: #43810]	Geographic location (country and/or sea, region)	Granada
[Ref.: #43810]	Country	Spain
[Ref.: #43810]	Country ISO 3 Code	ESP
[Ref.: #43810]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Industrial	#Plant (Factory)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KC625558 (>99% sequence identity) for Paenibacillus from Microbeatlas

Aquatic Samples	154
Soil Samples	669
Animal Samples	571
Plant Samples	57
Total Samples	1451

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24186]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24186]	Paenibacillus etheri strain SH7 16S ribosomal RNA gene, partial sequence	KC625558	1335	GenBank ENA	1306852 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Paenibacillus etheri SH7	GCA_001012825	scaffold	GenBank ENA	1306852 tax ID	*

[Ref.: #24186]

GC-content

44.3 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Paenibacillus etheri SH7 NCBI: GCA_001012825.2
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Paenibacillus etheri SH7 NCBI: GCA_001012825.2
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	65.854	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	91.898	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	61.672	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	92.203	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.445	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	84.661	no

Availability in culture collections External links

[Ref.: #24186]

Culture collection no.

DSM 29760, CECT 8558

[Ref.: #90739]

SI-ID 405677

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Paenibacillus albidus sp. nov., isolated from grassland soil.	Zhuang J, Xin D, Zhang YQ, Guo J, Zhang J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002356	2017	*
Cultivation	Toxicity and biofilm-based selection for methyl tert-butyl ether bioremediation technology.	Guisado IM, Purswani J, Caton-Alcubierre L, Gonzalez-Lopez J, Pozo C	Water Sci Technol	10.2166/wst.2016.461	2016	*
Phylogeny	Paenibacillus etheri sp. nov., able to grow on media supplemented with methyl tert-butyl ether (MTBE) and isolated from hydrocarbon-contaminated soil.	Guisado IM, Purswani J, Gonzalez-Lopez J, Pozo C	Int J Syst Evol Microbiol	10.1099/ijsem.0.000802	2015	*
Genetics	Draft Genome Sequence of Paenibacillus etheri sp. nov. SH7T, a Methyl Tert-Butyl Ether Degrader.	Purswani J, Guisado IM, Gonzalez-Lopez J, Pozo C	Genome Announc	10.1128/genomeA.01696-15	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24186

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29760

#43810

Isabel M. Guisado, Jessica Purswani, Jesús González-López, Clementina Pozo: Paenibacillus etheri sp. nov., able to grow on media supplemented with methyl tert-butyl ether (MTBE) and isolated from hydrocarbon-contaminated soil. IJSEM 66: 862 - 867 2016 ( DOI 10.1099/ijsem.0.000802 , PubMed 26611534 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90739

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405677.1 )

* These data were automatically processed and therefore are not curated

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