Name: Nitrospirillum iridis YC6995
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132394

Type strain:

Species: Nitrospirillum iridis

Strain Designation: YC6995

Culture col. no.: DSM 22198, KACC 13777

Strain history: <- Y. R. Chung, Gyeongsang Natl. Univ. (GNU), Jinju, Korea; YC6995 <- E. J. Chung

NCBI tax ID(s): 765888 (species)

SI-ID 397281

DSM 22198

Section

Nitrospirillum iridis YC6995 is a mesophilic, motile bacterium that was isolated from rhizosphere soil of Iris ensata var. spontanea Nakai from wetland.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Azospirillaceae*
	Genus	*Nitrospirillum*
	Species	**Nitrospirillum iridis**
	Full Scientific Name (LPSN)	Nitrospirillum iridis corrig. Chung et al. 2016

Synonym

Nitrospirillum irinus

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.948

[Ref.: #69480]	Motility	yes Confidence in %93.871

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24183]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24183]

Culture medium growth

[Ref.: #24183]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24183]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24183]			growth	30 °C

[Ref.: #24183]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.989

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24183]	Sample type/isolated from	rhizosphere soil of Iris ensata var. spontanea (Makino) Nakai from wetland
[Ref.: #24183]	Host species	Iris ensata var. spontanea
[Ref.: #24183]	Geographic location (country and/or sea, region)	Jiri mountain region (35° 81' 9'' N, 127° 87' 3'' E) at an altitude of 960 m
[Ref.: #24183]	Country	Republic of Korea
[Ref.: #24183]	Country ISO 3 Code	KOR
[Ref.: #24183]	Continent	Asia
[Ref.: #24183]	Geographic location	35.3370°/127.6880°
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence GU048666 (>99% sequence identity) for Nitrospirillum iridis subclade from Microbeatlas

Aquatic Samples	29
Soil Samples	26
Animal Samples	55
Plant Samples	3
Total Samples	113

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24183]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24183]	Nitrospirillum iridis strain YC6995 16S ribosomal RNA gene, partial sequence	GU048666	1471	ENA	765888 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Nitrospirillum iridis DSM 22198	GCA_014205765	scaffold	GenBank	765888 tax ID	*
[Ref.: #66792]	Nitrospirillum iridis strain DSM 22198	765888.3	wgs	PATRIC	765888 tax ID	*
[Ref.: #66792]	Nitrospirillum iridis DSM 22198	2828341930	draft	JGI IMG/M	765888 tax ID	*

[Ref.: #24183]

GC-content

64.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Nitrospirillum iridis DSM 22198 NCBI: GCA_014205765.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Nitrospirillum iridis DSM 22198 NCBI: GCA_014205765.1
[Ref.: #69480]	flagellated	yes	52.748	no
[Ref.: #69480]	gram-positive	no	98.287	no
[Ref.: #69480]	anaerobic	no	98.182	no
[Ref.: #69480]	aerobic	yes	77.418	no
[Ref.: #69480]	halophile	no	96.956	no
[Ref.: #69480]	spore-forming	no	87.281	no
[Ref.: #69480]	glucose-util	yes	92.799	no
[Ref.: #69480]	thermophile	no	98.823	yes
[Ref.: #69480]	motile	yes	83.587	no
[Ref.: #69480]	glucose-ferment	no	89.744	no

Availability in culture collections External links

[Ref.: #24183]

Culture collection no.

DSM 22198, KACC 13777

[Ref.: #90736]

SI-ID 397281

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nitrospirillum irinus sp. nov., a diazotrophic bacterium isolated from the rhizosphere soil of Iris and emended description of the genus Nitrospirillum.	Chung EJ, Park TS, Kim KH, Jeon CO, Lee HI, Chang WS, Aslam Z, Chung YR	Antonie Van Leeuwenhoek	10.1007/s10482-015-0528-x	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24183

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22198

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90736

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397281.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Nitrospirillum iridis in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Nitrospirillum iridis DSM 22198

Nitrospirillum iridis DSM 22198

Change proposal

Change proposal