Brevibacillus sediminis (DSM 29928, CPCC 100738, YIM 78300)

Name: Brevibacillus sediminis (DSM 29928, CPCC 100738, YIM 78300)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132383

Type strain

Culture col. no. DSM 29928 CPCC 100738 YIM 78300 JCM 30638

NCBI tax ID(s) 1707527

Special Collections DSMZ JCM Literature strains

History DSMZ <- W.-J. Li, YIM; YIM 78300 <- W. Xian JCM <-- W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 78300.

Links

Brevibacillus sediminis DSM 29928 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from hot spring sediment.

spore-forming Gram-positive motile rod-shaped colony-forming aerobe 16S sequence Bacteria

Name and taxonomic classification

SI-ID 400668

JCM 30638,DSM 29928

@ref 20215

Last LPSN update 2026-05-29 08:37:50

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Paenibacillaceae

Genus Brevibacillus

Species Brevibacillus sediminis

Full scientific name Brevibacillus sediminis Xian et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility	Flagellum arrangement
43777	positive	1.5-2.6 µm	0.5-0.7 µm	rod-shaped		peritrichous

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
43777	1-4 mm	Bluish white	circular	3 days	R2A agar

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
43777	Reasoner's 2A agar (R2A)		Yeast extract 0.5 g, peptone 0.5 g, Casamino acids 0.5 g, glucose 0.5 g, soluble starch 0.5 g, K2HPO4 0.3 g, MgSO4 0.05 g, sodium pyruvate 0.3 g, distilled water 1000 mL, agar 20 g, pH 7.2, following serial dilution and incubated at 60 °C for 7 days
43777	Reasoner's 2A agar (R2A)
24172	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24172	positive	growth	55
43777	positive	growth	37-65
43777	positive	optimum	50-55
67770	positive	growth	55

Culture pH

@ref	Ability	Type	PH
43777	positive	optimum	7
43777	positive	growth	6-8

Physiology and metabolism

Oxygen tolerance

43777

Oxygen toleranceaerobe

Spore formation

@ref	Spore description	Type of spore	Spore formation
43777	Ellipsoidal, located terminally within swollen sporangium	endospore

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43777	NaCl	positive	growth	0-1.5 %(w/v)

Observation

67770

Observationquinones: MK-7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43777	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43777	58143 ChEBI	5-dehydro-D-gluconate	+	builds acid from
43777	17925 ChEBI	alpha-D-glucose	-	respiration
43777	27613 ChEBI	amygdalin	-	builds acid from
43777	18305 ChEBI	arbutin	-	builds acid from
43777	161680 ChEBI	aztreonam	-	respiration
43777	17057 ChEBI	cellobiose	-	builds acid from
43777	62968 ChEBI	cellulose	-	hydrolysis
43777	15824 ChEBI	D-fructose	+	builds acid from
43777	78697 ChEBI	D-fructose 6-phosphate	+	respiration
43777	28847 ChEBI	D-fucose	-	respiration
43777	12936 ChEBI	D-galactose	+	respiration
43777	17634 ChEBI	D-glucose	-	builds acid from
43777	15748 ChEBI	D-glucuronate	+	respiration
43777	62318 ChEBI	D-lyxose	-	builds acid from
43777	16899 ChEBI	D-mannitol	-	respiration
43777	16024 ChEBI	D-mannose	-	builds acid from
43777	16988 ChEBI	D-ribose	+	builds acid from
43777	16443 ChEBI	D-tagatose	+	builds acid from
43777	65327 ChEBI	D-xylose	-	builds acid from
43777	4853 ChEBI	esculin	+	builds acid from
43777	32323 ChEBI	glucuronamide	+	respiration
43777	17754 ChEBI	glycerol	-	builds acid from
43777	28087 ChEBI	glycogen	+	builds acid from
43777	17596 ChEBI	inosine	-	respiration
43777	16977 ChEBI	L-alanine	-	respiration
43777	30849 ChEBI	L-arabinose	-	builds acid from
43777	18287 ChEBI	L-fucose	+	respiration
43777	62345 ChEBI	L-rhamnose	+	respiration
43777	17266 ChEBI	L-sorbose	+	builds acid from
43777	29864 ChEBI	mannitol	+	builds acid from
43777	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43777	100147 ChEBI	nalidixic acid	-	respiration
43777	17632 ChEBI	nitrate	-	reduction
43777	17309 ChEBI	pectin	-	respiration
43777	32032 ChEBI	potassium gluconate	-	builds acid from
43777	30911 ChEBI	sorbitol	-	builds acid from
43777	28017 ChEBI	starch	+/-	hydrolysis
43777	17992 ChEBI	sucrose	-	respiration
43777		synanthrin	-	builds acid from
43777	75193 ChEBI	tetrazolium violet	+	respiration
43777	27082 ChEBI	trehalose	-	respiration
43777	32528 ChEBI	turanose	-	respiration
43777	53424 ChEBI	tween 20	-	hydrolysis
43777	53423 ChEBI	tween 40	-	hydrolysis
43777	53425 ChEBI	tween 60	-	hydrolysis
43777	53426 ChEBI	tween 80	-	hydrolysis

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43777	16136 ChEBI	hydrogen sulfide

Enzymes

@ref	Value	Activity	Ec
43777	acid phosphatase	+	3.1.3.2
43777	alkaline phosphatase	+	3.1.3.1
43777	alpha-chymotrypsin	-	3.4.21.1
43777	alpha-galactosidase	-	3.2.1.22
43777	alpha-glucosidase	-	3.2.1.20
43777	alpha-mannosidase	-	3.2.1.24
43777	beta-D-fucosidase	-	3.2.1.38
43777	beta-galactosidase	-	3.2.1.23
43777	beta-glucosidase	-	3.2.1.21
43777	beta-glucuronidase	-	3.2.1.31
43777	catalase	+	1.11.1.6
43777	cystine arylamidase	+	3.4.11.3
43777	cytochrome oxidase	+	1.9.3.1
43777	esterase (C 4)	+
43777	esterase Lipase (C 8)	+
43777	leucine arylamidase	+	3.4.11.1
43777	lipase (C 14)	+
43777	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43777	naphthol-AS-BI-phosphohydrolase	+
43777	trypsin	+	3.4.21.4
43777	urease	+	3.5.1.5
43777	valine arylamidase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24172	hot spring sediment	western Tibet Province, Angren, Tagejia Geothermal Field	China	CHN	Asia
43777	The sediment of a hot spring in the Tagejia Geothermal Field	Angren, Tibet province	China	CHN	Asia
67770	Sediment of a hot spring in the Tagejia Geothermal Field	Angren, Tibet Province, western China	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24172	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24172	Brevibacillus sediminis strain YIM 78300 16S ribosomal RNA gene, partial sequence	KP985221	1527		1707527

GC content

@ref	GC-content (mol%)	Method
24172	57.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevibacillus sediminis sp. nov., isolated from a hot spring.	Xian WD, Yin YR, Liu L, Yuan CG, Hussain F, Khan I, Habib N, Zhou EM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000752	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24172	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29928
#43777	Wen-Dong Xian, Yi-Rui Yin, Lan Liu, Chang-Guo Yuan, Firasat Hussain, Inamullah Khan, Neeli Habib, En-Min Zhou, Wen-Jun Li: Brevibacillus sediminis sp. nov., isolated from a hot spring. IJSEM 66: 548 - 553 2016 ( DOI 10.1099/ijsem.0.000752 , PubMed 26556809 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Brevibacillus sediminis (DSM 29928, CPCC 100738, YIM 78300)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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