Name: Brevibacillus sediminis DSM 29928
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132383

Type strain:

Species: Brevibacillus sediminis

Culture col. no.: DSM 29928, CPCC 100738, YIM 78300, JCM 30638

Strain history: W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM 78300.

NCBI tax ID(s): 1707527 (species)

SI-ID 400668

DSM 29928

Section

Brevibacillus sediminis DSM 29928 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from hot spring sediment.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Paenibacillaceae*
	Genus	*Brevibacillus*
	Species	**Brevibacillus sediminis**
	Full Scientific Name (LPSN)	Brevibacillus sediminis Xian et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43777]	Gram stain	positive

[Ref.: #43777]	Cell length	1.5-2.6 µm

[Ref.: #43777]	Cell width	0.5-0.7 µm

[Ref.: #43777]	Cell shape	rod-shaped

[Ref.: #43777]	Motility	yes

[Ref.: #43777]	Flagellum arrangement	peritrichous

[Ref.: #43777]	Colony size	1-4 mm
[Ref.: #43777]	Colony color	Bluish white
[Ref.: #43777]	Colony shape	circular
[Ref.: #43777]	Incubation period	3 days
[Ref.: #43777]	Cultivation medium used	R2A agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43777]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43777]

Culture medium growth

[Ref.: #43777]

Culture medium composition

expand / minimize

[Ref.: #43777]

Culture medium

Reasoner's 2A agar (R2A)

[Ref.: #43777]

Culture medium growth

[Ref.: #24172]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24172]

Culture medium growth

[Ref.: #24172]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24172]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24172]	growth	55 °C
[Ref.: #43777]	growth	37-65 °C
[Ref.: #43777]	optimum	50-55 °C
[Ref.: #67770]	growth	55 °C

[Ref.: #24172]	Temperature range	thermophilic
[Ref.: #43777]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

	pH	Kind of pH		pH
[Ref.: #43777]			optimum	7
[Ref.: #43777]			growth	6-8

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43777]

Oxygen tolerance

aerobe

[Ref.: #43777]	Spore description	Ellipsoidal, located terminally within swollen sporangium
[Ref.: #43777]	Type of spore	endospore
[Ref.: #43777]	Ability of spore formation	yes

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43777]		NaCl		growth	0-1.5	%(w/v)

[Ref.: #67770]

Observation

quinones: MK-7

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43777]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43777]	5-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #43777]	alpha-D-glucose ChEBI	-	respiration
[Ref.: #43777]	amygdalin ChEBI	-	builds acid from
[Ref.: #43777]	arbutin ChEBI	-	builds acid from
[Ref.: #43777]	aztreonam ChEBI	-	respiration
[Ref.: #43777]	cellobiose ChEBI	-	builds acid from
[Ref.: #43777]	cellulose ChEBI	-	hydrolysis
[Ref.: #43777]	D-fructose ChEBI	+	builds acid from
[Ref.: #43777]	D-fructose 6-phosphate ChEBI	+	respiration
[Ref.: #43777]	D-fucose ChEBI	-	respiration
[Ref.: #43777]	D-galactose ChEBI	+	respiration
[Ref.: #43777]	D-glucose ChEBI	-	builds acid from
[Ref.: #43777]	D-glucuronate ChEBI	+	respiration
[Ref.: #43777]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43777]	D-mannitol ChEBI	-	respiration
[Ref.: #43777]	D-mannose ChEBI	-	builds acid from
[Ref.: #43777]	D-ribose ChEBI	+	builds acid from
[Ref.: #43777]	D-tagatose ChEBI	+	builds acid from
[Ref.: #43777]	D-xylose ChEBI	-	builds acid from
[Ref.: #43777]	esculin ChEBI	+	builds acid from
[Ref.: #43777]	glucuronamide ChEBI	+	respiration
[Ref.: #43777]	glycerol ChEBI	-	builds acid from
[Ref.: #43777]	glycogen ChEBI	+	builds acid from
[Ref.: #43777]	inosine ChEBI	-	respiration
[Ref.: #43777]	L-alanine ChEBI	-	respiration
[Ref.: #43777]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43777]	L-fucose ChEBI	+	respiration
[Ref.: #43777]	L-rhamnose ChEBI	+	respiration
[Ref.: #43777]	L-sorbose ChEBI	+	builds acid from
[Ref.: #43777]	mannitol ChEBI	+	builds acid from
[Ref.: #43777]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43777]	nalidixic acid ChEBI	-	respiration
[Ref.: #43777]	nitrate ChEBI	-	reduction
[Ref.: #43777]	pectin ChEBI	-	respiration
[Ref.: #43777]	potassium gluconate ChEBI	-	builds acid from
[Ref.: #43777]	sorbitol ChEBI	-	builds acid from
[Ref.: #43777]	starch ChEBI	+/-	hydrolysis
[Ref.: #43777]	sucrose ChEBI	-	respiration
[Ref.: #43777]	synanthrin	-	builds acid from
[Ref.: #43777]	tetrazolium violet ChEBI	+	respiration
[Ref.: #43777]	trehalose ChEBI	-	respiration
[Ref.: #43777]	turanose ChEBI	-	respiration
[Ref.: #43777]	tween 20 ChEBI	-	hydrolysis
[Ref.: #43777]	tween 40 ChEBI	-	hydrolysis
[Ref.: #43777]	tween 60 ChEBI	-	hydrolysis
[Ref.: #43777]	tween 80 ChEBI	-	hydrolysis
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43777]		hydrogen sulfide ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43777]	acid phosphatase	+	3.1.3.2
[Ref.: #43777]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43777]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43777]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43777]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43777]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43777]	beta-D-fucosidase	-	3.2.1.38
[Ref.: #43777]	beta-galactosidase	-	3.2.1.23
[Ref.: #43777]	beta-glucosidase	-	3.2.1.21
[Ref.: #43777]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43777]	catalase	+	1.11.1.6
[Ref.: #43777]	cystine arylamidase	+	3.4.11.3
[Ref.: #43777]	cytochrome oxidase	+	1.9.3.1
[Ref.: #43777]	esterase (C 4)	+
[Ref.: #43777]	esterase Lipase (C 8)	+
[Ref.: #43777]	leucine arylamidase	+	3.4.11.1
[Ref.: #43777]	lipase (C 14)	+
[Ref.: #43777]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43777]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43777]	trypsin	+	3.4.21.4
[Ref.: #43777]	urease	+	3.5.1.5
[Ref.: #43777]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24172]	Sample type/isolated from	hot spring sediment
[Ref.: #24172]	Geographic location (country and/or sea, region)	western Tibet Province, Angren, Tagejia Geothermal Field
[Ref.: #24172]	Country	China
[Ref.: #24172]	Country ISO 3 Code	CHN
[Ref.: #24172]	Continent	Asia

[Ref.: #43777]	Sample type/isolated from	The sediment of a hot spring in the Tagejia Geothermal Field
[Ref.: #43777]	Geographic location (country and/or sea, region)	Angren, Tibet province
[Ref.: #43777]	Country	China
[Ref.: #43777]	Country ISO 3 Code	CHN
[Ref.: #43777]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sediment of a hot spring in the Tagejia Geothermal Field
[Ref.: #67770]	Geographic location (country and/or sea, region)	Angren, Tibet Province, western China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Condition	#Thermophilic (>45°C)	-
#Environmental	#Aquatic	#Sediment
#Environmental	#Aquatic	#Thermal spring

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24172]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24172]	Brevibacillus sediminis strain YIM 78300 16S ribosomal RNA gene, partial sequence	KP985221	1527	ENA	1707527 tax ID

[Ref.: #24172]

GC-content

57.9 mol%

high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24172]

Culture collection no.

DSM 29928, CPCC 100738, YIM 78300, JCM 30638

[Ref.: #90726]

SI-ID 400668

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Brevibacillus sediminis sp. nov., isolated from a hot spring.	Xian WD, Yin YR, Liu L, Yuan CG, Hussain F, Khan I, Habib N, Zhou EM, Li WJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000752	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24172

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29928

#43777

Wen-Dong Xian, Yi-Rui Yin, Lan Liu, Chang-Guo Yuan, Firasat Hussain, Inamullah Khan, Neeli Habib, En-Min Zhou, Wen-Jun Li: Brevibacillus sediminis sp. nov., isolated from a hot spring. IJSEM 66: 548 - 553 2016 ( DOI 10.1099/ijsem.0.000752 , PubMed 26556809 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#90726

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID400668.1 )

* These data were automatically processed and therefore are not curated

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