Parviterribacter kavangonensis (DSM 25205, LMG 26950, D16/0/H6)

Name: Parviterribacter kavangonensis (DSM 25205, LMG 26950, D16/0/H6)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132374

Type strain

Strain Designation D16/0/H6

Culture col. no. DSM 25205 LMG 26950 D16/0/H6

NCBI tax ID(s) 1640865

Special Collections DSMZ Literature strains

Links

Parviterribacter kavangonensis D16/0/H6 is an obligate aerobe, chemoorganotroph, Gram-positive prokaryote that forms circular colonies and was isolated from loamy subtropical savannah soil.

Gram-positive motile pleomorphic-shaped colony-forming obligate aerobe chemoorganotroph 16S sequence

Name and taxonomic classification

SI-ID 397550

LMG 26950,DSM 25205

@ref 20215

Last LPSN update 2025-12-16 10:01:30

Domain Bacillati

Phylum Actinomycetota

Class Thermoleophilia

Order Solirubrobacterales

Family Parviterribacteraceae

Genus Parviterribacter

Species Parviterribacter kavangonensis

Full scientific name Parviterribacter kavangonensis Foesel et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43815	positive	1-1.5 µm	0.6-0.7 µm	pleomorphic-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43815	0.1 mm	Light pink	circular	Agar-solidified SSE/HD 1 : 10 medium

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43815	Agar-solidified SSE/HD 1 : 10 medium
24163	SSE/HD1:10 (DSMZ Medium 1426)		Medium recipe at MediaDive	Name: SSE/HD 1:10 MEDIUM (DSMZ Medium 1426) Composition: MES 1.95 g/l Peptone 0.5 g/l CaSO4 x 2 H2O 0.4303 g/l MgSO4 x 7 H2O 0.3695 g/l Yeast extract 0.25 g/l Na NO3 0.212 g/l CaCl2 x 2 H2O 0.1469 g/l Ca(NO3)2 x 4 H2O 0.118 g/l MgCl2 x 6 H2O 0.1018 g/l Glucose 0.1 g/l (NH4)2SO4 0.09915 g/l NH4Cl 0.05345 g/l K2SO4 0.0435 g/l FeSO4 x 7 H2O 0.00555 g/l KH2PO4 0.00340213 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l Lipoic acid 5e-06 g/l D-Calcium pantothenate 5e-06 g/l Nicotinic acid 5e-06 g/l Riboflavin 5e-06 g/l Thiamine-HCl x 2 H2O 5e-06 g/l p-Aminobenzoic acid 5e-06 g/l Folic acid 2e-06 g/l Biotin 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24163	positive	growth	28	mesophilic
43815	positive	growth	13-43
43815	positive	optimum	35-43

Culture pH

@ref	Ability	Type	PH	PH range
43815	positive	optimum	5-8
43815	positive	growth	4.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

43815

Oxygen toleranceobligate aerobe

Nutrition type

43815

Typechemoorganotroph

Spore formation

43815

Spore formationno

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43815		NaCl	positive	growth	0-0.5 %(w/v)
43815	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Observation

43815

ObservationCapsule forming

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43815	52682 ChEBI	1,2-butandiol	-	growth
43815	16997 ChEBI	1,2-propandiol	-	growth
43815	62064 ChEBI	2,3-butanediol	-	growth
43815	64552 ChEBI	2-hydroxybutyrate	-	growth
43815		2-oxogluconate	-	growth
43815	30916 ChEBI	2-oxoglutarate	-	growth
43815	28644 ChEBI	2-oxopentanoate	-	growth
43815	16724 ChEBI	4-hydroxybutyrate	-	growth
43815	39150 ChEBI	4-oxopentanoate	-	growth
43815	30089 ChEBI	acetate	+	growth
43815	15688 ChEBI	acetoin	-	growth
43815	17128 ChEBI	adipate	-	growth
43815	16449 ChEBI	alanine	-	growth
43815	22605 ChEBI	arabinitol	-	growth
43815	22605 ChEBI	arabinitol	+	growth
43815	22599 ChEBI	arabinose	-	growth
43815	29016 ChEBI	arginine	-	growth
43815	22651 ChEBI	ascorbate	-	growth
43815	35391 ChEBI	aspartate	+	growth
43815	16150 ChEBI	benzoate	-	growth
43815	8295 ChEBI	beta-hydroxybutyrate	+	growth
43815	28885 ChEBI	butanol	-	growth
43815	17968 ChEBI	butyrate	+	growth
43815		casamino acids	+	growth
43815		casein hydrolysate	+	growth
43815	17057 ChEBI	cellobiose	-	growth
43815	62968 ChEBI	cellulose	-	growth
43815	17029 ChEBI	chitin	-	growth
43815	16947 ChEBI	citrate	-	growth
43815	35899 ChEBI	crotonate	-	growth
43815	15356 ChEBI	cysteine	-	growth
43815	27689 ChEBI	decanoate	-	growth
43815	15379 ChEBI	dioxygen	+	electron acceptor
43815	33946 ChEBI	erythrose	-	growth
43815	23958 ChEBI	erythrulose	-	growth
43815	4853 ChEBI	esculin	+	hydrolysis
43815	16236 ChEBI	ethanol	-	growth
43815	30742 ChEBI	ethylene glycol	-	growth
43815		fermented rumen extract	-	growth
43815	15740 ChEBI	formate	-	growth
43815	28757 ChEBI	fructose	-	growth
43815	33984 ChEBI	fucose	-	growth
43815	29806 ChEBI	fumarate	-	growth
43815	16813 ChEBI	galactitol	-	growth
43815	28260 ChEBI	galactose	-	growth
43815	5291 ChEBI	gelatin	+	hydrolysis
43815	24265 ChEBI	gluconate	-	growth
43815	5417 ChEBI	glucosamine	-	growth
43815	17234 ChEBI	glucose	+	growth
43815	24297 ChEBI	glucuronate	-	growth
43815	29987 ChEBI	glutamate	-	growth
43815	17754 ChEBI	glycerol	-	growth
43815	15428 ChEBI	glycine	-	growth
43815	29805 ChEBI	glycolate	-	growth
43815	36655 ChEBI	glyoxylate	-	growth
43815	32362 ChEBI	heptanoate	-	growth
43815	27570 ChEBI	histidine	-	growth
43815	24741 ChEBI	hydroxyproline	+	growth
43815	48944 ChEBI	isobutyrate	-	growth
43815	16087 ChEBI	isocitrate	-	growth
43815	24898 ChEBI	isoleucine	-	growth
43815	48942 ChEBI	isovalerate	-	growth
43815	24996 ChEBI	lactate	-	growth
43815	17716 ChEBI	lactose	-	growth
43815	6364 ChEBI	laminarin	-	growth
43815	25017 ChEBI	leucine	-	growth
43815	25094 ChEBI	lysine	+	growth
43815	25097 ChEBI	lyxose	-	growth
43815	25115 ChEBI	malate	-	growth
43815	15792 ChEBI	malonate	-	growth
43815	17306 ChEBI	maltose	-	growth
43815	29864 ChEBI	mannitol	-	growth
43815	37684 ChEBI	mannose	+	growth
43815	6731 ChEBI	melezitose	-	growth
43815	17790 ChEBI	methanol	-	growth
43815	16811 ChEBI	methionine	-	growth
43815	17268 ChEBI	myo-inositol	-	growth
43815	28037 ChEBI	N-acetylgalactosamine	-	growth
43815	506227 ChEBI	N-acetylglucosamine	-	growth
43815	32544 ChEBI	nicotinate	-	growth
43815	25646 ChEBI	octanoate	-	growth
43815	18257 ChEBI	ornithine	-	growth
43815	16452 ChEBI	oxaloacetate	-	growth
43815		peptone	+	growth
43815	28044 ChEBI	phenylalanine	-	growth
43815	26271 ChEBI	proline	-	growth
43815	28831 ChEBI	propanol	-	growth
43815	17272 ChEBI	propionate	+	growth
43815	36241 ChEBI	protocatechuate	+	growth
43815	15361 ChEBI	pyruvate	+	growth
43815	16634 ChEBI	raffinose	-	growth
43815	26546 ChEBI	rhamnose	-	growth
43815	15963 ChEBI	ribitol	-	growth
43815	36208 ChEBI	shikimate	-	growth
43815	30911 ChEBI	sorbitol	-	growth
43815	27922 ChEBI	sorbose	-	growth
43815	28017 ChEBI	starch	-	growth
43815	30031 ChEBI	succinate	+	growth
43815	17992 ChEBI	sucrose	-	growth
43815	30929 ChEBI	tartrate	-	growth
43815	26986 ChEBI	threonine	-	growth
43815	27082 ChEBI	trehalose	-	growth
43815		trimethoxybenzoate	-	growth
43815	27897 ChEBI	tryptophan	-	growth
43815	53426 ChEBI	tween 80	-	growth
43815	18186 ChEBI	tyrosine	-	growth
43815	27266 ChEBI	valine	-	growth
43815	17151 ChEBI	xylitol	-	growth
43815	18222 ChEBI	xylose	-	growth
43815		yeast extract	+	growth

Metabolite production

@ref	Chebi-ID	Metabolite	Production
43815	15688 ChEBI	acetoin
43815	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
43815	acid phosphatase	+	3.1.3.2
43815	alkaline phosphatase	+	3.1.3.1
43815	alpha-chymotrypsin	-	3.4.21.1
43815	alpha-fucosidase	+/-	3.2.1.51
43815	alpha-galactosidase	-	3.2.1.22
43815	alpha-glucosidase	-	3.2.1.20
43815	alpha-mannosidase	+	3.2.1.24
43815	arginine dihydrolase	-	3.5.3.6
43815	beta-galactosidase	-	3.2.1.23
43815	beta-glucosidase	-	3.2.1.21
43815	beta-glucuronidase	+	3.2.1.31
43815	catalase	+	1.11.1.6
43815	cystine arylamidase	+/-	3.4.11.3
43815	cytochrome oxidase	+/-	1.9.3.1
43815	esterase (C 4)	+
43815	esterase Lipase (C 8)	+
43815	leucine arylamidase	+	3.4.11.1
43815	lipase (C 14)	-
43815	N-acetyl-beta-glucosaminidase	-	3.2.1.52
43815	naphthol-AS-BI-phosphohydrolase	+
43815	trypsin	-	3.4.21.4
43815	urease	-	3.5.1.5
43815	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

43815

Fatty acid	Percentage
10-methyl C17:0	35.97
C16:0 iso	21.58
C18:1ω9c	9.99
C17:1ω8c	3.89
C16:1ω7c / C15:0 iso 2OH	3.86
C17:0 anteiso	3.7
C18:0 iso	3.47
C17:1ω6c	2.86
C19:1ω9c / C19:1ω11c	2.46
C17:0 iso	1.66
C17:1 iso ω9c	1.65
10-methyl C18:0	1.29
C14:0 iso	1.21
C16:1 iso H	1.07
10-methyl C19:0	0.84
iso-C18:1H	0.65
C15:0 3OH	0.49
C17:1 iso I / C17:1 anteiso B	0.49
C16:0	0.47
C15:0 iso	0.38
C20:0 iso	0.36
C15:0	0.33
C15:0 anteiso	0.31
C18:3ω6,9,12c	0.27
C19:0ω10c-cyclo / C19:1ω6c	0.26
C15:1ω6c	0.25
C14:0	0.25

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Climate	#Hot	#Tropical
#Climate	#Temperate	#Subtropical
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Isolation date
24163	loamy subtropical savannah soil	Kavango, Mile46/Mutompo (18° 17' 14.0'' S 19° 15' 32.3'' E)	Namibia	NAM	Africa	-18.2872	19.259 -18.2872/19.259
43815	Loamy subtropical savannah soil at Mile 46	Mile 46, Kavango region	Namibia	NAM	Africa	-18.287	19.258 -18.287/19.258	2008

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24163	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24163	Parviterribacter kavangonensis strain D16/0/H6 16S ribosomal RNA gene, partial sequence	KP981370	1456		1640865

GC content

@ref	GC-content (mol%)	Method
43815	72.8	high performance liquid chromatography (HPLC)
24163	72.8

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families.	Foesel BU, Geppert A, Rohde M, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000770	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24163	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25205
#43815	Bärbel U. Foesel, Alicia Geppert, Manfred Rohde, Jörg Overmann: Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families. IJSEM 66: 652 - 655 2016 ( DOI 10.1099/ijsem.0.000770 , PubMed 26582010 )
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Parviterribacter kavangonensis (DSM 25205, LMG 26950, D16/0/H6)

Name and taxonomic classification