Name: Parviterribacter kavangonensis D16/0/H6
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132374

Type strain:

Species: Parviterribacter kavangonensis

Strain Designation: D16/0/H6

Culture col. no.: DSM 25205, LMG 26950

Strain history: <- B. Fösel, DSMZ GmbH, Braunschweig, Germany; D16_0_H6

NCBI tax ID(s): 1640865 (species)

SI-ID 397550

DSM 25205

Section

Parviterribacter kavangonensis D16/0/H6 is an obligate aerobe, chemoorganotroph, Gram-positive bacterium that forms circular colonies and was isolated from loamy subtropical savannah soil.

colony-forming
Gram-positive
motile
pleomorphic-shaped
chemoorganotroph
obligate aerobe
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Thermoleophilia*
	Order	*Solirubrobacterales*
	Family	*Parviterribacteraceae*
	Genus	*Parviterribacter*
	Species	**Parviterribacter kavangonensis**
	Full Scientific Name (LPSN)	Parviterribacter kavangonensis Foesel et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43815]	Gram stain	positive

[Ref.: #43815]	Cell length	1-1.5 µm

[Ref.: #43815]	Cell width	0.6-0.7 µm

[Ref.: #43815]	Cell shape	pleomorphic-shaped

[Ref.: #43815]	Motility	yes

[Ref.: #43815]	Colony size	0.1 mm
[Ref.: #43815]	Colony color	Light pink
[Ref.: #43815]	Colony shape	circular
[Ref.: #43815]	Cultivation medium used	Agar-solidified SSE/HD 1 : 10 medium

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43815]

Culture medium

Agar-solidified SSE/HD 1 : 10 medium

[Ref.: #43815]

Culture medium growth

[Ref.: #24163]

Culture medium

SSE/HD1:10 (DSMZ Medium 1426)

[Ref.: #24163]

Culture medium growth

[Ref.: #24163]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24163]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24163]	growth	28 °C
[Ref.: #43815]	growth	13-43 °C
[Ref.: #43815]	optimum	35-43 °C

[Ref.: #24163]

Temperature range

mesophilic

	pH	Kind of pH		pH
[Ref.: #43815]			optimum	5-8
[Ref.: #43815]			growth	4.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43815]

Oxygen tolerance

obligate aerobe

[Ref.: #43815]

Nutrition type

chemoorganotroph

[Ref.: #43815]

Ability of spore formation

[Ref.: #43815]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43815]		NaCl		growth	0-0.5	%(w/v)
[Ref.: #43815]		NaCl		optimum	0	%(w/v)

[Ref.: #43815]

Observation

Capsule forming

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43815]	1,2-butandiol ChEBI	-	growth
[Ref.: #43815]	1,2-propandiol ChEBI	-	growth
[Ref.: #43815]	2,3-butanediol ChEBI	-	growth
[Ref.: #43815]	2-hydroxybutyrate ChEBI	-	growth
[Ref.: #43815]	2-oxogluconate	-	growth
[Ref.: #43815]	2-oxoglutarate ChEBI	-	growth
[Ref.: #43815]	2-oxopentanoate ChEBI	-	growth
[Ref.: #43815]	4-hydroxybutyrate ChEBI	-	growth
[Ref.: #43815]	4-oxopentanoate ChEBI	-	growth
[Ref.: #43815]	acetate ChEBI	+	growth
[Ref.: #43815]	acetoin ChEBI	-	growth
[Ref.: #43815]	adipate ChEBI	-	growth
[Ref.: #43815]	alanine ChEBI	-	growth
[Ref.: #43815]	arabinitol ChEBI	-	growth
[Ref.: #43815]	arabinitol ChEBI	+	growth
[Ref.: #43815]	arabinose ChEBI	-	growth
[Ref.: #43815]	arginine ChEBI	-	growth
[Ref.: #43815]	ascorbate ChEBI	-	growth
[Ref.: #43815]	aspartate ChEBI	+	growth
[Ref.: #43815]	benzoate ChEBI	-	growth
[Ref.: #43815]	beta-hydroxybutyrate ChEBI	+	growth
[Ref.: #43815]	butanol ChEBI	-	growth
[Ref.: #43815]	butyrate ChEBI	+	growth
[Ref.: #43815]	casamino acids	+	growth
[Ref.: #43815]	casein hydrolysate	+	growth
[Ref.: #43815]	cellobiose ChEBI	-	growth
[Ref.: #43815]	cellulose ChEBI	-	growth
[Ref.: #43815]	chitin ChEBI	-	growth
[Ref.: #43815]	citrate ChEBI	-	growth
[Ref.: #43815]	crotonate ChEBI	-	growth
[Ref.: #43815]	cysteine ChEBI	-	growth
[Ref.: #43815]	decanoate ChEBI	-	growth
[Ref.: #43815]	dioxygen ChEBI	+	electron acceptor
[Ref.: #43815]	erythrose ChEBI	-	growth
[Ref.: #43815]	erythrulose ChEBI	-	growth
[Ref.: #43815]	esculin ChEBI	+	hydrolysis
[Ref.: #43815]	ethanol ChEBI	-	growth
[Ref.: #43815]	ethylene glycol ChEBI	-	growth
[Ref.: #43815]	fermented rumen extract	-	growth
[Ref.: #43815]	formate ChEBI	-	growth
[Ref.: #43815]	fructose ChEBI	-	growth
[Ref.: #43815]	fucose ChEBI	-	growth
[Ref.: #43815]	fumarate ChEBI	-	growth
[Ref.: #43815]	galactitol ChEBI	-	growth
[Ref.: #43815]	galactose ChEBI	-	growth
[Ref.: #43815]	gelatin ChEBI	+	hydrolysis
[Ref.: #43815]	gluconate ChEBI	-	growth
[Ref.: #43815]	glucosamine ChEBI	-	growth
[Ref.: #43815]	glucose ChEBI	+	growth
[Ref.: #43815]	glucuronate ChEBI	-	growth
[Ref.: #43815]	glutamate ChEBI	-	growth
[Ref.: #43815]	glycerol ChEBI	-	growth
[Ref.: #43815]	glycine ChEBI	-	growth
[Ref.: #43815]	glycolate ChEBI	-	growth
[Ref.: #43815]	glyoxylate ChEBI	-	growth
[Ref.: #43815]	heptanoate ChEBI	-	growth
[Ref.: #43815]	histidine ChEBI	-	growth
[Ref.: #43815]	hydroxyproline ChEBI	+	growth
[Ref.: #43815]	isobutyrate ChEBI	-	growth
[Ref.: #43815]	isocitrate ChEBI	-	growth
[Ref.: #43815]	isoleucine ChEBI	-	growth
[Ref.: #43815]	isovalerate ChEBI	-	growth
[Ref.: #43815]	lactate ChEBI	-	growth
[Ref.: #43815]	lactose ChEBI	-	growth
[Ref.: #43815]	laminarin ChEBI	-	growth
[Ref.: #43815]	leucine ChEBI	-	growth
[Ref.: #43815]	lysine ChEBI	+	growth
[Ref.: #43815]	lyxose ChEBI	-	growth
[Ref.: #43815]	malate ChEBI	-	growth
[Ref.: #43815]	malonate ChEBI	-	growth
[Ref.: #43815]	maltose ChEBI	-	growth
[Ref.: #43815]	mannitol ChEBI	-	growth
[Ref.: #43815]	mannose ChEBI	+	growth
[Ref.: #43815]	melezitose ChEBI	-	growth
[Ref.: #43815]	methanol ChEBI	-	growth
[Ref.: #43815]	methionine ChEBI	-	growth
[Ref.: #43815]	myo-inositol ChEBI	-	growth
[Ref.: #43815]	N-acetylgalactosamine ChEBI	-	growth
[Ref.: #43815]	N-acetylglucosamine ChEBI	-	growth
[Ref.: #43815]	nicotinate ChEBI	-	growth
[Ref.: #43815]	octanoate ChEBI	-	growth
[Ref.: #43815]	ornithine ChEBI	-	growth
[Ref.: #43815]	oxaloacetate ChEBI	-	growth
[Ref.: #43815]	peptone	+	growth
[Ref.: #43815]	phenylalanine ChEBI	-	growth
[Ref.: #43815]	proline ChEBI	-	growth
[Ref.: #43815]	propanol ChEBI	-	growth
[Ref.: #43815]	propionate ChEBI	+	growth
[Ref.: #43815]	protocatechuate ChEBI	+	growth
[Ref.: #43815]	pyruvate ChEBI	+	growth
[Ref.: #43815]	raffinose ChEBI	-	growth
[Ref.: #43815]	rhamnose ChEBI	-	growth
[Ref.: #43815]	ribitol ChEBI	-	growth
[Ref.: #43815]	shikimate ChEBI	-	growth
[Ref.: #43815]	sorbitol ChEBI	-	growth
[Ref.: #43815]	sorbose ChEBI	-	growth
[Ref.: #43815]	starch ChEBI	-	growth
[Ref.: #43815]	succinate ChEBI	+	growth
[Ref.: #43815]	sucrose ChEBI	-	growth
[Ref.: #43815]	tartrate ChEBI	-	growth
[Ref.: #43815]	threonine ChEBI	-	growth
[Ref.: #43815]	trehalose ChEBI	-	growth
[Ref.: #43815]	trimethoxybenzoate	-	growth
[Ref.: #43815]	tryptophan ChEBI	-	growth
[Ref.: #43815]	tween 80 ChEBI	-	growth
[Ref.: #43815]	tyrosine ChEBI	-	growth
[Ref.: #43815]	valine ChEBI	-	growth
[Ref.: #43815]	xylitol ChEBI	-	growth
[Ref.: #43815]	xylose ChEBI	-	growth
[Ref.: #43815]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43815]		acetoin ChEBI	no
[Ref.: #43815]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43815]	acid phosphatase	+	3.1.3.2
[Ref.: #43815]	alkaline phosphatase	+	3.1.3.1
[Ref.: #43815]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43815]	alpha-fucosidase	+/-	3.2.1.51
[Ref.: #43815]	alpha-galactosidase	-	3.2.1.22
[Ref.: #43815]	alpha-glucosidase	-	3.2.1.20
[Ref.: #43815]	alpha-mannosidase	+	3.2.1.24
[Ref.: #43815]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43815]	beta-galactosidase	-	3.2.1.23
[Ref.: #43815]	beta-glucosidase	-	3.2.1.21
[Ref.: #43815]	beta-glucuronidase	+	3.2.1.31
[Ref.: #43815]	catalase	+	1.11.1.6
[Ref.: #43815]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #43815]	cytochrome oxidase	+/-	1.9.3.1
[Ref.: #43815]	esterase (C 4)	+
[Ref.: #43815]	esterase Lipase (C 8)	+
[Ref.: #43815]	leucine arylamidase	+	3.4.11.1
[Ref.: #43815]	lipase (C 14)	-
[Ref.: #43815]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43815]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #43815]	trypsin	-	3.4.21.4
[Ref.: #43815]	urease	-	3.5.1.5
[Ref.: #43815]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #43815]

Fatty acid	Percentage
10-methyl C17:0	35.97
C16:0 iso	21.58
C18:1ω9c	9.99
C17:1ω8c	3.89
C16:1ω7c / C15:0 iso 2OH	3.86
C17:0 anteiso	3.7
C18:0 iso	3.47
C17:1ω6c	2.86
C19:1ω9c / C19:1ω11c	2.46
C17:0 iso	1.66
C17:1 iso ω9c	1.65
10-methyl C18:0	1.29
C14:0 iso	1.21
C16:1 iso H	1.07
10-methyl C19:0	0.84
iso-C18:1H	0.65
C15:0 3OH	0.49
C17:1 iso I / C17:1 anteiso B	0.49
C16:0	0.47
C15:0 iso	0.38
C20:0 iso	0.36
C15:0	0.33
C15:0 anteiso	0.31
C18:3ω6,9,12c	0.27
C19:0ω10c-cyclo / C19:1ω6c	0.26
C15:1ω6c	0.25
C14:0	0.25

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24163]	Sample type/isolated from	loamy subtropical savannah soil
[Ref.: #24163]	Geographic location (country and/or sea, region)	Kavango, Mile46/Mutompo (18° 17' 14.0'' S 19° 15' 32.3'' E)
[Ref.: #24163]	Country	Namibia
[Ref.: #24163]	Country ISO 3 Code	NAM
[Ref.: #24163]	Continent	Africa
[Ref.: #24163]	Geographic location	-18.2872°/19.2590°

[Ref.: #43815]	Sample type/isolated from	Loamy subtropical savannah soil at Mile 46
[Ref.: #43815]	Geographic location (country and/or sea, region)	Mile 46, Kavango region
[Ref.: #43815]	Country	Namibia
[Ref.: #43815]	Country ISO 3 Code	NAM
[Ref.: #43815]	Continent	Africa
[Ref.: #43815]	Geographic location	-18.2870°/19.2580°
[Ref.: #43815]	Isolation date	2008
* marker position based on {}

Isolation sources categories

#Climate	#Hot	#Tropical
#Climate	#Temperate	#Subtropical
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24163]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24163]	Parviterribacter kavangonensis strain D16/0/H6 16S ribosomal RNA gene, partial sequence	KP981370	1456	ENA	1640865 tax ID

[Ref.: #43815]	GC-content	72.8 mol%	high performance liquid chromatography (HPLC)
[Ref.: #24163]	GC-content	72.8 mol%

Availability in culture collections External links

[Ref.: #24163]

Culture collection no.

DSM 25205, LMG 26950

[Ref.: #90718]

SI-ID 397550

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families.	Foesel BU, Geppert A, Rohde M, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000770	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24163

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25205

#43815

Bärbel U. Foesel, Alicia Geppert, Manfred Rohde, Jörg Overmann: Parviterribacter kavangonensis gen. nov., sp. nov. and Parviterribacter multiflagellatus sp. nov., novel members of Parviterribacteraceae fam. nov. within the order Solirubrobacterales, and emended descriptions of the classes Thermoleophilia and Rubrobacteria and their orders and families. IJSEM 66: 652 - 655 2016 ( DOI 10.1099/ijsem.0.000770 , PubMed 26582010 )

#90718

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397550.1 )

* These data were automatically processed and therefore are not curated

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