Bacillus gobiensis (DSM 29500, CGMCC 1.12902, FJAT-4402)

Name: Bacillus gobiensis (DSM 29500, CGMCC 1.12902, FJAT-4402)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132364

Type strain

Strain Designation FJAT-4402

Culture col. no. DSM 29500 CGMCC 1.12902 FJAT-4402

NCBI tax ID(s) 1441095

Special Collections DSMZ Literature strains

History <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-4402

Links

Bacillus gobiensis FJAT-4402 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from weed rhizosphere soil.

spore-forming Gram-positive motile rod-shaped colony-forming aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 398886

DSM 29500

@ref 20215

Last LPSN update 2026-02-09 11:31:41

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Bacillus

Species Bacillus gobiensis

Full scientific name Bacillus gobiensis Liu et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
43836	positive	1.3-1.5 µm	0.9-1.1 µm	rod-shaped

Colony morphology

@ref	Colony size	Colony color	Colony shape	Medium used
43836	2-3 mm	Cream white	circular	Nutrient agar

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
43836	Nutrient agar (NA)
24153	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
24153	positive	growth	30
43836	positive	growth	15-40
43836	positive	optimum	30

Culture pH

@ref	Ability	Type	PH	PH range
43836	positive	optimum	7
43836	positive	growth	5-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43836	aerobe
125439	obligate aerobe	91.6

Spore formation

@ref	Spore description	Type of spore	Spore formation
43836	Oval, located subterminally and give rise to swollen sporangia	endospore

Halophily

@ref	Halophily level	Salt	Growth	Tested relation	Concentration
43836		NaCl	positive	growth	0-3 %(w/v)
43836	non-halophilic	NaCl	positive	optimum	0 %(w/v)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
43836	16808 ChEBI	2-dehydro-D-gluconate	-	builds acid from
43836	58143 ChEBI	5-dehydro-D-gluconate	-	builds acid from
43836	27613 ChEBI	amygdalin	-	builds acid from
43836	18305 ChEBI	arbutin	+	builds acid from
43836		casein	-	hydrolysis
43836	17057 ChEBI	cellobiose	+	builds acid from
43836	16947 ChEBI	citrate	-	carbon source
43836	17108 ChEBI	D-arabinose	-	builds acid from
43836	18333 ChEBI	D-arabitol	-	builds acid from
43836	28847 ChEBI	D-fucose	-	builds acid from
43836	62318 ChEBI	D-lyxose	-	builds acid from
43836	16443 ChEBI	D-tagatose	-	builds acid from
43836	65327 ChEBI	D-xylose	-	builds acid from
43836	17113 ChEBI	erythritol	-	builds acid from
43836	4853 ChEBI	esculin	+	builds acid from
43836	28757 ChEBI	fructose	+	builds acid from
43836	16813 ChEBI	galactitol	-	builds acid from
43836	28260 ChEBI	galactose	-	builds acid from
43836	5291 ChEBI	gelatin	+	hydrolysis
43836	28066 ChEBI	gentiobiose	+	builds acid from
43836	24265 ChEBI	gluconate	+	builds acid from
43836	17234 ChEBI	glucose	+	builds acid from
43836	17234 ChEBI	glucose	+	fermentation
43836	17754 ChEBI	glycerol	-	builds acid from
43836	28087 ChEBI	glycogen	-	builds acid from
43836	15443 ChEBI	inulin	+	builds acid from
43836	30849 ChEBI	L-arabinose	-	builds acid from
43836	18403 ChEBI	L-arabitol	-	builds acid from
43836	18287 ChEBI	L-fucose	-	builds acid from
43836	65328 ChEBI	L-xylose	-	builds acid from
43836	17716 ChEBI	lactose	-	builds acid from
43836	17306 ChEBI	maltose	+	builds acid from
43836	29864 ChEBI	mannitol	+	builds acid from
43836	37684 ChEBI	mannose	+	builds acid from
43836	6731 ChEBI	melezitose	+	builds acid from
43836	28053 ChEBI	melibiose	+	builds acid from
43836	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from
43836	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from
43836	37657 ChEBI	methyl D-glucoside	+	builds acid from
43836	17268 ChEBI	myo-inositol	+	builds acid from
43836	506227 ChEBI	N-acetylglucosamine	+	builds acid from
43836	17632 ChEBI	nitrate	-	reduction
43836	16634 ChEBI	raffinose	+	builds acid from
43836	26546 ChEBI	rhamnose	-	builds acid from
43836	15963 ChEBI	ribitol	-	builds acid from
43836	33942 ChEBI	ribose	-	builds acid from
43836	17814 ChEBI	salicin	+	builds acid from
43836	30911 ChEBI	sorbitol	+	builds acid from
43836	27922 ChEBI	sorbose	-	builds acid from
43836	28017 ChEBI	starch	+	builds acid from
43836	28017 ChEBI	starch	+	hydrolysis
43836	17992 ChEBI	sucrose	+	builds acid from
43836	27082 ChEBI	trehalose	+	builds acid from
43836	32528 ChEBI	turanose	+	builds acid from
43836	17151 ChEBI	xylitol	-	builds acid from

Metabolite production

@ref	Chebi-ID	Metabolite
43836	15688 ChEBI	acetoin
43836	16136 ChEBI	hydrogen sulfide
43836	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Citrate test	Methylred-test
43836	15688 ChEBI	acetoin	-
43836	16947 ChEBI	citrate		-
43836	17234 ChEBI	glucose			+

Enzymes

@ref	Value	Activity	Ec
43836	arginine dihydrolase	-	3.5.3.6
43836	beta-galactosidase	-	3.2.1.23
43836	catalase	+	1.11.1.6
43836	cytochrome oxidase	-	1.9.3.1
43836	lysine decarboxylase	-	4.1.1.18
43836	ornithine decarboxylase	-	4.1.1.17
43836	tryptophan deaminase	-	4.1.99.1
43836	urease	-	3.5.1.5

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	biotin biosynthesis	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	valine metabolism	100	9 of 9
66794	coenzyme A metabolism	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	glycine betaine biosynthesis	100	5 of 5
66794	acetate fermentation	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	pentose phosphate pathway	100	11 of 11
66794	adipate degradation	100	2 of 2
66794	enterobactin biosynthesis	100	3 of 3
66794	vitamin B1 metabolism	100	13 of 13
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	folate polyglutamylation	100	1 of 1
66794	tetrahydrofolate metabolism	100	14 of 14
66794	aerobactin biosynthesis	100	1 of 1
66794	methylglyoxal degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	taurine degradation	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	gluconeogenesis	100	8 of 8
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	allantoin degradation	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	ketogluconate metabolism	87.5	7 of 8
66794	pyrimidine metabolism	86.67	39 of 45
66794	alanine metabolism	86.21	25 of 29
66794	heme metabolism	85.71	12 of 14
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	purine metabolism	85.11	80 of 94
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycolysis	82.35	14 of 17
66794	proline metabolism	81.82	9 of 11
66794	degradation of sugar alcohols	81.25	13 of 16
66794	methionine metabolism	80.77	21 of 26
66794	flavin biosynthesis	80	12 of 15
66794	lipoate biosynthesis	80	4 of 5
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	photosynthesis	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	isoleucine metabolism	75	6 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	citric acid cycle	71.43	10 of 14
66794	non-pathway related	71.05	27 of 38
66794	myo-inositol biosynthesis	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	urea cycle	69.23	9 of 13
66794	tryptophan metabolism	68.42	26 of 38
66794	arginine metabolism	66.67	16 of 24
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	histidine metabolism	65.52	19 of 29
66794	oxidative phosphorylation	63.74	58 of 91
66794	ascorbate metabolism	63.64	14 of 22
66794	sulfate reduction	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	coenzyme M biosynthesis	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	cysteine metabolism	55.56	10 of 18
66794	lipid metabolism	54.84	17 of 31
66794	d-xylose degradation	54.55	6 of 11
66794	leucine metabolism	53.85	7 of 13
66794	kanosamine biosynthesis II	50	1 of 2
66794	degradation of hexoses	50	9 of 18
66794	ginsenoside metabolism	50	8 of 16
66794	lysine metabolism	50	21 of 42
66794	glutathione metabolism	50	7 of 14
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	pantothenate biosynthesis	50	3 of 6
66794	CMP-KDO biosynthesis	50	2 of 4
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	quinate degradation	50	1 of 2
66794	glycine metabolism	50	5 of 10
66794	ethanol fermentation	50	1 of 2
66794	degradation of pentoses	46.43	13 of 28
66794	metabolism of disaccharids	45.45	5 of 11
66794	vitamin B6 metabolism	45.45	5 of 11
66794	degradation of sugar acids	44	11 of 25
66794	androgen and estrogen metabolism	43.75	7 of 16
66794	ubiquinone biosynthesis	42.86	3 of 7
66794	tyrosine metabolism	42.86	6 of 14
66794	bile acid biosynthesis, neutral pathway	41.18	7 of 17
66794	3-chlorocatechol degradation	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	hydrogen production	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	4-hydroxyphenylacetate degradation	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	carnitine metabolism	37.5	3 of 8
66794	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
66794	phenol degradation	35	7 of 20
66794	nitrate assimilation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	lipid A biosynthesis	33.33	3 of 9
66794	arachidonic acid metabolism	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	sulfoquinovose degradation	33.33	1 of 3
66794	chlorophyll metabolism	27.78	5 of 18
66794	cholesterol biosynthesis	27.27	3 of 11
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	vitamin B12 metabolism	23.53	8 of 34
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24153	weed rhizosphere soil	Gobi desert, Xinjiang region	China	CHN	Asia
43836	Weed rhizosphere soil of the Gobi desert	Gobi desert, Xinjiang Autonomous Region	China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24153	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	IMG accession	NCBI tax ID	Score
66792	ASM127870v1 assembly for Bacillus gobiensis FJAT-4402	chromosome	GCA_001278705	2651869764	1441095	87.3

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24153	Bacillus gobiensis 16S ribosomal RNA gene, partial sequence	KF995513	1432		1441095

GC content

@ref	GC-content (mol%)	Method
24153	42	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Bacillus gobiensis FJAT-4402
IMG: 2651869764

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	85.10	no
125439	motility	BacteriaNetⓘ	yes	76.00	no
125439	gram_stain	BacteriaNetⓘ	variable	76.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus gobiensis sp. nov., isolated from a soil sample.	Liu B, Liu GH, Cetin S, Schumann P, Pan ZZ, Chen QQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000729	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24153	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29500
#43836	Bo Liu, Guo-Hong Liu, Sengonca Cetin, Peter Schumann, Zhi-Zhen Pan, Qian-Qian Chen: Bacillus gobiensis sp. nov., isolated from a soil sample. IJSEM 66: 379 - 384 2016 ( DOI 10.1099/ijsem.0.000729 , PubMed 26530456 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Bacillus gobiensis (DSM 29500, CGMCC 1.12902, FJAT-4402)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001278705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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