Name: Bacillus gobiensis FJAT-4402
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132364

Type strain:

Species: Bacillus gobiensis

Strain Designation: FJAT-4402

Culture col. no.: DSM 29500, CGMCC 1.12902

Strain history: <- G. Liu, Fujian Academy of Agricultural Sciences, Fuzhou, China; FJAT-4402

NCBI tax ID(s): 1441095 (species)

SI-ID 398886

DSM 29500

Section

Bacillus gobiensis FJAT-4402 is an aerobe, spore-forming, Gram-positive bacterium that forms circular colonies and was isolated from weed rhizosphere soil.

colony-forming
Gram-positive
motile
rod-shaped
spore-forming
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Bacillus*
	Species	**Bacillus gobiensis**
	Full Scientific Name (LPSN)	Bacillus gobiensis Liu et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #43836]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43836]	Cell length	1.3-1.5 µm

[Ref.: #43836]	Cell width	0.9-1.1 µm

[Ref.: #43836]	Cell shape	rod-shaped

[Ref.: #43836]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %92.641

[Ref.: #43836]	Colony size	2-3 mm
[Ref.: #43836]	Colony color	Cream white
[Ref.: #43836]	Colony shape	circular
[Ref.: #43836]	Cultivation medium used	Nutrient agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43836]

Culture medium

Nutrient agar (NA)

[Ref.: #43836]

Culture medium growth

[Ref.: #24153]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #24153]

Culture medium growth

[Ref.: #24153]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24153]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24153]	growth	30 °C
[Ref.: #43836]	growth	15-40 °C
[Ref.: #43836]	optimum	30 °C

[Ref.: #24153]	Temperature range	mesophilic
[Ref.: #43836]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43836]			optimum	7
[Ref.: #43836]			growth	5-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43836]

Oxygen tolerance

aerobe

[Ref.: #43836]	Spore description	Oval, located subterminally and give rise to swollen sporangia
[Ref.: #43836]	Type of spore	endospore
[Ref.: #43836]	Ability of spore formation	yes
[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

[Ref.: #43836]

Halophily / tolerance level

non-halophilic

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #43836]		NaCl		growth	0-3	%(w/v)
[Ref.: #43836]		NaCl		optimum	0	%(w/v)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43836]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43836]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #43836]	amygdalin ChEBI	-	builds acid from
[Ref.: #43836]	arbutin ChEBI	+	builds acid from
[Ref.: #43836]	casein	-	hydrolysis
[Ref.: #43836]	cellobiose ChEBI	+	builds acid from
[Ref.: #43836]	citrate ChEBI	-	carbon source
[Ref.: #43836]	D-arabinose ChEBI	-	builds acid from
[Ref.: #43836]	D-arabitol ChEBI	-	builds acid from
[Ref.: #43836]	D-fucose ChEBI	-	builds acid from
[Ref.: #43836]	D-lyxose ChEBI	-	builds acid from
[Ref.: #43836]	D-tagatose ChEBI	-	builds acid from
[Ref.: #43836]	D-xylose ChEBI	-	builds acid from
[Ref.: #43836]	erythritol ChEBI	-	builds acid from
[Ref.: #43836]	esculin ChEBI	+	builds acid from
[Ref.: #43836]	fructose ChEBI	+	builds acid from
[Ref.: #43836]	galactitol ChEBI	-	builds acid from
[Ref.: #43836]	galactose ChEBI	-	builds acid from
[Ref.: #43836]	gelatin ChEBI	+	hydrolysis
[Ref.: #43836]	gentiobiose ChEBI	+	builds acid from
[Ref.: #43836]	gluconate ChEBI	+	builds acid from
[Ref.: #43836]	glucose ChEBI	+	builds acid from
[Ref.: #43836]	glucose ChEBI	+	fermentation
[Ref.: #43836]	glycerol ChEBI	-	builds acid from
[Ref.: #43836]	glycogen ChEBI	-	builds acid from
[Ref.: #43836]	inulin ChEBI	+	builds acid from
[Ref.: #43836]	L-arabinose ChEBI	-	builds acid from
[Ref.: #43836]	L-arabitol ChEBI	-	builds acid from
[Ref.: #43836]	L-fucose ChEBI	-	builds acid from
[Ref.: #43836]	L-xylose ChEBI	-	builds acid from
[Ref.: #43836]	lactose ChEBI	-	builds acid from
[Ref.: #43836]	maltose ChEBI	+	builds acid from
[Ref.: #43836]	mannitol ChEBI	+	builds acid from
[Ref.: #43836]	mannose ChEBI	+	builds acid from
[Ref.: #43836]	melezitose ChEBI	+	builds acid from
[Ref.: #43836]	melibiose ChEBI	+	builds acid from
[Ref.: #43836]	methyl alpha-D-mannoside ChEBI	-	builds acid from
[Ref.: #43836]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from
[Ref.: #43836]	methyl D-glucoside ChEBI	+	builds acid from
[Ref.: #43836]	myo-inositol ChEBI	+	builds acid from
[Ref.: #43836]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #43836]	nitrate ChEBI	-	reduction
[Ref.: #43836]	raffinose ChEBI	+	builds acid from
[Ref.: #43836]	rhamnose ChEBI	-	builds acid from
[Ref.: #43836]	ribitol ChEBI	-	builds acid from
[Ref.: #43836]	ribose ChEBI	-	builds acid from
[Ref.: #43836]	salicin ChEBI	+	builds acid from
[Ref.: #43836]	sorbitol ChEBI	+	builds acid from
[Ref.: #43836]	sorbose ChEBI	-	builds acid from
[Ref.: #43836]	starch ChEBI	+	builds acid from
[Ref.: #43836]	starch ChEBI	+	hydrolysis
[Ref.: #43836]	sucrose ChEBI	+	builds acid from
[Ref.: #43836]	trehalose ChEBI	+	builds acid from
[Ref.: #43836]	turanose ChEBI	+	builds acid from
[Ref.: #43836]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43836]	acetoin ChEBI	no
[Ref.: #43836]	hydrogen sulfide ChEBI	no
[Ref.: #43836]	indole ChEBI	no

	Metabolite	Voges-Proskauer-test	Methylred-test	Citrate test
[Ref.: #43836]	acetoin ChEBI	-
[Ref.: #43836]	citrate ChEBI			-
[Ref.: #43836]	glucose ChEBI		+

	Enzyme	Enzyme activity	EC number
[Ref.: #43836]	arginine dihydrolase	-	3.5.3.6
[Ref.: #43836]	beta-galactosidase	-	3.2.1.23
[Ref.: #43836]	catalase	+	1.11.1.6
[Ref.: #43836]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43836]	lysine decarboxylase	-	4.1.1.18
[Ref.: #43836]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #43836]	tryptophan deaminase	-	4.1.99.1
[Ref.: #43836]	urease	-	3.5.1.5

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	biotin biosynthesis	100	4 of 4
[Ref.: #66794]	teichoic acid biosynthesis	100	1 of 1
[Ref.: #66794]	valine metabolism	100	9 of 9
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	palmitate biosynthesis	100	22 of 22
[Ref.: #66794]	glycine betaine biosynthesis	100	5 of 5
[Ref.: #66794]	acetate fermentation	100	4 of 4
[Ref.: #66794]	vitamin K metabolism	100	5 of 5
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	enterobactin biosynthesis	100	3 of 3
[Ref.: #66794]	vitamin B1 metabolism	100	13 of 13
[Ref.: #66794]	cis-vaccenate biosynthesis	100	2 of 2
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	tetrahydrofolate metabolism	100	14 of 14
[Ref.: #66794]	aerobactin biosynthesis	100	1 of 1
[Ref.: #66794]	methylglyoxal degradation	100	5 of 5
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	taurine degradation	100	1 of 1
[Ref.: #66794]	suberin monomers biosynthesis	100	2 of 2
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	gluconeogenesis	100	8 of 8
[Ref.: #66794]	Entner Doudoroff pathway	90	9 of 10
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	allantoin degradation	88.89	8 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	88.89	8 of 9
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	aspartate and asparagine metabolism	88.89	8 of 9
[Ref.: #66794]	serine metabolism	88.89	8 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	88.89	8 of 9
[Ref.: #66794]	C4 and CAM-carbon fixation	87.5	7 of 8
[Ref.: #66794]	ketogluconate metabolism	87.5	7 of 8
[Ref.: #66794]	pyrimidine metabolism	86.67	39 of 45
[Ref.: #66794]	alanine metabolism	86.21	25 of 29
[Ref.: #66794]	heme metabolism	85.71	12 of 14
[Ref.: #66794]	reductive acetyl coenzyme A pathway	85.71	6 of 7
[Ref.: #66794]	propanol degradation	85.71	6 of 7
[Ref.: #66794]	purine metabolism	85.11	80 of 94
[Ref.: #66794]	phenylalanine metabolism	84.62	11 of 13
[Ref.: #66794]	NAD metabolism	83.33	15 of 18
[Ref.: #66794]	glycolysis	82.35	14 of 17
[Ref.: #66794]	proline metabolism	81.82	9 of 11
[Ref.: #66794]	degradation of sugar alcohols	81.25	13 of 16
[Ref.: #66794]	methionine metabolism	80.77	21 of 26
[Ref.: #66794]	flavin biosynthesis	80	12 of 15
[Ref.: #66794]	lipoate biosynthesis	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	peptidoglycan biosynthesis	80	12 of 15
[Ref.: #66794]	glutamate and glutamine metabolism	78.57	22 of 28
[Ref.: #66794]	photosynthesis	78.57	11 of 14
[Ref.: #66794]	d-mannose degradation	77.78	7 of 9
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	butanoate fermentation	75	3 of 4
[Ref.: #66794]	cardiolipin biosynthesis	71.43	5 of 7
[Ref.: #66794]	citric acid cycle	71.43	10 of 14
[Ref.: #66794]	non-pathway related	71.05	27 of 38
[Ref.: #66794]	myo-inositol biosynthesis	70	7 of 10
[Ref.: #66794]	propionate fermentation	70	7 of 10
[Ref.: #66794]	urea cycle	69.23	9 of 13
[Ref.: #66794]	tryptophan metabolism	68.42	26 of 38
[Ref.: #66794]	arginine metabolism	66.67	16 of 24
[Ref.: #66794]	acetyl CoA biosynthesis	66.67	2 of 3
[Ref.: #66794]	octane oxidation	66.67	2 of 3
[Ref.: #66794]	formaldehyde oxidation	66.67	2 of 3
[Ref.: #66794]	acetoin degradation	66.67	2 of 3
[Ref.: #66794]	cyanate degradation	66.67	2 of 3
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	histidine metabolism	65.52	19 of 29
[Ref.: #66794]	oxidative phosphorylation	63.74	58 of 91
[Ref.: #66794]	ascorbate metabolism	63.64	14 of 22
[Ref.: #66794]	sulfate reduction	61.54	8 of 13
[Ref.: #66794]	isoprenoid biosynthesis	61.54	16 of 26
[Ref.: #66794]	coenzyme M biosynthesis	60	6 of 10
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	factor 420 biosynthesis	60	3 of 5
[Ref.: #66794]	arachidonate biosynthesis	60	3 of 5
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	lipid metabolism	54.84	17 of 31
[Ref.: #66794]	d-xylose degradation	54.55	6 of 11
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	kanosamine biosynthesis II	50	1 of 2
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	ginsenoside metabolism	50	8 of 16
[Ref.: #66794]	lysine metabolism	50	21 of 42
[Ref.: #66794]	glutathione metabolism	50	7 of 14
[Ref.: #66794]	glycolate and glyoxylate degradation	50	3 of 6
[Ref.: #66794]	pantothenate biosynthesis	50	3 of 6
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	quinate degradation	50	1 of 2
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	degradation of pentoses	46.43	13 of 28
[Ref.: #66794]	metabolism of disaccharids	45.45	5 of 11
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	degradation of sugar acids	44	11 of 25
[Ref.: #66794]	androgen and estrogen metabolism	43.75	7 of 16
[Ref.: #66794]	ubiquinone biosynthesis	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	bile acid biosynthesis, neutral pathway	41.18	7 of 17
[Ref.: #66794]	3-chlorocatechol degradation	40	2 of 5
[Ref.: #66794]	gallate degradation	40	2 of 5
[Ref.: #66794]	hydrogen production	40	2 of 5
[Ref.: #66794]	3-phenylpropionate degradation	40	6 of 15
[Ref.: #66794]	4-hydroxyphenylacetate degradation	40	4 of 10
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	phenylpropanoid biosynthesis	38.46	5 of 13
[Ref.: #66794]	carnitine metabolism	37.5	3 of 8
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	36.36	4 of 11
[Ref.: #66794]	phenol degradation	35	7 of 20
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	arachidonic acid metabolism	33.33	6 of 18
[Ref.: #66794]	sphingosine metabolism	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	chlorophyll metabolism	27.78	5 of 18
[Ref.: #66794]	cholesterol biosynthesis	27.27	3 of 11
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	toluene degradation	25	1 of 4
[Ref.: #66794]	vitamin B12 metabolism	23.53	8 of 34
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24153]	Sample type/isolated from	weed rhizosphere soil
[Ref.: #24153]	Geographic location (country and/or sea, region)	Gobi desert, Xinjiang region
[Ref.: #24153]	Country	China
[Ref.: #24153]	Country ISO 3 Code	CHN
[Ref.: #24153]	Continent	Asia

[Ref.: #43836]	Sample type/isolated from	Weed rhizosphere soil of the Gobi desert
[Ref.: #43836]	Geographic location (country and/or sea, region)	Gobi desert, Xinjiang Autonomous Region
[Ref.: #43836]	Country	China
[Ref.: #43836]	Country ISO 3 Code	CHN
[Ref.: #43836]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Desert
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Rhizosphere

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24153]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24153]	Bacillus gobiensis 16S ribosomal RNA gene, partial sequence	KF995513	1432	ENA	1441095 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bacillus gobiensis FJAT-4402	GCA_001278705	chromosome	GenBank	1441095 tax ID	*
[Ref.: #66792]	Bacillus gobiensis FJAT-4402	2651869764	complete	JGI IMG/M	1441095 tax ID	*

[Ref.: #24153]

GC-content

42 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bacillus gobiensis FJAT-4402 NCBI: GCA_001278705.1
[Ref.: #69481]	spore-forming	yes	100	no

Availability in culture collections External links

[Ref.: #24153]

Culture collection no.

DSM 29500, CGMCC 1.12902

[Ref.: #90710]

SI-ID 398886

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Bacillus gobiensis sp. nov., isolated from a soil sample.	Liu B, Liu GH, Cetin S, Schumann P, Pan ZZ, Chen QQ	Int J Syst Evol Microbiol	10.1099/ijsem.0.000729	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24153

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 29500

#43836

Bo Liu, Guo-Hong Liu, Sengonca Cetin, Peter Schumann, Zhi-Zhen Pan, Qian-Qian Chen: Bacillus gobiensis sp. nov., isolated from a soil sample. IJSEM 66: 379 - 384 2016 ( DOI 10.1099/ijsem.0.000729 , PubMed 26530456 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90710

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398886.1 )

* These data were automatically processed and therefore are not curated

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