Comamonas phosphati (DSM 26017, CGMCC 1.12294, WYH22-41)

Name: Comamonas phosphati (DSM 26017, CGMCC 1.12294, WYH22-41)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132361

Type strain

Strain Designation WYH22-41

Culture col. no. DSM 26017 CGMCC 1.12294 WYH22-41

NCBI tax ID(s) 1211803

Special Collections DSMZ Literature strains

History <- F. Xie, Henan Key Lab. Microbial Engineering, Zhengzhou, China; WYH22-41

Links

Comamonas phosphati WYH22-41 is a facultative anaerobe, chemoorganotroph, mesophilic prokaryote that forms circular colonies and was isolated from phosphate rock powder at a phosphate-mining field.

Gram-negative motile rod-shaped colony-forming facultative anaerobe chemoorganotroph mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407127

DSM 26017

@ref 20215

Last LPSN update 2026-02-09 11:31:41

Domain Bacteria

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Comamonadaceae

Genus Comamonas

Species Comamonas phosphati

Full scientific name Comamonas phosphati Xie et al. 2016

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
44040	negative	0.9-1.5 µm	0.4-0.7 µm	rod-shaped	polar
125439						91.8
125439	negative					99.9
125438	negative					97.5

Colony morphology

@ref	Colony shape	Incubation period	Medium used
44040	circular	2 days	Luria Bertani agar

Multimedia

@ref:	24150
multimedia content:	DSM_26017.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_26017.jpg
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
44040	LB (Luria-Bertani) MEDIUM
44040	Trypticase Soy Agar (TSA)
24150	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24150	positive	growth	28	mesophilic
44040	positive	optimum	30	mesophilic
44040	positive	growth	4-35

Culture pH

@ref	Ability	Type	PH	PH range
44040	positive	optimum	7
44040	positive	growth	5.0-9.0	alkaliphile

Physiology and metabolism

Oxygen tolerance

44040

Oxygen tolerancefacultative anaerobe

Nutrition type

44040

Typechemoorganotroph

Spore formation

@ref	Type of spore	Confidence
44040	spore
125439		99.8
125438		91.484

Halophily

@ref	Salt	Growth	Tested relation	Concentration
44040	NaCl	positive	growth	0-3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
44040	355715 ChEBI	4-nitrophenyl beta-D-galactopyranoside	+/-	hydrolysis
44040	17128 ChEBI	adipate	+	assimilation
44040	27613 ChEBI	amygdalin	-	builds acid from
44040	16947 ChEBI	citrate	-	assimilation
44040	17108 ChEBI	D-arabinose	+	builds acid from
44040	15824 ChEBI	D-fructose	-	assimilation
44040	17634 ChEBI	D-glucose	+	assimilation
44040	17634 ChEBI	D-glucose	+	builds acid from
44040	16899 ChEBI	D-mannitol	-	assimilation
44040	16899 ChEBI	D-mannitol	-	builds acid from
44040	16024 ChEBI	D-mannose	+	assimilation
44040	17924 ChEBI	D-sorbitol	-	builds acid from
44040	27689 ChEBI	decanoate	-	assimilation
44040	4853 ChEBI	esculin	+/-	hydrolysis
44040	16236 ChEBI	ethanol	-	assimilation
44040	24265 ChEBI	gluconate	+	assimilation
44040	17754 ChEBI	glycerol	+	assimilation
44040	16977 ChEBI	L-alanine	+	assimilation
44040	30849 ChEBI	L-arabinose	-	assimilation
44040	16467 ChEBI	L-arginine	-	assimilation
44040	17196 ChEBI	L-asparagine	+	assimilation
44040	29991 ChEBI	L-aspartate	-	assimilation
44040	15971 ChEBI	L-histidine	+	assimilation
44040	15603 ChEBI	L-leucine	+	assimilation
44040	16643 ChEBI	L-methionine	-	assimilation
44040	17295 ChEBI	L-phenylalanine	+	assimilation
44040	17203 ChEBI	L-proline	-	assimilation
44040	62345 ChEBI	L-rhamnose	-	assimilation
44040	62345 ChEBI	L-rhamnose	+	builds acid from
44040	17115 ChEBI	L-serine	-	assimilation
44040	17266 ChEBI	L-sorbose	-	assimilation
44040	16857 ChEBI	L-threonine	-	assimilation
44040	25115 ChEBI	malate	+	assimilation
44040	17306 ChEBI	maltose	-	assimilation
44040	28053 ChEBI	melibiose	+	builds acid from
44040	17790 ChEBI	methanol	-	assimilation
44040	17268 ChEBI	myo-inositol	-	builds acid from
44040	506227 ChEBI	N-acetylglucosamine	-	assimilation
44040	17632 ChEBI	nitrate	+	reduction
44040	16301 ChEBI	nitrite	-	reduction
44040	16634 ChEBI	raffinose	+	assimilation
44040	17992 ChEBI	sucrose	-	assimilation
44040	17992 ChEBI	sucrose	-	builds acid from
44040	27082 ChEBI	trehalose	-	assimilation
44040	18222 ChEBI	xylose	-	assimilation

Antibiotic resistance

@ref	ChEBI	Metabolite
44040	28669	bacitracin
44040	17698	chloramphenicol
44040	100241	ciprofloxacin
44040	48923	erythromycin
44040	6104	kanamycin
44040	7507	neomycin
44040	100246	norfloxacin
44040	28368	novobiocin
44040	18208	penicillin g
44040	28077	rifampicin
44040	28001	vancomycin

Metabolite production

@ref	Chebi-ID	Metabolite
44040	15688 ChEBI	acetoin
44040	16136 ChEBI	hydrogen sulfide
44040	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
44040	15688 ChEBI	acetoin	+

Enzymes

@ref	Value	Activity	Ec
44040	acid phosphatase	+	3.1.3.2
44040	alkaline phosphatase	+	3.1.3.1
44040	alpha-chymotrypsin	-	3.4.21.1
44040	alpha-fucosidase	-	3.2.1.51
44040	alpha-galactosidase	-	3.2.1.22
44040	alpha-glucosidase	-	3.2.1.20
44040	alpha-mannosidase	-	3.2.1.24
44040	amylase	-
44040	arginine dihydrolase	+	3.5.3.6
44040	beta-galactosidase	+/-	3.2.1.23
44040	beta-glucosidase	+/-	3.2.1.21
44040	beta-glucuronidase	-	3.2.1.31
44040	catalase	+	1.11.1.6
44040	cystine arylamidase	-	3.4.11.3
44040	cytochrome oxidase	+	1.9.3.1
44040	esterase (C 4)	+
44040	esterase Lipase (C 8)	+
44040	gelatinase	-
44040	leucine arylamidase	+	3.4.11.1
44040	lipase (C 14)	-
44040	lysine decarboxylase	-	4.1.1.18
44040	N-acetyl-beta-glucosaminidase	-	3.2.1.52
44040	naphthol-AS-BI-phosphohydrolase	+
44040	ornithine decarboxylase	-	4.1.1.17
44040	trypsin	-	3.4.21.4
44040	tryptophan deaminase	+	4.1.99.1
44040	urease	+	3.5.1.5
44040	valine arylamidase	-

Fatty acid profile

Metadata FA analysis

@ref

44040

Fatty acid	Percentage
C16:0	38.1
C17:0-cyclo	24.8
C16:1ω6c / C16:1ω7c	11.2
C18:1ω6c / C18:1ω7c	10
C16:0-2-OH	3.7
C10:0 3OH	3.4
C12:0	2.9
C16:1 2OH	2.1
C19:0-cycloω8c	1.6
C14:0 2OH	0.7
C19:0 iso	0.4
C14:0	0.4
C17:0	0.3
C18:0	0.3
C15:0 2OH	0.1
C10:0	0.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Geologic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Enrichment culture	Enrichment culture composition	Enrichment culture duration	Enrichment culture temperature
24150	phosphate rock powder at a phosphate-mining field	Yunnan Province, suburb of Kunming	China	CHN	Asia
44040	phosphate rock powder samples from a phosphate-mining field	Kumming, Yunnan Province	China	CHN	Asia	LB	pH 7.2; 1 % tryptone, 1 % NaCl and 0.5 % yeast extract, all w/v	4-5 days	30

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24150	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1463708v1 assembly for Comamonas phosphati CGMCC 1.12294	scaffold	GCA_014637085	1211803.3	2995906363	1211803	25.77

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24150	Comamonas phosphati 16S ribosomal RNA gene, partial sequence	JQ246447	1490		1211803

GC content

@ref	GC-content (mol%)	Method
24150	62.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Comamonas phosphati CGMCC 1.12294
NCBI: GCA_014637085

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	72.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	motility	BacteriaNetⓘ	yes	91.80	no
125439	spore_formation	BacteriaNetⓘ	no	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Comamonas phosphati CGMCC 1.12294
NCBI: GCA_014637085.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.50	yes
125438	anaerobic	anaerobicⓘ	no	97.55	yes
125438	aerobic	aerobicⓘ	yes	82.86	yes
125438	spore-forming	spore-formingⓘ	no	91.48	no
125438	thermophilic	thermophileⓘ	no	97.46	yes
125438	flagellated	motile2+ⓘ	yes	81.38	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Comamonas phosphati sp. nov., isolated from a phosphate mine.	Xie F, Ma H, Quan S, Liu D, Chen G	Int J Syst Evol Microbiol	10.1099/ijsem.0.000742	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24150	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 26017
#44040	Fuhong Xie, Huan Ma, Shujing Quan, Dehai Liu and Guocan Chen: Comamonas phosphati sp. nov., isolated from a phosphate mine. IJSEM 66: 456 - 461 2016 ( DOI 10.1099/ijsem.0.000742 , PubMed 26541594 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Comamonas phosphati (DSM 26017, CGMCC 1.12294, WYH22-41)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Nutrition type

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile?

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014637085

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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Fatty acid profile