Occallatibacter riparius (DSM 25169, LMG 26947, 307)

Name: Occallatibacter riparius (DSM 25169, LMG 26947, 307)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132352

Type strain

Strain Designation 307

Culture col. no. DSM 25169 LMG 26947 307

NCBI tax ID(s) 1002689

Special Collections DSMZ

Links

Occallatibacter riparius 307 is a mesophilic prokaryote that has multiple antibiotic resistances and was isolated from sandy river-bank soil covered with water and grown with the wild rice species Oryza longistaminata.

antibiotic resistance mesophilic 16S sequence

Name and taxonomic classification

SI-ID 379788

LMG 26947,DSM 25169

@ref 20215

Last LPSN update 2025-12-16 10:01:29

Domain Pseudomonadati

Phylum Acidobacteriota

Class Terriglobia

Order Terriglobales

Family Acidobacteriaceae

Genus Occallatibacter

Species Occallatibacter riparius

Full scientific name Occallatibacter riparius Foesel et al. 2016

BacDive ID	Other strains from **Occallatibacter riparius** (1)	Type strain
132351	O. riparius 277, DSM 25168, LMG 26948 (type strain)

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24141	SSE/HD1:10 (DSMZ Medium 1426)		Medium recipe at MediaDive	Name: SSE/HD 1:10 MEDIUM (DSMZ Medium 1426) Composition: MES 1.95 g/l Peptone 0.5 g/l CaSO4 x 2 H2O 0.4303 g/l MgSO4 x 7 H2O 0.3695 g/l Yeast extract 0.25 g/l Na NO3 0.212 g/l CaCl2 x 2 H2O 0.1469 g/l Ca(NO3)2 x 4 H2O 0.118 g/l MgCl2 x 6 H2O 0.1018 g/l Glucose 0.1 g/l (NH4)2SO4 0.09915 g/l NH4Cl 0.05345 g/l K2SO4 0.0435 g/l FeSO4 x 7 H2O 0.00555 g/l KH2PO4 0.00340213 g/l HCl 0.0025 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l Pyridoxine hydrochloride 1e-05 g/l H3BO3 6e-06 g/l Lipoic acid 5e-06 g/l D-Calcium pantothenate 5e-06 g/l Nicotinic acid 5e-06 g/l Riboflavin 5e-06 g/l Thiamine-HCl x 2 H2O 5e-06 g/l p-Aminobenzoic acid 5e-06 g/l Folic acid 2e-06 g/l Biotin 2e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24141	positive	growth	28	mesophilic

Physiology and metabolism

Antibiotic susceptibility testing

	Test 1
@ref	24141
Medium	M 1426
Incubation temperature	28
Oxygen condition	aerob
Manual_annotation	1
	Inhibition zone diameter in mm
Penicillin G	0
Oxacillin	0
Ampicillin	0
Ticarcillin	0
Mezlocillin	0
Cefalotin	0
Cefazolin	0
Cefotaxime	0
Aztreonam	0
Imipenem	0
Tetracycline	14
Chloramphenicol	0
Gentamycin	0
Amikacin	0
Vancomycin	10
Erythromycin	0
Lincomycin	0
Ofloxacin	0
Norfloxacin	0
Colistin	0
Pipemidic acid	0
Nitrofurantoin	0
Bacitracin	0
Polymyxin b	0
Kanamycin	16
Neomycin	0
Doxycycline	0
Ceftriaxone	0
Clindamycin	0
Fosfomycin	>50
Moxifloxacin	0
Linezolid	0
Nystatin	0
Quinupristin/dalfopristin	0
Teicoplanin	10
Piperacillin/tazobactam	0

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	-	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	-	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68369	gelatinase	-		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
24141	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.
24141	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24141	sandy river-bank soil covered with water and grown with the wild rice species Oryza longistaminata	Oryza longistaminata	North-East, Okavango river (17° 51' 59'' S 19° 54' 24'' E, 1065 m above sea level)	Namibia	NAM	Africa	-17.8664	19.9067 -17.8664/19.9067

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24141	1	Risk group (German classification)

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
24141	Occallatibacter riparius strain 307 16S ribosomal RNA gene, partial sequence	HQ995660	1463		1002689

GC content

@ref	GC-content (mol%)	Method
24141	59.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Pheno- and Genotyping of Hopanoid Production in Acidobacteria.	Damste JSS, Rijpstra WIC, Dedysh SN, Foesel BU, Villanueva L.	Front Microbiol	10.3389/fmicb.2017.00968	2017
Phylogeny	Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae.	Foesel BU, Mayer S, Luckner M, Wanner G, Rohde M, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000700	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24141	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25169
#68369	Automatically annotated from API 20NE .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Occallatibacter riparius (DSM 25169, LMG 26947, 307)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Antibiotic susceptibility testing

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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