Name: Occallatibacter riparius 277
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132351

Type strain:

Species: Occallatibacter riparius

Strain Designation: 277

Culture col. no.: DSM 25168, LMG 26948

Strain history: <- B. Fösel, DSMZ GmbH, Germany; strain 277

NCBI tax ID(s): 1002689 (species)

SI-ID 379789

LMG 26948, DSM 25168

Other strains from Occallatibacter riparius

O. riparius 307, DSM 25169, LMG 26947

Section

Occallatibacter riparius 277 is an obligate aerobe, chemoorganotroph, Gram-negative bacterium that was isolated from sandy river-bank soil covered with water and grown with the wild rice species Oryza longistaminata.

Gram-negative
motile
rod-shaped
chemoorganotroph
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Acidobacteriota*
	Class	*Terriglobia*
	Order	*Terriglobales*
	Family	*Acidobacteriaceae*
	Genus	*Occallatibacter*
	Species	**Occallatibacter riparius**
	Full Scientific Name (LPSN)	Occallatibacter riparius Foesel et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #44065]	Gram stain	negative

[Ref.: #44065]	Cell length	1.0-2.0 µm

[Ref.: #44065]	Cell width	0.6-0.7 µm

[Ref.: #44065]	Cell shape	rod-shaped

[Ref.: #44065]	Motility	yes

[Ref.: #44065]	Colony size	2 mm
[Ref.: #44065]	Colony color	white-cream-pink
[Ref.: #44065]	Cultivation medium used	SSE/HD

Information on culture and growth conditions Culture and growth conditions

[Ref.: #44065]

Culture medium

SSE/HD

[Ref.: #44065]

Culture medium growth

[Ref.: #44065]

Culture medium composition

expand / minimize

[Ref.: #24140]

Culture medium

SSE/HD1:10 (DSMZ Medium 1426)

[Ref.: #24140]

Culture medium growth

[Ref.: #24140]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24140]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24140]	growth	28 °C
[Ref.: #44065]	growth	11-40 °C
[Ref.: #44065]	optimum	26-37 °C

[Ref.: #24140]	Temperature range	mesophilic
[Ref.: #44065]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #44065]			optimum	5.0-6.5
[Ref.: #44065]			growth	3.5-8.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44065]

Oxygen tolerance

obligate aerobe

[Ref.: #44065]

Nutrition type

chemoorganotroph

[Ref.: #44065]	Type of spore	spore
[Ref.: #44065]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #44065]		NaCl		growth	0-1	%(w/v)
[Ref.: #44065]		NaCl		optimum	0.5	%(w/v)

[Ref.: #44065]

Observation

binary fission

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44065]	acetate ChEBI	+	growth
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #44065]	alanine ChEBI	-	growth
[Ref.: #44065]	arabinitol ChEBI	-	growth
[Ref.: #44065]	arabinose ChEBI	-	growth
[Ref.: #44065]	arginine ChEBI	+	growth
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #44065]	aspartate ChEBI	+	growth
[Ref.: #44065]	butanol ChEBI	-	growth
[Ref.: #44065]	butyrate ChEBI	-	growth
[Ref.: #44065]	casamino acids	+	growth
[Ref.: #44065]	casein hydrolysate	+	growth
[Ref.: #44065]	cellobiose ChEBI	+	growth
[Ref.: #44065]	cellulose ChEBI	-	growth
[Ref.: #44065]	chitin ChEBI	-	growth
[Ref.: #44065]	citrate ChEBI	-	growth
[Ref.: #44065]	crotonate ChEBI	-	growth
[Ref.: #44065]	cysteine ChEBI	-	growth
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #44065]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #44065]	ethanol ChEBI	-	growth
[Ref.: #44065]	formate ChEBI	-	growth
[Ref.: #44065]	fructose ChEBI	+	growth
[Ref.: #44065]	fucose ChEBI	+	growth
[Ref.: #44065]	fumarate ChEBI	-	growth
[Ref.: #44065]	galactose ChEBI	+	growth
[Ref.: #44065]	gelatin ChEBI	+	hydrolysis
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #44065]	gluconate ChEBI	+	growth
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #44065]	glucose ChEBI	+	growth
[Ref.: #44065]	glutamate ChEBI	+	growth
[Ref.: #44065]	glycerol ChEBI	+	growth
[Ref.: #44065]	glycine ChEBI	-	growth
[Ref.: #44065]	glycolate ChEBI	-	growth
[Ref.: #44065]	histidine ChEBI	-	growth
[Ref.: #44065]	hydroxyproline ChEBI	-	growth
[Ref.: #44065]	isoleucine ChEBI	-	growth
[Ref.: #44065]	isovalerate ChEBI	-	growth
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #44065]	lactate ChEBI	-	growth
[Ref.: #44065]	lactose ChEBI	+	growth
[Ref.: #44065]	laminarin ChEBI	+	growth
[Ref.: #44065]	leucine ChEBI	-	growth
[Ref.: #44065]	lysine ChEBI	+	growth
[Ref.: #44065]	lyxose ChEBI	-	growth
[Ref.: #44065]	malate ChEBI	-	growth
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #44065]	malonate ChEBI	-	growth
[Ref.: #44065]	maltose ChEBI	+	growth
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #44065]	mannitol ChEBI	-	growth
[Ref.: #44065]	mannose ChEBI	+	growth
[Ref.: #44065]	melezitose ChEBI	+	growth
[Ref.: #44065]	methanol ChEBI	-	growth
[Ref.: #44065]	methionine ChEBI	-	growth
[Ref.: #44065]	myo-inositol ChEBI	-	growth
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #44065]	nicotinate ChEBI	-	growth
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #44065]	ornithine ChEBI	+	growth
[Ref.: #44065]	oxaloacetate ChEBI	-	growth
[Ref.: #44065]	pectin ChEBI	-	growth
[Ref.: #44065]	peptone	+	growth
[Ref.: #44065]	phenylalanine ChEBI	-	growth
[Ref.: #44065]	proline ChEBI	-	growth
[Ref.: #44065]	propanol ChEBI	-	growth
[Ref.: #44065]	propionate ChEBI	-	growth
[Ref.: #44065]	pyruvate ChEBI	-	growth
[Ref.: #44065]	raffinose ChEBI	+	growth
[Ref.: #44065]	rhamnose ChEBI	+	growth
[Ref.: #44065]	ribitol ChEBI	-	growth
[Ref.: #44065]	serine ChEBI	-	growth
[Ref.: #44065]	sorbitol ChEBI	+	growth
[Ref.: #44065]	sorbose ChEBI	-	growth
[Ref.: #44065]	starch ChEBI	+	growth
[Ref.: #44065]	succinate ChEBI	+	growth
[Ref.: #44065]	sucrose ChEBI	+	growth
[Ref.: #44065]	tartrate ChEBI	-	growth
[Ref.: #44065]	threonine ChEBI	-	growth
[Ref.: #44065]	trehalose ChEBI	+	growth
[Ref.: #44065]	tryptophan ChEBI	-	growth
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #44065]	tween 80 ChEBI	-	growth
[Ref.: #44065]	tyrosine ChEBI	+	growth
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #44065]	valine ChEBI	-	growth
[Ref.: #44065]	xylan ChEBI	-	growth
[Ref.: #44065]	xylitol ChEBI	-	growth
[Ref.: #44065]	xylose ChEBI	+	growth
[Ref.: #44065]	yeast extract	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #44065]	acetoin ChEBI	no
[Ref.: #44065]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #44065]	acid phosphatase	+	3.1.3.2
[Ref.: #44065]	alkaline phosphatase	+	3.1.3.1
[Ref.: #44065]	alpha-chymotrypsin	+/-	3.4.21.1
[Ref.: #44065]	alpha-fucosidase	+	3.2.1.51
[Ref.: #44065]	alpha-galactosidase	+	3.2.1.22
[Ref.: #44065]	alpha-glucosidase	+/-	3.2.1.20
[Ref.: #44065]	alpha-mannosidase	+/-	3.2.1.24
[Ref.: #44065]	arginine dihydrolase	-	3.5.3.6
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #44065]	beta-galactosidase	+	3.2.1.23
[Ref.: #44065]	beta-glucosidase	+	3.2.1.21
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #44065]	beta-glucuronidase	+	3.2.1.31
[Ref.: #44065]	catalase	+	1.11.1.6
[Ref.: #44065]	cystine arylamidase	+/-	3.4.11.3
[Ref.: #44065]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44065]	esterase (C 4)	+
[Ref.: #44065]	esterase Lipase (C 8)	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #44065]	leucine arylamidase	+	3.4.11.1
[Ref.: #44065]	lipase (C 14)	+/-
[Ref.: #44065]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #44065]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44065]	trypsin	+/-	3.4.21.4
[Ref.: #44065]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #44065]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44065]

Fatty acid	Percentage
C15:0-iso	61.9
C17:1-iso-ω7c	29
C17:0-iso	5.3
C17:0 anteiso	1.1
C15:1-iso_H / 13:0-3OH	0.7
C17:1-iso-I / anteiso-C17:1-B	0.6
C16:0	0.5
C16:0-iso	0.4
C16:1ω7c / 15:0-iso-2-OH	0.4

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #24140]	24284	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24140]	Sample type/isolated from	sandy river-bank soil covered with water and grown with the wild rice species Oryza longistaminata
[Ref.: #24140]	Host species	Oryza longistaminata
[Ref.: #24140]	Geographic location (country and/or sea, region)	North-East, Okavango river (17° 51' 59'' S 19° 54' 24'' E, 1065 m above sea level)
[Ref.: #24140]	Country	Namibia
[Ref.: #24140]	Country ISO 3 Code	NAM
[Ref.: #24140]	Continent	Africa
[Ref.: #24140]	Geographic location	-17.8664°/19.9067°

[Ref.: #44065]	Sample type/isolated from	sandy river-bank soil
[Ref.: #44065]	Sampling date	2010
[Ref.: #44065]	Geographic location (country and/or sea, region)	Okavango River
[Ref.: #44065]	Country	Namibia
[Ref.: #44065]	Country ISO 3 Code	NAM
[Ref.: #44065]	Continent	Africa
[Ref.: #44065]	Geographic location	-17.8664°/19.9067°
[Ref.: #44065]	Enrichment culture	soil solution equivalent (SSE)/Cmix medium
[Ref.: #44065]	Enrichment culture composition	pH 5.8 with MES
[Ref.: #44065]	Enrichment culture duration	6-8 weeks
[Ref.: #44065]	Enrichment culture temperature	15 ̊C
[Ref.: #44065]	Isolation/enrichment procedure	high-throughput cultivation experiments set up in sterile 96-well microtitre plates
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24140]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24140]	Occallatibacter riparius strain 277 16S ribosomal RNA gene, partial sequence	HQ995659	1463	ENA	1002689 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Occallatibacter riparius DSM 25168	GCA_025264625	complete	GenBank	1002689 tax ID	*
[Ref.: #66792]	Occallatibacter riparius strain DSM 25168	1002689.3	complete	PATRIC	1002689 tax ID	*

[Ref.: #24140]

GC-content

59.6 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Occallatibacter riparius DSM 25168 NCBI: GCA_025264625.1
[Ref.: #69480]	flagellated	no	90.797	no
[Ref.: #69480]	gram-positive	no	97.59	no
[Ref.: #69480]	anaerobic	no	96.563	no
[Ref.: #69480]	aerobic	yes	75.621	yes
[Ref.: #69480]	halophile	no	95.528	yes
[Ref.: #69480]	spore-forming	no	90.96	yes
[Ref.: #69480]	glucose-ferment	no	90.094	yes
[Ref.: #69480]	thermophile	no	94.805	yes
[Ref.: #69480]	glucose-util	yes	73.427	no
[Ref.: #69480]	motile	yes	54.761	yes

Availability in culture collections External links

[Ref.: #24140]

Culture collection no.

DSM 25168, LMG 26948

[Ref.: #90697]

SI-ID 379789

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae.	Foesel BU, Mayer S, Luckner M, Wanner G, Rohde M, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.000700	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24140

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 25168

#44065

Bärbel U. Foesel, Susanne Mayer, Manja Luckner, Gerhard Wanner, Manfred Rohde and Jörg Overmann: Occallatibacter riparius gen. nov., sp. nov. and Occallatibacter savannae sp. nov., acidobacteria isolated from Namibian soils, and emended description of the family Acidobacteriaceae. IJSEM 66: 219 - 229 2016 ( DOI 10.1099/ijsem.0.000700 , PubMed 26486590 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90697

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID379789.1 )

* These data were automatically processed and therefore are not curated

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Occallatibacter riparius DSM 25168

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Change proposal