Name: Bifidobacterium tissieri MRM_5.18
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132348

Type strain:

Species: Bifidobacterium tissieri

Strain Designation: MRM_5.18

Culture col. no.: DSM 100201, JCM 30798, MRM 5.18, KCTC 15590

Strain history: P. Mattarelli; Dept. of Agric. Sci., Bologna Univ., Italy; MRM_5.18.

NCBI tax ID(s): 1630162 (species)

SI-ID 401840

DSM 100201

Other strains from Bifidobacterium tissieri

B. tissieri MRM_9.02, DSM 100342, JCM 30803, ...

Section

Bifidobacterium tissieri MRM_5.18 is an anaerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from faeces of baby common marmosets .

colony-forming
Gram-positive
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Bifidobacteriales*
	Family	*Bifidobacteriaceae*
	Genus	*Bifidobacterium*
	Species	**Bifidobacterium tissieri**
	Full Scientific Name (LPSN)	Bifidobacterium tissieri corrig. Michelini et al. 2016

Synonym

Bifidobacterium tissierii

Information on morphological and physiological properties Morphology

[Ref.: #43839]	Gram stain	positive
[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #43839]	Cell shape	rod-shaped

[Ref.: #43839]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.628

[Ref.: #43839]	Type of hemolysis	gamma
[Ref.: #43839]	Colony size	1-2.5 mm
[Ref.: #43839]	Colony color	White
[Ref.: #43839]	Colony shape	circular
[Ref.: #43839]	Incubation period	2 days
[Ref.: #43839]	Cultivation medium used	TPY

Information on culture and growth conditions Culture and growth conditions

[Ref.: #43839]

Culture medium

TPY

[Ref.: #43839]

Culture medium growth

[Ref.: #24137]

Culture medium

BIFIDOBACTERIUM MEDIUM (DSMZ Medium 58)

[Ref.: #24137]

Culture medium growth

[Ref.: #24137]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24137]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24137]	growth	37 °C
[Ref.: #43839]	growth	25-40 °C
[Ref.: #43839]	optimum	35 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #24137]	Temperature range	mesophilic
[Ref.: #43839]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #43839]			optimum	6.5
[Ref.: #43839]			growth	5.5-7.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43839]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %98.365

[Ref.: #69481]	Ability of spore formation	no Confidence in %92
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43839]	2-dehydro-D-gluconate ChEBI	+	builds acid from
[Ref.: #43839]	5-dehydro-D-gluconate ChEBI	-	fermentation
[Ref.: #43839]	amygdalin ChEBI	-	fermentation
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	arbutin ChEBI	-	fermentation
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	cellobiose ChEBI	+	builds acid from
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-arabinose ChEBI	-	fermentation
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-arabitol ChEBI	-	fermentation
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-fructose ChEBI	+	builds acid from
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-fucose ChEBI	-	fermentation
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-galactose ChEBI	+	builds acid from
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-glucose ChEBI	+	builds acid from
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-mannitol ChEBI	+/-	builds acid from
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-mannose ChEBI	+	builds acid from
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-ribose ChEBI	-	fermentation
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-sorbitol ChEBI	-	fermentation
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-tagatose ChEBI	-	fermentation
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	D-xylose ChEBI	+	builds acid from
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	erythritol ChEBI	-	fermentation
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	galactitol ChEBI	-	fermentation
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	gentiobiose ChEBI	-	fermentation
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	gluconate ChEBI	-	fermentation
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	glycerol ChEBI	+	builds acid from
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	glycogen ChEBI	-	fermentation
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	inulin ChEBI	-	fermentation
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	L-arabinose ChEBI	+	builds acid from
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	L-arabitol ChEBI	-	fermentation
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	L-rhamnose ChEBI	+	builds acid from
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	L-sorbose ChEBI	-	fermentation
[Ref.: #68371]	L-sorbose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	L-xylose ChEBI	-	fermentation
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	lactose ChEBI	+	builds acid from
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	maltose ChEBI	+	builds acid from
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	melezitose ChEBI	+/-	builds acid from
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	melibiose ChEBI	-	fermentation
[Ref.: #68371]	melibiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	methyl alpha-D-mannoside ChEBI	-	fermentation
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	methyl beta-D-xylopyranoside ChEBI	-	fermentation
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	myo-inositol ChEBI	-	fermentation
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	N-acetylglucosamine ChEBI	+/-	builds acid from
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	raffinose ChEBI	+	builds acid from
[Ref.: #43839]	ribitol ChEBI	-	fermentation
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	salicin ChEBI	+	builds acid from
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	starch ChEBI	-	fermentation
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43839]	sucrose ChEBI	+	builds acid from
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	trehalose ChEBI	+	builds acid from
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	turanose ChEBI	-	fermentation
[Ref.: #68371]	turanose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43839]	xylitol ChEBI	-	fermentation
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #43839]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #43839]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #43839]	alpha-fucosidase	-	3.2.1.51
[Ref.: #43839]	alpha-mannosidase	-	3.2.1.24
[Ref.: #43839]	arginine dihydrolase	+	3.5.3.6
[Ref.: #43839]	beta-glucuronidase	-	3.2.1.31
[Ref.: #43839]	catalase	-	1.11.1.6
[Ref.: #43839]	cystine arylamidase	-	3.4.11.3
[Ref.: #43839]	cytochrome oxidase	-	1.9.3.1
[Ref.: #43839]	esterase Lipase (C 8)	-
[Ref.: #43839]	glycin arylamidase	+
[Ref.: #43839]	histidine arylamidase	+
[Ref.: #43839]	leucine arylamidase	+	3.4.11.1
[Ref.: #43839]	leucyl glycin arylamidase	+	3.4.11.1
[Ref.: #43839]	lipase (C 14)	-
[Ref.: #43839]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #43839]	phenylalanine arylamidase	+
[Ref.: #43839]	proline-arylamidase	+	3.4.11.5
[Ref.: #43839]	trypsin	-	3.4.21.4
[Ref.: #43839]	tyrosine arylamidase	+
[Ref.: #43839]	urease	+	3.5.1.5
[Ref.: #43839]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #24137]	14874	-	-	-	-	+	+	+	-	-	-	+	+	+	+	+	-	-	-	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+/-	-	-	-	+	+	-	-	-	-	-	-	-	+	+

	Pathway	Enzyme coverage	Annotated reactions
	Pathway annotation	Computationally determined by
[Ref.: #66794]	UDP-GlcNAc biosynthesis	100	3 of 3
[Ref.: #66794]	cardiolipin biosynthesis	100	7 of 7
[Ref.: #66794]	pentose phosphate pathway	100	11 of 11
[Ref.: #66794]	ribulose monophosphate pathway	100	2 of 2
[Ref.: #66794]	vitamin B1 metabolism	100	13 of 13
[Ref.: #66794]	formaldehyde oxidation	100	3 of 3
[Ref.: #66794]	coenzyme A metabolism	100	4 of 4
[Ref.: #66794]	CDP-diacylglycerol biosynthesis	100	2 of 2
[Ref.: #66794]	adipate degradation	100	2 of 2
[Ref.: #66794]	acetoin degradation	100	3 of 3
[Ref.: #66794]	anapleurotic synthesis of oxalacetate	100	1 of 1
[Ref.: #66794]	folate polyglutamylation	100	1 of 1
[Ref.: #66794]	starch degradation	100	10 of 10
[Ref.: #66794]	ppGpp biosynthesis	100	4 of 4
[Ref.: #66794]	threonine metabolism	90	9 of 10
[Ref.: #66794]	chorismate metabolism	88.89	8 of 9
[Ref.: #66794]	peptidoglycan biosynthesis	86.67	13 of 15
[Ref.: #66794]	palmitate biosynthesis	86.36	19 of 22
[Ref.: #66794]	photosynthesis	85.71	12 of 14
[Ref.: #66794]	cellulose degradation	80	4 of 5
[Ref.: #66794]	glycogen metabolism	80	4 of 5
[Ref.: #66794]	serine metabolism	77.78	7 of 9
[Ref.: #66794]	valine metabolism	77.78	7 of 9
[Ref.: #66794]	NAD metabolism	77.78	14 of 18
[Ref.: #66794]	phenylalanine metabolism	76.92	10 of 13
[Ref.: #66794]	acetate fermentation	75	3 of 4
[Ref.: #66794]	glycogen biosynthesis	75	3 of 4
[Ref.: #66794]	sulfopterin metabolism	75	3 of 4
[Ref.: #66794]	gluconeogenesis	75	6 of 8
[Ref.: #66794]	isoleucine metabolism	75	6 of 8
[Ref.: #66794]	C4 and CAM-carbon fixation	75	6 of 8
[Ref.: #66794]	glutamate and glutamine metabolism	75	21 of 28
[Ref.: #66794]	ketogluconate metabolism	75	6 of 8
[Ref.: #66794]	flavin biosynthesis	73.33	11 of 15
[Ref.: #66794]	pyrimidine metabolism	71.11	32 of 45
[Ref.: #66794]	Entner Doudoroff pathway	70	7 of 10
[Ref.: #66794]	purine metabolism	69.15	65 of 94
[Ref.: #66794]	alanine metabolism	68.97	20 of 29
[Ref.: #66794]	degradation of sugar alcohols	68.75	11 of 16
[Ref.: #66794]	L-lactaldehyde degradation	66.67	2 of 3
[Ref.: #66794]	glycolate and glyoxylate degradation	66.67	4 of 6
[Ref.: #66794]	aspartate and asparagine metabolism	66.67	6 of 9
[Ref.: #66794]	glycolysis	64.71	11 of 17
[Ref.: #66794]	heme metabolism	64.29	9 of 14
[Ref.: #66794]	proline metabolism	63.64	7 of 11
[Ref.: #66794]	d-xylose degradation	63.64	7 of 11
[Ref.: #66794]	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
[Ref.: #66794]	methionine metabolism	61.54	16 of 26
[Ref.: #66794]	metabolism of amino sugars and derivatives	60	3 of 5
[Ref.: #66794]	methylglyoxal degradation	60	3 of 5
[Ref.: #66794]	oxidative phosphorylation	59.34	54 of 91
[Ref.: #66794]	tetrahydrofolate metabolism	57.14	8 of 14
[Ref.: #66794]	degradation of pentoses	57.14	16 of 28
[Ref.: #66794]	degradation of sugar acids	56	14 of 25
[Ref.: #66794]	cysteine metabolism	55.56	10 of 18
[Ref.: #66794]	d-mannose degradation	55.56	5 of 9
[Ref.: #66794]	CO2 fixation in Crenarchaeota	55.56	5 of 9
[Ref.: #66794]	histidine metabolism	55.17	16 of 29
[Ref.: #66794]	metabolism of disaccharids	54.55	6 of 11
[Ref.: #66794]	leucine metabolism	53.85	7 of 13
[Ref.: #66794]	tryptophan metabolism	50	19 of 38
[Ref.: #66794]	cis-vaccenate biosynthesis	50	1 of 2
[Ref.: #66794]	dTDPLrhamnose biosynthesis	50	4 of 8
[Ref.: #66794]	citric acid cycle	50	7 of 14
[Ref.: #66794]	degradation of hexoses	50	9 of 18
[Ref.: #66794]	ethanol fermentation	50	1 of 2
[Ref.: #66794]	suberin monomers biosynthesis	50	1 of 2
[Ref.: #66794]	CMP-KDO biosynthesis	50	2 of 4
[Ref.: #66794]	arginine metabolism	50	12 of 24
[Ref.: #66794]	mannosylglycerate biosynthesis	50	1 of 2
[Ref.: #66794]	degradation of aromatic, nitrogen containing compounds	50	6 of 12
[Ref.: #66794]	toluene degradation	50	2 of 4
[Ref.: #66794]	glycine metabolism	50	5 of 10
[Ref.: #66794]	butanoate fermentation	50	2 of 4
[Ref.: #66794]	non-pathway related	47.37	18 of 38
[Ref.: #66794]	urea cycle	46.15	6 of 13
[Ref.: #66794]	vitamin B6 metabolism	45.45	5 of 11
[Ref.: #66794]	lysine metabolism	45.24	19 of 42
[Ref.: #66794]	lipid metabolism	45.16	14 of 31
[Ref.: #66794]	reductive acetyl coenzyme A pathway	42.86	3 of 7
[Ref.: #66794]	propanol degradation	42.86	3 of 7
[Ref.: #66794]	tyrosine metabolism	42.86	6 of 14
[Ref.: #66794]	propionate fermentation	40	4 of 10
[Ref.: #66794]	polyamine pathway	39.13	9 of 23
[Ref.: #66794]	isoprenoid biosynthesis	38.46	10 of 26
[Ref.: #66794]	sulfate reduction	38.46	5 of 13
[Ref.: #66794]	glutathione metabolism	35.71	5 of 14
[Ref.: #66794]	cyanate degradation	33.33	1 of 3
[Ref.: #66794]	acetyl CoA biosynthesis	33.33	1 of 3
[Ref.: #66794]	pantothenate biosynthesis	33.33	2 of 6
[Ref.: #66794]	selenocysteine biosynthesis	33.33	2 of 6
[Ref.: #66794]	sulfoquinovose degradation	33.33	1 of 3
[Ref.: #66794]	IAA biosynthesis	33.33	1 of 3
[Ref.: #66794]	lipid A biosynthesis	33.33	3 of 9
[Ref.: #66794]	octane oxidation	33.33	1 of 3
[Ref.: #66794]	nitrate assimilation	33.33	3 of 9
[Ref.: #66794]	molybdenum cofactor biosynthesis	33.33	3 of 9
[Ref.: #66794]	4-hydroxyphenylacetate degradation	30	3 of 10
[Ref.: #66794]	ubiquinone biosynthesis	28.57	2 of 7
[Ref.: #66794]	benzoyl-CoA degradation	28.57	2 of 7
[Ref.: #66794]	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
[Ref.: #66794]	phenol degradation	25	5 of 20
[Ref.: #66794]	lactate fermentation	25	1 of 4
[Ref.: #66794]	cyclohexanol degradation	25	1 of 4
[Ref.: #66794]	androgen and estrogen metabolism	25	4 of 16
[Ref.: #66794]	ascorbate metabolism	22.73	5 of 22
[Ref.: #66794]	4-hydroxymandelate degradation	22.22	2 of 9
		Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24137]	Sample type/isolated from	faeces of baby common marmosets (Callithrix jacchus L.)
[Ref.: #24137]	Host species	Callithrix jacchus
[Ref.: #24137]	Geographic location (country and/or sea, region)	Verona
[Ref.: #24137]	Country	Italy
[Ref.: #24137]	Country ISO 3 Code	ITA
[Ref.: #24137]	Continent	Europe

[Ref.: #43839]	Sample type/isolated from	The feaces of common marmosets (Callithrix jacchus L.)

[Ref.: #67770]	Sample type/isolated from	Feces of a common marmosets
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Primates
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KP718951 (>99% sequence identity) for Bifidobacterium tissieri subclade from Microbeatlas

Aquatic Samples	877
Soil Samples	398
Animal Samples	39956
Plant Samples	184
Total Samples	41415

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24137]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24137]	Bifidobacterium tissieri strain MRM_5.18 16S ribosomal RNA gene, partial sequence	KP718951	1509	ENA	1630162 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Bifidobacterium tissieri DSM 100201	GCA_002259645	contig	GenBank	1630162 tax ID	*
[Ref.: #66792]	Bifidobacterium tissieri strain DSM 100201	1630162.3	wgs	PATRIC	1630162 tax ID	*
[Ref.: #66792]	Bifidobacterium tissieri DSM 100201	2791355236	draft	JGI IMG/M	1630162 tax ID	*

[Ref.: #24137]

GC-content

63.7 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Bifidobacterium tissieri strain DSM 100201 PATRIC: 1630162.7
[Ref.: #69481]	spore-forming	no	92	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Bifidobacterium tissieri strain DSM 100201 PATRIC: 1630162.3
[Ref.: #69480]	motile	no	93.919	no
[Ref.: #69480]	gram-positive	yes	91.515	no
[Ref.: #69480]	anaerobic	yes	89.337	yes
[Ref.: #69480]	aerobic	no	93.386	yes
[Ref.: #69480]	halophile	no	72.269	no
[Ref.: #69480]	spore-forming	no	93.805	no
[Ref.: #69480]	glucose-util	yes	90.467	no
[Ref.: #69480]	flagellated	no	95.391	no
[Ref.: #69480]	thermophile	no	97.896	yes
[Ref.: #69480]	glucose-ferment	yes	83.368	no

Availability in culture collections External links

[Ref.: #24137]

Culture collection no.

DSM 100201, JCM 30798, MRM 5.18, KCTC 15590

[Ref.: #90694]

SI-ID 401840

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of Bifidobacterium species in feaces of the Egyptian fruit bat: Description of B. vespertilionis sp. nov. and B. rousetti sp. nov.	Modesto M, Satti M, Watanabe K, Puglisi E, Morelli L, Huang CH, Liou JS, Miyashita M, Tamura T, Saito S, Mori K, Huang L, Sciavilla P, Sandri C, Spiezio C, Vitali F, Cavalieri D, Perpetuini G, Tofalo R, Bonetti A, Arita M, Mattarelli P	Syst Appl Microbiol	10.1016/j.syapm.2019.126017	2019	*
Phylogeny	Bifidobacterium primatium sp. nov., Bifidobacterium scaligerum sp. nov., Bifidobacterium felsineum sp. nov. and Bifidobacterium simiarum sp. nov.: Four novel taxa isolated from the faeces of the cotton top tamarin (Saguinus oedipus) and the emperor tamarin (Saguinus imperator).	Modesto M, Puglisi E, Bonetti A, Michelini S, Spiezio C, Sandri C, Sgorbati B, Morelli L, Mattarelli P	Syst Appl Microbiol	10.1016/j.syapm.2018.07.005	2018	*
Phylogeny	Bifidobacterium catulorum sp. nov., a novel taxon from the faeces of the baby common marmoset (Callithrix jacchus).	Modesto M, Michelini S, Oki K, Biavati B, Watanabe K, Mattarelli P	Int J Syst Evol Microbiol	10.1099/ijsem.0.002545	2018	*
Phylogeny	Bifidobacterium myosotis sp. nov., Bifidobacterium tissieri sp. nov. and Bifidobacterium hapali sp. nov., isolated from faeces of baby common marmosets (Callithrix jacchus L.).	Michelini S, Oki K, Yanokura E, Shimakawa Y, Modesto M, Mattarelli P, Biavati B, Watanabe K	Int J Syst Evol Microbiol	10.1099/ijsem.0.000708	2015	*
Phylogeny	Bifidobacterium vansinderenii sp. nov., isolated from faeces of emperor tamarin (Saguinus imperator).	Duranti S, Mangifesta M, Lugli GA, Turroni F, Anzalone R, Milani C, Mancabelli L, Ossiprandi MC, Ventura M	Int J Syst Evol Microbiol	10.1099/ijsem.0.002243	2017	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24137

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100201

#43839

Samanta Michelini, Kaihei Oki, Emiko Yanokura, Yasuhisa Shimakawa, Monica Modesto, Paola Mattarelli, Bruno Biavati, Koichi Watanabe: Bifidobacterium myosotis sp. nov., Bifidobacterium tissieri sp. nov. and Bifidobacterium hapali sp. nov., isolated from faeces of baby common marmosets (Callithrix jacchus L.). IJSEM 66: 255 - 265 2016 ( DOI 10.1099/ijsem.0.000708 , PubMed 26515885 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66794

Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90694

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401840.1 )

* These data were automatically processed and therefore are not curated

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Bifidobacterium tissieri strain DSM 100201

Bifidobacterium tissieri strain DSM 100201

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