Name: Microlunatus endophyticus S3Af-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132342

Type strain:

Species: Microlunatus endophyticus

Strain Designation: S3Af-1

Culture col. no.: DSM 100019, CGMCC 4.7306, JCM 31774

Strain history: CGMCC 4.7306 <-- L. Tuo; Inst. of Med. Biotechnol., Chin. Acad. Med. Sci. & Peking Union Med. Coll., China; S3Af-1.

NCBI tax ID(s): 1716077 (species)

Section

Microlunatus endophyticus S3Af-1 is an aerobe, Gram-negative, coccus-shaped bacterium that forms circular colonies and was isolated from surface-sterilized bark of Bruguiera sexangula.

coccus-shaped
colony-forming
Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Propionibacteriales*
	Family	*Propionibacteriaceae*
	Genus	*Microlunatus*
	Species	**Microlunatus endophyticus**
	Full Scientific Name (PNU)	Microlunatus endophyticus Tuo et al. 2016

Information on morphological and physiological properties Morphology

[Ref.: #44060]	Gram stain	negative
[Ref.: #44060]	Cell length	0.5-0.7 µm
[Ref.: #44060]	Cell width	0.5-0.7 µm
[Ref.: #44060]	Cell shape	coccus-shaped
[Ref.: #44060]	Motility	no

[Ref.: #69480]	Gram stain	positive Confidence in %100

[Ref.: #69480]	Motility	no Confidence in %91.699

[Ref.: #44060]	Colony color	yellowish white
[Ref.: #44060]	Colony shape	circular
[Ref.: #44060]	Incubation period	5 days
[Ref.: #44060]	Cultivation medium used	ISP 2 agar

Information on culture and growth conditions Culture and growth conditions

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Culture medium

ISP 2 agar

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Culture medium growth

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Culture medium

ISP 3 agar

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Culture medium growth

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Culture medium

Nutrient agar (NA)

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Culture medium growth

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Culture medium

Reasoner's 2A agar (R2A)

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Culture medium growth

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Culture medium

Trypticase Soy Agar (TSA)

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Culture medium growth

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Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

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Culture medium composition

expand / minimize

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Culture medium

ISP 4 agar

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Culture medium growth

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Culture medium

ISP 5 agar

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Culture medium growth

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Culture medium

ISP 7 agar

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Culture medium growth

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Culture medium

LB (Luria-Bertani) MEDIUM

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Culture medium growth

	Kind of temperature		Temperature
[Ref.: #24131]		growth	28 °C
[Ref.: #44060]		growth	20-42 °C
[Ref.: #44060]		optimum	28-30 °C
[Ref.: #44060]	no	growth	15 °C
[Ref.: #44060]	no	growth	50 °C
[Ref.: #67770]		growth	28 °C

[Ref.: #24131]	Temperature range	mesophilic
[Ref.: #44060]	Temperature range	mesophilic
[Ref.: #44060]	Temperature range	psychrophilic
[Ref.: #44060]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	mesophilic

	Kind of pH		pH
[Ref.: #44060]		optimum	7
[Ref.: #44060]		growth	5.0-9.0
[Ref.: #44060]	no	growth	4
[Ref.: #44060]	no	growth	10

Information on physiology and metabolism Physiology and metabolism

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Oxygen tolerance

aerobe

[Ref.: #44060]	Type of spore	spore
[Ref.: #44060]	Ability of spore formation	no
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.814

[Ref.: #44060]

Halophily / tolerance level

non-halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #44060]	NaCl		growth	0-2	%(w/v)
[Ref.: #44060]	NaCl		optimum	0	%(w/v)
[Ref.: #44060]	NaCl	no	growth	3	%(w/v)

[Ref.: #44060]	Observation	substrate mycelium
[Ref.: #44060]	Observation	primary mycelium
[Ref.: #67770]	Observation	quinones: MK-9(H₆), MK-9(H₄)

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #44060]	(S)-lactate ChEBI	+	oxidation
[Ref.: #44060]	1 % sodium lactate	-	growth
[Ref.: #44060]	2-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #44060]	2-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #44060]	2-oxoglutarate ChEBI	+	oxidation
[Ref.: #44060]	3-hydroxybutyrate ChEBI	+	oxidation
[Ref.: #44060]	3-O-methyl-D-glucose ChEBI	+	oxidation
[Ref.: #44060]	4-hydroxyphenylacetic acid ChEBI	+	oxidation
[Ref.: #44060]	5-dehydro-D-gluconate ChEBI	-	builds acid from
[Ref.: #44060]	acetate ChEBI	+	oxidation
[Ref.: #44060]	acetoacetate ChEBI	-	oxidation
[Ref.: #44060]	alpha-D-glucose ChEBI	+	oxidation
[Ref.: #44060]	alpha-lactose ChEBI	+	oxidation
[Ref.: #44060]	amygdalin ChEBI	+	builds acid from
[Ref.: #44060]	arbutin ChEBI	+	builds acid from
[Ref.: #44060]	aztreonam ChEBI	-	growth
[Ref.: #44060]	bromosuccinate ChEBI	+	oxidation
[Ref.: #44060]	casein	+/-	hydrolysis
[Ref.: #44060]	cellobiose ChEBI	+	builds acid from
[Ref.: #44060]	cellobiose ChEBI	+	oxidation
[Ref.: #44060]	citrate ChEBI	+	oxidation
[Ref.: #44060]	D-alanine ChEBI	+	oxidation
[Ref.: #44060]	D-arabinose ChEBI	+	builds acid from
[Ref.: #44060]	D-arabitol ChEBI	-	builds acid from
[Ref.: #44060]	D-arabitol ChEBI	+	oxidation
[Ref.: #44060]	D-aspartate ChEBI	+	oxidation
[Ref.: #44060]	D-fructose ChEBI	-	builds acid from
[Ref.: #44060]	D-fructose ChEBI	+	oxidation
[Ref.: #44060]	D-fructose 6-phosphate ChEBI	+	oxidation
[Ref.: #44060]	D-fucose ChEBI	-	builds acid from
[Ref.: #44060]	D-fucose ChEBI	+	oxidation
[Ref.: #44060]	D-galactose ChEBI	+	builds acid from
[Ref.: #44060]	D-galactose ChEBI	+	oxidation
[Ref.: #44060]	D-galacturonic acid ChEBI	+	oxidation
[Ref.: #44060]	D-gluconate ChEBI	+	oxidation
[Ref.: #44060]	D-glucose ChEBI	+/-	builds acid from
[Ref.: #44060]	D-glucose 6-phosphate ChEBI	+	oxidation
[Ref.: #44060]	D-glucuronate ChEBI	+	oxidation
[Ref.: #44060]	D-malate ChEBI	+	oxidation
[Ref.: #44060]	D-mannitol ChEBI	+	oxidation
[Ref.: #44060]	D-mannose ChEBI	+	oxidation
[Ref.: #44060]	D-mannose ChEBI	+/-	builds acid from
[Ref.: #44060]	D-ribose ChEBI	+	builds acid from
[Ref.: #44060]	D-saccharate ChEBI	+	oxidation
[Ref.: #44060]	D-serine ChEBI	-	oxidation
[Ref.: #44060]	D-sorbitol ChEBI	+	oxidation
[Ref.: #44060]	D-tagatose ChEBI	-	builds acid from
[Ref.: #44060]	D-xylose ChEBI	-	builds acid from
[Ref.: #44060]	D-xylose ChEBI	+	builds acid from
[Ref.: #44060]	dextrin ChEBI	+	oxidation
[Ref.: #44060]	erythritol ChEBI	-	builds acid from
[Ref.: #44060]	esculin ChEBI	+	builds acid from
[Ref.: #44060]	formate ChEBI	+	oxidation
[Ref.: #44060]	fusidate ChEBI	-	growth
[Ref.: #44060]	galactarate ChEBI	+	oxidation
[Ref.: #44060]	galactitol ChEBI	-	builds acid from
[Ref.: #44060]	gamma-aminobutyric acid ChEBI	+	oxidation
[Ref.: #44060]	gelatin ChEBI	-	hydrolysis
[Ref.: #44060]	gelatin ChEBI	+	oxidation
[Ref.: #44060]	gentiobiose ChEBI	+	builds acid from
[Ref.: #44060]	gentiobiose ChEBI	+	oxidation
[Ref.: #44060]	gluconate ChEBI	-	builds acid from
[Ref.: #44060]	glucuronamide ChEBI	+	oxidation
[Ref.: #44060]	glycerol ChEBI	+	oxidation
[Ref.: #44060]	glycine-proline ChEBI	+	oxidation
[Ref.: #44060]	glycogen ChEBI	-	builds acid from
[Ref.: #44060]	glycol ChEBI	-	builds acid from
[Ref.: #44060]	guanidinium chloride ChEBI	-	growth
[Ref.: #44060]	inosine ChEBI	+	oxidation
[Ref.: #44060]	inulin ChEBI	-	builds acid from
[Ref.: #44060]	L-arabinose ChEBI	+	builds acid from
[Ref.: #44060]	L-arabitol ChEBI	-	builds acid from
[Ref.: #44060]	L-arginine ChEBI	+	oxidation
[Ref.: #44060]	L-aspartate ChEBI	+	oxidation
[Ref.: #44060]	L-fucose ChEBI	-	builds acid from
[Ref.: #44060]	L-fucose ChEBI	+	oxidation
[Ref.: #44060]	L-glutamate ChEBI	+	oxidation
[Ref.: #44060]	L-histidine ChEBI	+	oxidation
[Ref.: #44060]	L-malate ChEBI	+	oxidation
[Ref.: #44060]	L-pyroglutamic acid ChEBI	+	oxidation
[Ref.: #44060]	L-rhamnose ChEBI	-	builds acid from
[Ref.: #44060]	L-rhamnose ChEBI	+	oxidation
[Ref.: #44060]	L-serine ChEBI	+	oxidation
[Ref.: #44060]	L-sorbose ChEBI	-	builds acid from
[Ref.: #44060]	L-xylose ChEBI	-	builds acid from
[Ref.: #44060]	lactose ChEBI	+/-	builds acid from
[Ref.: #44060]	lincomycin ChEBI	-	growth
[Ref.: #44060]	lithium chloride ChEBI	-	growth
[Ref.: #44060]	maltose ChEBI	+	builds acid from
[Ref.: #44060]	maltose ChEBI	+	oxidation
[Ref.: #44060]	mannitol ChEBI	-	builds acid from
[Ref.: #44060]	melezitose ChEBI	+	builds acid from
[Ref.: #44060]	melibiose ChEBI	+	builds acid from
[Ref.: #44060]	melibiose ChEBI	+	oxidation
[Ref.: #44060]	methyl (R)-lactate ChEBI	+	oxidation
[Ref.: #44060]	methyl alpha-D-glucopyranoside ChEBI	+	builds acid from
[Ref.: #44060]	methyl alpha-D-mannoside ChEBI	+	builds acid from
[Ref.: #44060]	methyl beta-D-glucopyranoside ChEBI	+	oxidation
[Ref.: #44060]	methyl beta-D-xylopyranoside ChEBI	+	builds acid from
[Ref.: #44060]	methyl pyruvate ChEBI	+	oxidation
[Ref.: #44060]	minocycline ChEBI	-	growth
[Ref.: #44060]	myo-inositol ChEBI	-	builds acid from
[Ref.: #44060]	myo-inositol ChEBI	+	oxidation
[Ref.: #44060]	N-acetyl-D-mannosamine ChEBI	+	oxidation
[Ref.: #44060]	N-acetylgalactosamine ChEBI	+	oxidation
[Ref.: #44060]	N-acetylglucosamine ChEBI	+	builds acid from
[Ref.: #44060]	N-acetylglucosamine ChEBI	+	oxidation
[Ref.: #44060]	n-acetylneuraminate ChEBI	+	oxidation
[Ref.: #44060]	nalidixic acid ChEBI	+	growth
[Ref.: #44060]	niaproof ChEBI	-	growth
[Ref.: #44060]	nitrate ChEBI	-	reduction
[Ref.: #44060]	pectin ChEBI	+	oxidation
[Ref.: #44060]	potassium tellurite ChEBI	+	growth
[Ref.: #44060]	propionate ChEBI	-	oxidation
[Ref.: #44060]	quinate ChEBI	+	oxidation
[Ref.: #44060]	raffinose ChEBI	+	builds acid from
[Ref.: #44060]	raffinose ChEBI	+	oxidation
[Ref.: #44060]	ribitol ChEBI	-	builds acid from
[Ref.: #44060]	rifamycin sv ChEBI	+	growth
[Ref.: #44060]	salicin ChEBI	+	builds acid from
[Ref.: #44060]	salicin ChEBI	+	oxidation
[Ref.: #44060]	sodium bromate ChEBI	-	growth
[Ref.: #44060]	sodium butyrate ChEBI	-	growth
[Ref.: #44060]	sorbitol ChEBI	-	builds acid from
[Ref.: #44060]	stachyose ChEBI	+	oxidation
[Ref.: #44060]	starch ChEBI	+	hydrolysis
[Ref.: #44060]	starch ChEBI	+/-	builds acid from
[Ref.: #44060]	sucrose ChEBI	+	builds acid from
[Ref.: #44060]	sucrose ChEBI	+	oxidation
[Ref.: #44060]	tetrazolium blue ChEBI	-	growth
[Ref.: #44060]	tetrazolium violet ChEBI	-	growth
[Ref.: #44060]	trehalose ChEBI	+	builds acid from
[Ref.: #44060]	trehalose ChEBI	+	oxidation
[Ref.: #44060]	troleandomycin ChEBI	-	growth
[Ref.: #44060]	turanose ChEBI	+	builds acid from
[Ref.: #44060]	turanose ChEBI	+	oxidation
[Ref.: #44060]	tween 20 ChEBI	+	hydrolysis
[Ref.: #44060]	tween 40 ChEBI	+	hydrolysis
[Ref.: #44060]	tween 40 ChEBI	+	oxidation
[Ref.: #44060]	tween 80 ChEBI	-	hydrolysis
[Ref.: #44060]	vancomycin ChEBI	-	growth
[Ref.: #44060]	xylitol ChEBI	-	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #44060]		hydrogen sulfide ChEBI

	Enzyme	Enzyme activity	EC number
[Ref.: #44060]	acid phosphatase	+	3.1.3.2
[Ref.: #44060]	alkaline phosphatase	-	3.1.3.1
[Ref.: #44060]	alpha-chymotrypsin	+	3.4.21.1
[Ref.: #44060]	alpha-fucosidase	+	3.2.1.51
[Ref.: #44060]	alpha-galactosidase	+	3.2.1.22
[Ref.: #44060]	alpha-glucosidase	+	3.2.1.20
[Ref.: #44060]	alpha-mannosidase	+	3.2.1.24
[Ref.: #44060]	beta-galactosidase	+	3.2.1.23
[Ref.: #44060]	beta-glucosidase	+	3.2.1.21
[Ref.: #44060]	beta-glucuronidase	-	3.2.1.31
[Ref.: #44060]	catalase	+	1.11.1.6
[Ref.: #44060]	cystine arylamidase	+	3.4.11.3
[Ref.: #44060]	cytochrome oxidase	+	1.9.3.1
[Ref.: #44060]	esterase (C 4)	+
[Ref.: #44060]	esterase Lipase (C 8)	+
[Ref.: #44060]	leucine arylamidase	+	3.4.11.1
[Ref.: #44060]	lipase (C 14)	-
[Ref.: #44060]	N-acetyl-beta-glucosaminidase	+	3.2.1.52
[Ref.: #44060]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #44060]	trypsin	-	3.4.21.4
[Ref.: #44060]	urease	-	3.5.1.5
[Ref.: #44060]	valine arylamidase	+
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24131]	Sample type/isolated from	surface-sterilized bark of Bruguiera sexangula
[Ref.: #24131]	Host species	Bruguiera sexangula
[Ref.: #24131]	Geographic location (country and/or sea, region)	Hainan, Dongzhaigang National Nature Reserve (19° 56' 59'' N 110° 34' 32'' E)
[Ref.: #24131]	Country	China
[Ref.: #24131]	Country ISO 3 Code	CHN
[Ref.: #24131]	Continent	Asia
[Ref.: #24131]	Geographic location	19.9497°/110.5760°

[Ref.: #44060]	Sample type/isolated from	surface-sterilized bark of Bruguiera sexangula
[Ref.: #44060]	Geographic location (country and/or sea, region)	Dongzhaigang National Nature Reserve, Hainan
[Ref.: #44060]	Country	China
[Ref.: #44060]	Country ISO 3 Code	CHN
[Ref.: #44060]	Continent	Asia
[Ref.: #44060]	Geographic location	19.9497°/110.5760°
[Ref.: #44060]	Enrichment culture	chitin agar
[Ref.: #44060]	Enrichment culture composition	containing, per litre distilled water: 2.0 g chitin, 0.7 g K2HPO4 , 0.3 g KH2PO4 , 0.5 g MgSO4 . 7H2O, 0.01 g FeSO4 . 7H2O, 0.001 g ZnSO4 , 0.001 g MnCl2 and 15.0 g agar, pH 7.2
[Ref.: #44060]	Enrichment culture duration	28 days
[Ref.: #44060]	Enrichment culture temperature	28 ̊C
[Ref.: #44060]	Isolation/enrichment procedure	The plant samples of Bruguiera sexangula were washed in running tap water to remove adherent epiphytes and surface-sterilized according to the ve-step sterilization procedure (Qin et al., 2008). After drying under a hood, the surface-sterilized bark was ground into powder by using a micromill and distributed on different media plates.

[Ref.: #67770]	Sample type/isolated from	Surface-sterilized bark of Bruguiera sexangula from Dongzhaigang National Nature Reserve
[Ref.: #67770]	Host species	Bruguiera sexangula
[Ref.: #67770]	Geographic location (country and/or sea, region)	Hainan
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site	#Plant	#Sterilized plant part
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Bark

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KT749873 (>99% sequence identity) for Microlunatus endophyticus from Microbeatlas

Aquatic Samples	31
Soil Samples	595
Animal Samples	106
Plant Samples	26
Total Samples	758

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24131]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24131]	Microlunatus endophyticus 16S ribosomal RNA gene, partial sequence	KT749873	1478	ENA	1716077 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Microlunatus endophyticus CGMCC 4.7306	GCA_014646195	contig	GenBank	1716077 tax ID	*
[Ref.: #66792]	Microlunatus endophyticus strain CGMCC 4.7306	1716077.3	wgs	PATRIC	1716077 tax ID	*

[Ref.: #24131]

GC-content

67.1 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Microlunatus endophyticus strain CGMCC 4.7306 PATRIC: 1716077.3
[Ref.: #69480]	gram-positive	yes	100	no
[Ref.: #69480]	anaerobic	no	95.109	no
[Ref.: #69480]	spore-forming	no	99.814	yes
[Ref.: #69480]	thermophile	no	99.958	no
[Ref.: #69480]	motile	no	91.699	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Microlunatus endophyticus strain CGMCC 4.7306 PATRIC: 1716077.3
[Ref.: #69481]	spore-forming	no	57	no

Availability in culture collections External links

[Ref.: #24131]

Culture collection no.

DSM 100019, CGMCC 4.7306, JCM 31774

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Microlunatus elymi sp. nov., a novel actinobacterium isolated from rhizospheric soil of the wild plant Elymus tsukushiensis.	Son JS, Lee SY, Hwang YJ, Shin JH, Ghim SY	Int J Syst Evol Microbiol	10.1099/ijsem.0.004428	2020	*
Phylogeny	Microlunatus endophyticus sp. nov., an endophytic actinobacterium isolated from bark of Bruguiera sexangula.	Tuo L, Li J, Liu SW, Liu Y, Hu L, Chen L, Jiang MG, Sun CH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000779	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24131

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 100019

#44060

Li Tuo, Jing Li, Shao-Wei Liu, Yang Liu, Lin Hu, Li Chen, Ming-Guo Jiang and Cheng-Hang Sun: Microlunatus endophyticus sp. nov., an endophytic actinobacterium isolated from bark of Bruguiera sexangula. IJSEM 66: 481 - 486 2016 ( DOI 10.1099/ijsem.0.000779 , PubMed 26585772 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Microlunatus endophyticus strain CGMCC 4.7306

Microlunatus endophyticus strain CGMCC 4.7306

Change proposal

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