Name: Umezawaea endophytica YIM2047X
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132335

Type strain:

Species: Umezawaea endophytica

Strain Designation: YIM2047X

Culture col. no.: DSM 103496, CPCC 204132, KCTC 39538, YIM 2047X, JCM 30637

Strain history: <- Wenjun Li

NCBI tax ID(s): 1654476 (species)

SI-ID 398136

DSM 103496

Other strains from Umezawaea endophytica

U. endophytica JCM 30636

Section

Umezawaea endophytica YIM2047X is an aerobe, mesophilic bacterium that was isolated from From plant .

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Umezawaea*
	Species	**Umezawaea endophytica**
	Full Scientific Name (LPSN)	Umezawaea endophytica Chu et al. 2016

Information on morphological and physiological properties Morphology

Multimedia content

[Ref.: #24124]

Caption:

Medium 535 28°C

[Ref.: #24124]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24124]

Culture medium

N-Z-AMINE-MEDIUM (DSMZ Medium 554)

[Ref.: #24124]

Culture medium growth

[Ref.: #24124]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24124]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #24124]	growth	28 °C
[Ref.: #67770]	growth	28 °C
[Ref.: #67771]	growth	28 °C

[Ref.: #24124]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #67770]

Observation

quinones: MK-9(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67771]	Sample type/isolated from	From plant (tobacco root samples)
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #24124]	Sample type/isolated from	tabaco root samples
[Ref.: #24124]	Geographic location (country and/or sea, region)	Yunnan, Shiling county, Impressive Tobacco farm
[Ref.: #24124]	Country	China
[Ref.: #24124]	Country ISO 3 Code	CHN
[Ref.: #24124]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tobacco root from Shiling County
[Ref.: #67770]	Geographic location (country and/or sea, region)	Yunnan Province, south-west China
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24124]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24124]	Umezawaea endophytica strain YIM 2047X 16S ribosomal RNA gene, partial sequence	KP984506	1510	ENA	1654476 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Umezawaea endophytica DSM 103496	GCA_025061645	scaffold	GenBank	1654476 tax ID	*

[Ref.: #24124]

GC-content

73.4 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Umezawaea endophytica DSM 103496 NCBI: GCA_025061645.1
[Ref.: #69480]	motile	no	92.075	no
[Ref.: #69480]	flagellated	no	97.108	no
[Ref.: #69480]	gram-positive	yes	85.796	no
[Ref.: #69480]	anaerobic	no	99.419	yes
[Ref.: #69480]	aerobic	yes	92.332	yes
[Ref.: #69480]	halophile	no	90.663	no
[Ref.: #69480]	spore-forming	yes	94.07	no
[Ref.: #69480]	glucose-ferment	no	90.556	no
[Ref.: #69480]	thermophile	no	99.352	no
[Ref.: #69480]	glucose-util	yes	88.786	no

Availability in culture collections External links

[Ref.: #24124]

Culture collection no.

DSM 103496, CPCC 204132, KCTC 39538, YIM 2047X, JCM 30637

[Ref.: #90682]

SI-ID 398136

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Solihabitans fulvus gen. nov., sp. nov., a member of the family Pseudonocardiaceae isolated from soil.	Jin CZ, Jin L, Liu MJ, Lee JM, Park DJ, Kim CJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.005110	2022	*
Phylogeny	Umezawaea endophytica sp. nov., isolated from tobacco root samples.	Chu X, Liu BB, Gao R, Zhang ZY, Duan YQ, Nimaichand S, Chen W, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-015-0522-3	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24124

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103496

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90682

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID398136.1 )

* These data were automatically processed and therefore are not curated

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Umezawaea endophytica DSM 103496

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