Name: Thermocrinis jamiesonii DSM 27162
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132294

Type strain:

Species: Thermocrinis jamiesonii

Culture col. no.: DSM 27162, JCM 19133, GBS 1

Strain history: J. Dodsworth and B. P. Hedlund GBS1.

NCBI tax ID(s): 1302351 (species)

SI-ID 402933

DSM 27162

Section

Thermocrinis jamiesonii DSM 27162 is a hyperthermophilic bacterium that was isolated from water column of a geothermal spring.

hyperthermophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Aquificaceae*
	Genus	*Thermocrinis*
	Species	**Thermocrinis jamiesonii**
	Full Scientific Name (LPSN)	Thermocrinis jamiesonii Dodsworth et al. 2015

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24083]

Culture medium

GBS SALTS MODIFIED FOR THERMICRINIS JAMIESONII (DSMZ Medium 1486)

[Ref.: #24083]

Culture medium growth

[Ref.: #24083]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24083]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24083]			growth	80 °C
[Ref.: #67770]			growth	80 °C

[Ref.: #24083]	Temperature range	hyperthermophilic
[Ref.: #67770]	Temperature range	hyperthermophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24083]	Sample type/isolated from	water column of a geothermal spring
[Ref.: #24083]	Geographic location (country and/or sea, region)	Nevada, near Gerlach, Great Boiling Spring, north side of the source pool, site A
[Ref.: #24083]	Country	USA
[Ref.: #24083]	Country ISO 3 Code	USA
[Ref.: #24083]	Continent	North America

[Ref.: #67770]	Sample type/isolated from	Water column of Great Boiling Spring
[Ref.: #67770]	Geographic location (country and/or sea, region)	NV
[Ref.: #67770]	Country	USA
[Ref.: #67770]	Country ISO 3 Code	USA
[Ref.: #67770]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24083]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Thermocrinis jamiesonii GBS1	GCA_000702425	scaffold	GenBank	1302351 tax ID

[Ref.: #24083]	GC-content	41.3 mol%	sequence analysis
[Ref.: #67770]	GC-content	41.3 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermocrinis sp. GBS GBS NCBI: GCA_000702425.1
[Ref.: #69480]	motile	yes	81.795	no
[Ref.: #69480]	flagellated	no	92.561	no
[Ref.: #69480]	gram-positive	no	99.556	no
[Ref.: #69480]	anaerobic	no	57.255	no
[Ref.: #69480]	halophile	no	83.381	no
[Ref.: #69480]	spore-forming	no	96.952	no
[Ref.: #69480]	thermophile	yes	100	no
[Ref.: #69480]	glucose-util	yes	64.775	no
[Ref.: #69480]	aerobic	no	95.01	no
[Ref.: #69480]	glucose-ferment	no	83.817	no

Availability in culture collections External links

[Ref.: #24083]

Culture collection no.

DSM 27162, JCM 19133, GBS 1

[Ref.: #90641]

SI-ID 402933

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermocrinis jamiesonii sp. nov., a thiosulfate-oxidizing, autotropic thermophile isolated from a geothermal spring.	Dodsworth JA, Ong JC, Williams AJ, Dohnalkova AC, Hedlund BP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000647	2015	*
Genetics	High-Quality Draft Genome Sequence of Thermocrinis jamiesonii GBS1T Isolated from Great Boiling Spring, Nevada.	Ganji R, Murugapiran SK, Ong JC, Manoharan N, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Duffy K, Shapiro N, Markowitz V, Ivanova N, Kyrpides N, Woyke T, Dodsworth JA, Hedlund BP	Genome Announc	10.1128/genomeA.01112-16	2016	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24083

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27162

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90641

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID402933.1 )

* These data were automatically processed and therefore are not curated

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