Name: Undibacterium aquatile THG-DN7.3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132285

Type strain:

Species: Undibacterium aquatile

Strain Designation: THG-DN7.3

Culture col. no.: DSM 103791, CCTCC AB 2015119, KCTC 42243, JCM 30323

Strain history: T.-H. Yi; Kyung Hee Univ., South Korea; THG-DN7.3.

NCBI tax ID(s): 1537398 (species)

SI-ID 396624

DSM 103791

Section

Undibacterium aquatile THG-DN7.3 is a mesophilic, Gram-negative bacterium that was isolated from waterfall sample.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Betaproteobacteria*
	Order	*Burkholderiales*
	Family	*Oxalobacteraceae*
	Genus	*Undibacterium*
	Species	**Undibacterium aquatile**
	Full Scientific Name (LPSN)	Undibacterium aquatile Du et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.997

[Ref.: #69480]	Motility	yes Confidence in %97.267

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24074]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24074]

Culture medium growth

[Ref.: #24074]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24074]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24074]			growth	28 °C
[Ref.: #67770]			growth	28 °C

[Ref.: #24074]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #24074]	24499	+	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24074]	Sample type/isolated from	waterfall sample
[Ref.: #24074]	Geographic location (country and/or sea, region)	waterfall of Gyeryongsan mountain, Daejeon
[Ref.: #24074]	Country	Republic of Korea
[Ref.: #24074]	Country ISO 3 Code	KOR
[Ref.: #24074]	Continent	Asia
[Ref.: #24074]	Geographic location	36.3878°/127.2960°

[Ref.: #67770]	Sample type/isolated from	Waterfall
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24074]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24074]	Undibacterium aquatile strain THG-DN7.3 16S ribosomal RNA gene, partial sequence	KM035973.3	1443	ENA	1537398 tax ID
[Ref.: #67770]	Undibacterium aquatile strain THG-DN7.3 16S ribosomal RNA gene, partial sequence	KM035973	1443	ENA	1537398 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Undibacterium aquatile CCTCC AB 2015119	GCA_014699135	scaffold	GenBank	1537398 tax ID	*
[Ref.: #66792]	Undibacterium aquatile strain CCTCC AB 2015119	1537398.3	wgs	PATRIC	1537398 tax ID	*
[Ref.: #66792]	Undibacterium aquatile CCTCC AB 2015119	2920390971	draft	JGI IMG/M	1537398 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Undibacterium aquatile CCTCC AB 2015119 NCBI: GCA_014699135.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Undibacterium aquatile CCTCC AB 2015119 NCBI: GCA_014699135.1
[Ref.: #69480]	flagellated	yes	85.05	no
[Ref.: #69480]	gram-positive	no	99.005	no
[Ref.: #69480]	anaerobic	no	97.988	no
[Ref.: #69480]	aerobic	yes	84.223	no
[Ref.: #69480]	halophile	no	97.531	no
[Ref.: #69480]	spore-forming	no	95.335	no
[Ref.: #69480]	glucose-util	yes	61.675	yes
[Ref.: #69480]	thermophile	no	98.56	yes
[Ref.: #69480]	motile	yes	86.179	no
[Ref.: #69480]	glucose-ferment	no	90.247	yes

Availability in culture collections External links

[Ref.: #24074]

Culture collection no.

DSM 103791, CCTCC AB 2015119, KCTC 42243, JCM 30323

[Ref.: #90632]

SI-ID 396624

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Undibacterium aquatile sp. nov., isolated from a waterfall.	Du J, Akter S, Won K, Singh H, Shik Yin C, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000545	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24074

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103791

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90632

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID396624.1 )

* These data were automatically processed and therefore are not curated

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Undibacterium aquatile CCTCC AB 2015119

Undibacterium aquatile CCTCC AB 2015119

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