Undibacterium aquatile (DSM 103791, CCTCC AB 2015119, KCTC 42243)

Name: Undibacterium aquatile (DSM 103791, CCTCC AB 2015119, KCTC 42243)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132285

Type strain

Strain Designation THG-DN7.3

Culture col. no. DSM 103791 CCTCC AB 2015119 KCTC 42243 THG-DN7.3 JCM 30323

NCBI tax ID(s) 1537398

Special Collections DSMZ JCM KCTC

Links

Undibacterium aquatile THG-DN7.3 is a mesophilic prokaryote that was isolated from waterfall sample.

mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 396624

KCTC 42243,DSM 103791

@ref 20215

Last LPSN update 2025-12-16 10:01:28

Domain Pseudomonadati

Phylum Pseudomonadota

Class Betaproteobacteria

Order Burkholderiales

Family Oxalobacteraceae

Genus Undibacterium

Species Undibacterium aquatile

Full scientific name Undibacterium aquatile Du et al. 2015

Synonyms (1)

"Cognatundibacterium aquatile"

Morphology

Cell morphology

@ref	Gram stain	Confidence
125439	negative	99.5
125438	negative	98

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24074	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24074	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		99.7

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
68369	17634 ChEBI	D-glucose	-	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	-	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
68369	4853 ChEBI	esculin	-	hydrolysis	from API 20NE
68369	5291 ChEBI	gelatin	+	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
68369	59640 ChEBI	N-acetylglucosamine	-	assimilation	from API 20NE
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68369	35581 ChEBI	indole		from API 20NE

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
68369	beta-glucosidase	-	3.2.1.21	from API 20NE
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
68369	gelatinase	+		from API 20NE
68369	urease	-	3.5.1.5	from API 20NE

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
24074	+	-	-	-	-	-	+	-	-	-	-	-	-	+	-	-	-	-	-	-	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
24074	waterfall sample	waterfall of Gyeryongsan mountain, Daejeon	Republic of Korea	KOR	Asia	36.3878	127.296 36.3878/127.296
67770	Waterfall

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
24074	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1469913v1 assembly for Undibacterium aquatile CCTCC AB 2015119	scaffold	GCA_014699135	1537398.3	2920390971	1537398	75.54
124043	ASM4267885v1 assembly for Undibacterium aquatile JCM 30323	scaffold	GCA_042678855			1537398	74.63

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
24074	Undibacterium aquatile strain THG-DN7.3 16S ribosomal RNA gene, partial sequence	KM035973.3	1443	1537398
67770	Undibacterium aquatile strain THG-DN7.3 16S ribosomal RNA gene, partial sequence	KM035973	1443	1537398
124043	Undibacterium aquatile strain CCTCC AB 2015119 16S ribosomal RNA gene, partial sequence.	MT890092	1535	1537398

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Undibacterium aquatile CCTCC AB 2015119
NCBI: GCA_014699135

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.70	no
125439	motility	BacteriaNetⓘ	yes	84.00	no
125439	gram_stain	BacteriaNetⓘ	negative	99.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	82.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Undibacterium aquatile CCTCC AB 2015119
NCBI: GCA_014699135.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.00	no
125438	anaerobic	anaerobicⓘ	no	95.69	no
125438	aerobic	aerobicⓘ	yes	79.67	no
125438	spore-forming	spore-formingⓘ	no	85.90	no
125438	thermophilic	thermophileⓘ	no	96.97	yes
125438	flagellated	motile2+ⓘ	yes	79.35	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Undibacterium aquatile sp. nov., isolated from a waterfall.	Du J, Akter S, Won K, Singh H, Shik Yin C, Kook M, Yi TH	Int J Syst Evol Microbiol	10.1099/ijsem.0.000545	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24074	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103791
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68369	Automatically annotated from API 20NE .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Undibacterium aquatile (DSM 103791, CCTCC AB 2015119, KCTC 42243)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20NE

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014699135

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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