Name: Rahnella victoriana WW3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132220

Type strain:

Species: Rahnella victoriana

Strain Designation: WW3

Culture col. no.: DSM 27397, CIP 111496, LMG 27717, FRB 225

Strain history: CIP <- 2017, DSMZ <- C. Brady, Forest Res., Surrey, UK: strain FRB 225 <- S. Denman, Forest Res., Surrey, UK: strain WW3

NCBI tax ID(s): 1510570 (species)

SI-ID 391488

LMG 27717, DSM 27397, CIP 111496

Section

Rahnella victoriana WW3 is a mesophilic, Gram-negative, motile human pathogen that was isolated from Quercus robur.

Gram-negative
motile
rod-shaped
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Rahnella*
	Species	**Rahnella victoriana**
	Full Scientific Name (LPSN)	Rahnella victoriana Brady et al. 2017

Information on morphological and physiological properties Morphology

[Ref.: #123836]	Gram stain	negative

[Ref.: #123836]	Cell shape	rod-shaped

[Ref.: #123836]	Motility	yes

Multimedia content

[Ref.: #24009]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24009]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #24009]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #24009]

Culture medium composition

expand / minimize

[Ref.: #123836]

Culture medium

CIP Medium 328

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #24009]			growth	28 °C

[Ref.: #24009]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #24009]	17770	-	-	-	-	+	-	-	-	-	-	-	+	+	-	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24009]	Sample type/isolated from	Quercus robur
[Ref.: #24009]	Host species	Quercus robur
[Ref.: #24009]	Geographic location (country and/or sea, region)	Suffolk
[Ref.: #24009]	Country	United Kingdom
[Ref.: #24009]	Country ISO 3 Code	GBR
[Ref.: #24009]	Continent	Europe

[Ref.: #123836]	Sample type/isolated from	Quercus robur
[Ref.: #123836]	Geographic location (country and/or sea, region)	Suffolk
[Ref.: #123836]	Country	United Kingdom
[Ref.: #123836]	Country ISO 3 Code	GBR
[Ref.: #123836]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF308403 (>99% sequence identity) for Yersiniaceae from Microbeatlas

Aquatic Samples	435
Soil Samples	99
Animal Samples	935
Plant Samples	200
Total Samples	1669

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24009]	Pathogenicity (human)	yes, in single cases
[Ref.: #24009]	Pathogenicity (plant)	yes
[Ref.: #24009]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123836]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24009]	Rahnella victoriana strain FRB 225 16S ribosomal RNA gene, complete sequence	KF308403	1345	ENA	1510570 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Rahnella victoriana DSM 27397	GCA_004330295	scaffold	GenBank	1510570 tax ID	*
[Ref.: #66792]	Rahnella victoriana strain DSM 27397	1510570.6	wgs	PATRIC	1510570 tax ID	*
[Ref.: #66792]	Rahnella victoriana DSM 27397	2895106092	draft	JGI IMG/M	1510570 tax ID	*

[Ref.: #24009]

GC-content

53.2 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Rahnella victoriana DSM 27397 NCBI: GCA_004330295.1
[Ref.: #69480]	motile	yes	92.592	no
[Ref.: #69480]	flagellated	no	57.449	no
[Ref.: #69480]	gram-positive	no	98.255	no
[Ref.: #69480]	anaerobic	no	98.448	no
[Ref.: #69480]	aerobic	yes	69.07	no
[Ref.: #69480]	halophile	no	90.358	no
[Ref.: #69480]	spore-forming	no	94.273	no
[Ref.: #69480]	glucose-util	yes	96.096	no
[Ref.: #69480]	thermophile	no	99.662	yes
[Ref.: #69480]	glucose-ferment	yes	91.093	no

Availability in culture collections External links

[Ref.: #24009]

Culture collection no.

DSM 27397, CIP 111496, LMG 27717, FRB 225

[Ref.: #90570]

SI-ID 391488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Serratia microhaemolytica sp. nov., isolated from an artificial lake in Southern China.	Wang J, Zheng ML, Jiao JY, Wang WJ, Li S, Xiao M, Chen C, Qu PH, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01273-9	2019	*
Phylogeny	Rahnella victoriana sp. nov., Rahnella bruchi sp. nov., Rahnella woolbedingensis sp. nov., classification of Rahnella genomospecies 2 and 3 as Rahnella variigena sp. nov. and Rahnella inusitata sp. nov., respectively and emended description of the genus Rahnella.	Brady C, Hunter G, Kirk S, Arnold D, Denman S	Syst Appl Microbiol	10.1016/j.syapm.2014.09.001	2014	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24009

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 27397

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#90570

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID391488.1 )

#123836 Collection of Institut Pasteur ; Curators of the CIP; CIP 111496
* These data were automatically processed and therefore are not curated

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Rahnella victoriana DSM 27397

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