Name: Flaviaestuariibacter amylovorans GCR0105
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132218

Type strain:

Species: Flaviaestuariibacter amylovorans

Strain Designation: GCR0105

Culture col. no.: DSM 103129, JCM 17919, KACC 16454

Strain history: K. Y. Jahng GCR0105.

NCBI tax ID(s): 1084520 (species)

Section

Flaviaestuariibacter amylovorans GCR0105 is a mesophilic bacterium that was isolated from Water of the Mangyung estuary enclosed by the Saemangeum Embankment.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Chitinophagia*
	Order	*Chitinophagales*
	Family	*Chitinophagaceae*
	Genus	*Flaviaestuariibacter*
	Species	**Flaviaestuariibacter amylovorans**
	Full Scientific Name (LPSN)	Flaviaestuariibacter amylovorans corrig. Kang et al. 2015

Synonym

Flaviaesturariibacter amylovorans

Information on culture and growth conditions Culture and growth conditions

[Ref.: #24007]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #24007]

Culture medium growth

[Ref.: #24007]

Culture medium link

Medium recipe at MediaDive

[Ref.: #24007]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #24007]			growth	30 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #24007]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #24007]	Sample type/isolated from	Water of the Mangyung estuary enclosed by the Saemangeum Embankment
[Ref.: #24007]	Geographic location (country and/or sea, region)	JEOLlabuk-do
[Ref.: #24007]	Country	Republic of Korea
[Ref.: #24007]	Country ISO 3 Code	KOR
[Ref.: #24007]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Water of the Mangyung estuary enclosed by the Saemangeum Embankment
[Ref.: #67770]	Geographic location (country and/or sea, region)	located in JEOLlabuk-do
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Estuary

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence JN607160 (>99% sequence identity) for Flaviaesturariibacter amylovorans subclade from Microbeatlas

Aquatic Samples	107
Soil Samples	513
Animal Samples	29
Plant Samples	108
Total Samples	757

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #24007]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #24007]	Flaviaesturariibacter amylovorans strain GCR0105 16S ribosomal RNA gene, partial sequence	JN607160	1387	ENA	1084520 tax ID

[Ref.: #24007]	GC-content	42.9 mol%
[Ref.: #67770]	GC-content	42.9 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #24007]

Culture collection no.

DSM 103129, JCM 17919, KACC 16454

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flaviaesturariibacter terrae sp. nov., isolated from mountain soil.	Okiria J, Lee JJ, Park SJ, Lee YH, Lee SY, Park S, Kim BO, Ten LN, Jung HY	Int J Syst Evol Microbiol	10.1099/ijsem.0.001996	2017	*
Phylogeny	Flaviaesturariibacter luteus sp. nov., isolated from an agricultural floodplain soil, and emended description of the genus Flaviaesturariibacter.	Pascual J, Foesel BU, Geppert A, Huber KJ, Overmann J	Int J Syst Evol Microbiol	10.1099/ijsem.0.001854	2017	*
Phylogeny	Flaviaesturariibacter amylovorans gen. nov., sp. nov., a starch-hydrolysing bacterium, isolated from estuarine water.	Kang JY, Chun J, Seo JW, Kim CH, Jahng KY	Int J Syst Evol Microbiol	10.1099/ijs.0.000249	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#24007

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103129

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

* These data were automatically processed and therefore are not curated

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