Staphylococcus pragensis (DSM 102853, CCM 8529, LMG 28327)

Name: Staphylococcus pragensis (DSM 102853, CCM 8529, LMG 28327)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132215

Type strain

Strain Designation NRL/St 12/356, P5397

Culture col. no. DSM 102853 CCM 8529 LMG 28327 CCUG 72270 NRL/St 12/356 1 more

NCBI tax ID(s) 1611836

Special Collections DSMZ CCUG

Links

Staphylococcus pragensis NRL/St 12/356 is an aerobe, mesophilic prokaryote that was isolated from Ejaculate .

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 396400

DSM 102853,LMG 28327,CCM 8529,CCUG 72270

@ref 20215

Last LPSN update 2025-12-16 10:01:27

Domain Bacillati

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Staphylococcaceae

Genus Staphylococcus

Species Staphylococcus pragensis

Full scientific name Staphylococcus pragensis (Švec et al. 2015) Madhaiyan et al. 2020

Synonyms (1)

Staphylococcus petrasii subsp. pragensis

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
24004	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
24004	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
24004	positive	growth	37	mesophilic
63799	positive	growth	37	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
63799	aerobe
125439	obligate aerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68375	22599 ChEBI	arabinose	-	fermentation	from API ID32STA
68378	29016 ChEBI	arginine	-	hydrolysis	from API STA
68375	29016 ChEBI	arginine	-	hydrolysis	from API ID32STA
68375	17057 ChEBI	cellobiose	-	fermentation	from API ID32STA
68375	15824 ChEBI	D-fructose	-	fermentation	from API ID32STA
68378	15824 ChEBI	D-fructose	+	builds acid from	from API STA
68378	17634 ChEBI	D-glucose	-	builds acid from	from API STA
68375	17634 ChEBI	D-glucose	+	fermentation	from API ID32STA
68379	17634 ChEBI	D-glucose	+	fermentation	from API Coryne
68378	16899 ChEBI	D-mannitol	+	builds acid from	from API STA
68379	16899 ChEBI	D-mannitol	-	fermentation	from API Coryne
68375	16899 ChEBI	D-mannitol	-	fermentation	from API ID32STA
68378	16024 ChEBI	D-mannose	-	builds acid from	from API STA
68375	16024 ChEBI	D-mannose	-	fermentation	from API ID32STA
68379	16988 ChEBI	D-ribose	-	fermentation	from API Coryne
68375	16988 ChEBI	D-ribose	-	fermentation	from API ID32STA
68379	65327 ChEBI	D-xylose	-	fermentation	from API Coryne
68378	65327 ChEBI	D-xylose	-	builds acid from	from API STA
68379	4853 ChEBI	esculin	-	hydrolysis	from API Coryne
68375	4853 ChEBI	esculin	-	hydrolysis	from API ID32STA
68379	5291 ChEBI	gelatin	-	hydrolysis	from API Coryne
68379	28087 ChEBI	glycogen	-	fermentation	from API Coryne
68378	17716 ChEBI	lactose	+	builds acid from	from API STA
68379	17716 ChEBI	lactose	-	fermentation	from API Coryne
68375	17716 ChEBI	lactose	-	fermentation	from API ID32STA
68378	17306 ChEBI	maltose	-	builds acid from	from API STA
68379	17306 ChEBI	maltose	+	fermentation	from API Coryne
68375	17306 ChEBI	maltose	+	fermentation	from API ID32STA
68378	28053 ChEBI	melibiose	-	builds acid from	from API STA
68378	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API STA
68378	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API STA
68375	59640 ChEBI	N-acetylglucosamine	-	fermentation	from API ID32STA
68378	17632 ChEBI	nitrate	-	reduction	from API STA
68379	17632 ChEBI	nitrate	-	reduction	from API Coryne
68375	17632 ChEBI	nitrate	-	reduction	from API ID32STA
68375	18257 ChEBI	ornithine	-	degradation	from API ID32STA
68375	16634 ChEBI	raffinose	-	fermentation	from API ID32STA
68378	16634 ChEBI	raffinose	+	builds acid from	from API STA
68378	17992 ChEBI	sucrose	-	builds acid from	from API STA
68379	17992 ChEBI	sucrose	+	fermentation	from API Coryne
68375	17992 ChEBI	sucrose	+	fermentation	from API ID32STA
68375	27082 ChEBI	trehalose	+	fermentation	from API ID32STA
68378	27082 ChEBI	trehalose	-	builds acid from	from API STA
68375	32528 ChEBI	turanose	-	fermentation	from API ID32STA
68378	16199 ChEBI	urea	-	hydrolysis	from API STA
68379	16199 ChEBI	urea	-	hydrolysis	from API Coryne
68375	16199 ChEBI	urea	-	hydrolysis	from API ID32STA
68378	17151 ChEBI	xylitol	-	builds acid from	from API STA

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive
68378	lysostaphin			from API STA
68375	novobiocin			from API ID32STA

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68378	15688 ChEBI	acetoin		from API STA
68375	15688 ChEBI	acetoin		from API ID32STA

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
68378	15688 ChEBI	acetoin	-	from API STA
68375	15688 ChEBI	acetoin	+	from API ID32STA

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68378	alkaline phosphatase	-	3.1.3.1	from API STA
68375	alkaline phosphatase	-	3.1.3.1	from API ID32STA
68379	alkaline phosphatase	-	3.1.3.1	from API Coryne
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68379	alpha-glucosidase	-	3.2.1.20	from API Coryne
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68378	arginine dihydrolase	-	3.5.3.6	from API STA
68375	arginine dihydrolase	-	3.5.3.6	from API ID32STA
68382	beta-galactosidase	-	3.2.1.23	from API zym
68375	beta-galactosidase	-	3.2.1.23	from API ID32STA
68379	beta-galactosidase	-	3.2.1.23	from API Coryne
68382	beta-glucosidase	+	3.2.1.21	from API zym
68375	beta-glucosidase	-	3.2.1.21	from API ID32STA
68379	beta-glucosidase	-	3.2.1.21	from API Coryne
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68379	beta-glucuronidase	-	3.2.1.31	from API Coryne
68375	beta-glucuronidase	-	3.2.1.31	from API ID32STA
68379	catalase	+	1.11.1.6	from API Coryne
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68379	gelatinase	-		from API Coryne
68375	L-arginine arylamidase	-		from API ID32STA
68382	leucine arylamidase	-	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68379	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API Coryne
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
68375	ornithine decarboxylase	-	4.1.1.17	from API ID32STA
68379	pyrazinamidase	+	3.5.1.B15	from API Coryne
68375	pyrrolidonyl arylamidase	+	3.4.19.3	from API ID32STA
68379	pyrrolidonyl arylamidase	+	3.4.19.3	from API Coryne
68382	trypsin	-	3.4.21.4	from API zym
68378	urease	-	3.5.1.5	from API STA
68375	urease	-	3.5.1.5	from API ID32STA
68379	urease	-	3.5.1.5	from API Coryne
68382	valine arylamidase	-		from API zym

API coryne

@ref	Reduction of nitrateNIT	PYZ	PYRA	PAL	beta GUR	beta GAL	alpha GLU	beta NAG	ESC	URE	GEL	Control fermentationControl	GLU	RIB	XYL	MAN	MAL	LAC	SAC	GLYG	CAT
63799	-	+	+	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	+	-	+

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
63799	-	-	+	+	-	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-

API ID32STA

@ref	URE	ADH (Arg)	ODC	ESC	GLU	FRU	MNE	MAL	LAC	TRE	MAN	RAF	RIB	CEL	Reduction of nitrateNIT	Acetoin production (Voges Proskauer test)VP	beta GAL	L-arginine arylamidaseArgA	PAL	Pyrrolidonyl arylamidasePyrA	NOVO	SAC	NAG	TUR	ARA	beta GUR
24004	-	-	-	-	+	-	-	+	-	+	-	-	-	-	-	+	-	-	-	+	-	+	-	-	-	-
63799	-	-	-	-	+	-	-	+	-	+	-	-	-	-	-	+	-	-	-	+	-	+	-	-	-	-

API STA

@ref	Control	GLU	FRU	MNE	MAL	LAC	TRE	MAN	XLT	MEL	Reduction of nitrateNIT	PAL	Acetoin production (Voges Proskauer test)VP	RAF	XYL	SAC	Acid from methyl-alpha-D-glucopyranosideMDG	NAG	ADH	URE	LSTR
63799	not determinedn.d.	-	+	-	-	+	-	+	-	-	-	-	-	+	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Patient
#Host Body-Site	#Urogenital tract
#Host Body Product	#Urogenital tract
#Host	#Human

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
24004	Ejaculate (58-year-old patient with chronical prostatitis)	Prague	Czech Republic	CZE	Europe
63799	Human ejaculate,chronical prostatitis	Prague	Czech Republic	CZE	Europe

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1463550v1 assembly for Staphylococcus pragensis CCM 8529	contig	GCA_014635505	1611836.5	1611836	75.49
66792	ASM478566v1 assembly for Staphylococcus pragensis CCM 8529	scaffold	GCA_004785665	1611836.4	1611836	74.31
66792	ASM396881v1 assembly for Staphylococcus gallinarum NCTC 12195	scaffold	GCA_003968815	1611836.3	1611836

Genome browser: GCA_014635505

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
24004	Staphylococcus pragensis strain CCM 8529 16S ribosomal RNA gene, partial sequence	KM873669	1480	1611836
124043	Staphylococcus pragensis CCM 8529 gene for 16S rRNA, partial sequence.	LC752472	588	1611836
124043	Staphylococcus petrasii subsp. pragensis strain DSM 102853 16S ribosomal RNA gene, partial sequence.	MF678953	1283	1611836
124043	Staphylococcus petrasii subsp. pragensis strain DSM 102853 16S ribosomal RNA gene, partial sequence 16S-23S ribosomal RNA intergenic spacer, complete sequence and 23S ribosomal RNA gene, partial sequence.	MF678897	4457	1611836

GC content

@ref	GC-content (mol%)	Method
24004	33.0	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Staphylococcus pragensis CCM 8529
NCBI: GCA_004785665

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	72.30	no
125439	motility	BacteriaNetⓘ	no	54.80	no
125439	gram_stain	BacteriaNetⓘ	positive	77.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	91.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Staphylococcus pragensis CCM 8529
NCBI: GCA_004785665.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	89.17	no
125438	anaerobic	anaerobicⓘ	no	99.94	yes
125438	aerobic	aerobicⓘ	yes	68.26	yes
125438	spore-forming	spore-formingⓘ	no	75.98	no
125438	thermophilic	thermophileⓘ	no	97.80	yes
125438	flagellated	motile2+ⓘ	no	71.55	no

Literature

Title	Authors	Journal	DOI	Year
Diversity of Neurotransmitter-Producing Human Skin Commensals.	Rahmdel S, Purkayastha M, Nega M, Liberini E, Li N, Luqman A, Bruggemann H, Gotz F.	Int J Mol Sci	10.3390/ijms252212345	2024

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24004	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102853
#63799	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 72270
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68375	Automatically annotated from API ID32STA .
#68378	Automatically annotated from API STA .
#68379	Automatically annotated from API Coryne .
#68382	Automatically annotated from API zym .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Rate our new design

Content

About us

Staphylococcus pragensis (DSM 102853, CCM 8529, LMG 28327)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API coryne

API zym

API ID32STA

API STA

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_014635505

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media