Anaerosolibacter carboniphilus (DSM 103526, JCM 19988, KCTC 15396)

Name: Anaerosolibacter carboniphilus (DSM 103526, JCM 19988, KCTC 15396)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132208

Type strain

Strain Designation IRF19

Culture col. no. DSM 103526 JCM 19988 KCTC 15396 IRF19

NCBI tax ID(s) 1417629

Special Collections DSMZ JCM KCTC

History <- KCTC <- S.-K. Rhee, Chungbuk Natl. Univ., Korea S.-K. Rhee; Chungbuk Natl. Univ., South Korea; IRF19. <- Sung-Keun Rhee, Chungbuk National Univ.

Links

Anaerosolibacter carboniphilus IRF19 is an anaerobe, motile, rod-shaped bacterium that was isolated from contaminated soil from a coal mine tail.

motile rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 403109

KCTC 15396,JCM 19988,DSM 103526

@ref 20215

Last LPSN update 2026-02-09 11:31:39

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Clostridiaceae

Genus Anaerosolibacter

Species Anaerosolibacter carboniphilus

Full scientific name Anaerosolibacter carboniphilus Hong et al. 2015

Morphology

Cell morphology

@ref	Cell shape	Motility	Gram stain
67771	rod-shaped
67771			negative

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
23997	ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)		Medium recipe at MediaDive	Name: ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503) Composition: D-Glucose 4.98504 g/l Na2CO3 1.49551 g/l NaCl 0.997008 g/l KCl 0.498505 g/l MgCl2 x 6 H2O 0.398803 g/l Na2S x 9 H2O 0.299103 g/l NH4Cl 0.249252 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149552 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498505 g/l NaOH 0.000498504 g/l Pyridoxine hydrochloride 0.000299103 g/l Nicotinic acid 0.000199402 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l Calcium pantothenate 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
23997	PY + X MEDIUM (DSMZ Medium 104b)		Medium recipe at MediaDive	Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
23997	positive	growth	40
67770	positive	growth	40
67771	positive	growth	40

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
67771	anaerobe
125439	anaerobe	99.4

Observation

@ref	Observation
67770	quinones: MK-5(V-H₂)
67771	quinones: MK-5 (V-H2)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Contamination	-
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23997	contaminated soil from a coal mine tail	Republic of Korea	KOR	Asia
67770	Contaminated soil from a coal mine tail	Republic of Korea	KOR	Asia
67771	From petroleum contaminated soil, coal mine tail	Republic of Korea	KOR	Asia	37.1667	128.967 37.1667/128.967

Taxonmaps

69479

Global distribution of 16S sequence KF601947 (>99% sequence identity) for Anaerosolibacter carboniphilus subclade from Microbeatlas

Aquatic Samples	746
Soil Samples	1524
Animal Samples	828
Plant Samples	254
Total Samples	3352

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
23997	1	Risk group (German classification)

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1420587v1 assembly for Anaerosolibacter carboniphilus DSM 103526	scaffold	GCA_014205875	1417629.3	2861187593	1417629	58.52

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23997	Anaerosolibacter carboniphilus strain IRF19 16S ribosomal RNA gene, partial sequence	KF601947	1412		1417629

GC content

@ref	GC-content (mol%)	Method
23997	37.4
67770	37.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Anaerosolibacter carboniphilus DSM 103526
NCBI: GCA_014205875

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	76.30	no
125439	motility	BacteriaNetⓘ	yes	82.10	no
125439	gram_stain	BacteriaNetⓘ	variable	79.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anaerosolibacter carboniphilus DSM 103526
NCBI: GCA_014205875.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	52.56	yes
125438	anaerobic	anaerobicⓘ	yes	76.56	yes
125438	aerobic	aerobicⓘ	no	90.44	yes
125438	spore-forming	spore-formingⓘ	yes	73.47	no
125438	thermophilic	thermophileⓘ	no	87.26	no
125438	flagellated	motile2+ⓘ	yes	79.55	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerosolibacter carboniphilus gen. nov., sp. nov., a strictly anaerobic iron-reducing bacterium isolated from coal-contaminated soil.	Hong H, Kim SJ, Min UG, Lee YJ, Kim SG, Roh SW, Kim JG, Na JG, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.000124	2015

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23997	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103526
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anaerosolibacter carboniphilus (DSM 103526, JCM 19988, KCTC 15396)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014205875

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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