Name: Anaerosolibacter carboniphilus IRF19
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 132208

Type strain:

Species: Anaerosolibacter carboniphilus

Strain Designation: IRF19

Culture col. no.: DSM 103526, JCM 19988, KCTC 15396

Strain history: <- Sung-Keun Rhee, Chungbuk National Univ.

NCBI tax ID(s): 1417629 (species)

SI-ID 403109

DSM 103526

Special Collections

Section

Anaerosolibacter carboniphilus IRF19 is an anaerobe, spore-forming, motile bacterium that was isolated from contaminated soil from a coal mine tail.

motile
rod-shaped
spore-forming
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Anaerosolibacter*
	Species	**Anaerosolibacter carboniphilus**
	Full Scientific Name (LPSN)	Anaerosolibacter carboniphilus Hong et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative

[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #67771]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23997]

Culture medium

ANAEROBIC FRESHWATER (FWM) MEDIUM (DSMZ Medium 503)

[Ref.: #23997]

Culture medium growth

[Ref.: #23997]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23997]

Culture medium composition

expand / minimize

[Ref.: #23997]

Culture medium

PY + X MEDIUM (DSMZ Medium 104b)

[Ref.: #23997]

Culture medium growth

[Ref.: #23997]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23997]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #23997]	growth	40 °C
[Ref.: #67770]	growth	40 °C
[Ref.: #67771]	growth	40 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

yes Confidence in %93

[Ref.: #67770]	Observation	quinones: MK-5(V-H₂)
[Ref.: #67771]	Observation	quinones: MK-5 (V-H2)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23997]	Sample type/isolated from	contaminated soil from a coal mine tail
[Ref.: #23997]	Country	Republic of Korea
[Ref.: #23997]	Country ISO 3 Code	KOR
[Ref.: #23997]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Contaminated soil from a coal mine tail
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From petroleum contaminated soil, coal mine tail
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
[Ref.: #67771]	Geographic location	37.1667°/128.9670°
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	-
#Engineered	#Other	#Mine
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence KF601947 (>99% sequence identity) for Anaerosolibacter carboniphilus subclade from Microbeatlas

Aquatic Samples	746
Soil Samples	1524
Animal Samples	828
Plant Samples	254
Total Samples	3352

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23997]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23997]	Anaerosolibacter carboniphilus strain IRF19 16S ribosomal RNA gene, partial sequence	KF601947	1412	GenBank ENA	1417629 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anaerosolibacter carboniphilus DSM 103526	GCA_014205875	scaffold	GenBank ENA	1417629 tax ID	*
[Ref.: #66792]	Anaerosolibacter carboniphilus strain DSM 103526	1417629.3	wgs	PATRIC	1417629 tax ID	*
[Ref.: #66792]	Anaerosolibacter carboniphilus DSM 103526	2861187593	draft	JGI IMG/M	1417629 tax ID	*

[Ref.: #23997]	GC-content	37.4 mol%
[Ref.: #67770]	GC-content	37.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anaerosolibacter carboniphilus DSM 103526 NCBI: GCA_014205875.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	93	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anaerosolibacter carboniphilus DSM 103526 NCBI: GCA_014205875.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	52.555	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	yes	76.557	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	90.436	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	73.469	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	87.258	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.549	no

Availability in culture collections External links

[Ref.: #23997]

Culture collection no.

DSM 103526, JCM 19988, KCTC 15396

[Ref.: #90561]

SI-ID 403109

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anaerosolibacter carboniphilus gen. nov., sp. nov., a strictly anaerobic iron-reducing bacterium isolated from coal-contaminated soil.	Hong H, Kim SJ, Min UG, Lee YJ, Kim SG, Roh SW, Kim JG, Na JG, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.000124	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23997

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103526

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90561

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403109.1 )

* These data were automatically processed and therefore are not curated

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Anaerosolibacter carboniphilus DSM 103526

Anaerosolibacter carboniphilus DSM 103526

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