Name: Parabacteroides faecis 157
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 132203

Type strain:

Species: Parabacteroides faecis

Strain Designation: 157

Culture col. no.: DSM 102983, CCUG 66681, JCM 18682

Strain history: Y. Tanaka 157.

NCBI tax ID(s): 1217282 (species)

SI-ID 405887

DSM 102983, CCUG 66681

Section

Parabacteroides faecis 157 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human faeces.

Gram-negative
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Bacteroidia*
	Order	*Bacteroidales*
	Family	*Tannerellaceae*
	Genus	*Parabacteroides*
	Species	**Parabacteroides faecis**
	Full Scientific Name (LPSN)	Parabacteroides faecis Sakamoto et al. 2015

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #69480]	Motility	no Confidence in %92.444

[Ref.: #63357]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #23992]

Culture medium

CHOPPED MEAT MEDIUM (DSMZ Medium 78)

[Ref.: #23992]

Culture medium growth

[Ref.: #23992]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23992]

Culture medium composition

expand / minimize

[Ref.: #23992]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #23992]

Culture medium growth

[Ref.: #23992]

Culture medium link

Medium recipe at MediaDive

[Ref.: #23992]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #63357]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #63357]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #63357]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %99.687

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.824

[Ref.: #67770]

Observation

quinones: MK-9

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68380]	arginine ChEBI	-	hydrolysis	* from API rID32A
[Ref.: #68380]	D-mannose ChEBI	+	fermentation	* from API rID32A
[Ref.: #68380]	L-glutamate ChEBI	+	degradation	* from API rID32A
[Ref.: #68380]	nitrate ChEBI	-	reduction	* from API rID32A
[Ref.: #68380]	tryptophan ChEBI	-	energy source	* from API rID32A
[Ref.: #68380]	urea ChEBI	-	hydrolysis	* from API rID32A

	Metabolite production	Metabolite	Production
[Ref.: #68380]		indole ChEBI	no	* from API rID32A

	Physiological tests	Metabolite	Indole test
[Ref.: #68380]		indole ChEBI	-	* from API rID32A

	Enzyme	Enzyme activity	EC number
[Ref.: #68380]	alanine arylamidase	+	3.4.11.2	* from API rID32A
[Ref.: #68380]	alkaline phosphatase	+	3.1.3.1	* from API rID32A
[Ref.: #68380]	alpha-arabinosidase	+	3.2.1.55	* from API rID32A
[Ref.: #68380]	alpha-fucosidase	-	3.2.1.51	* from API rID32A
[Ref.: #68380]	alpha-galactosidase	+	3.2.1.22	* from API rID32A
[Ref.: #68380]	alpha-glucosidase	+	3.2.1.20	* from API rID32A
[Ref.: #68380]	arginine dihydrolase	-	3.5.3.6	* from API rID32A
[Ref.: #68380]	beta-galactosidase	+	3.2.1.23	* from API rID32A
[Ref.: #68380]	beta-Galactosidase 6-phosphate	-		* from API rID32A
[Ref.: #68380]	beta-glucuronidase	-	3.2.1.31	* from API rID32A
[Ref.: #68380]	glutamate decarboxylase	+	4.1.1.15	* from API rID32A
[Ref.: #68380]	histidine arylamidase	+		* from API rID32A
[Ref.: #68380]	L-arginine arylamidase	+		* from API rID32A
[Ref.: #68380]	leucine arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	leucyl glycin arylamidase	+	3.4.11.1	* from API rID32A
[Ref.: #68380]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32A
[Ref.: #68380]	phenylalanine arylamidase	-		* from API rID32A
[Ref.: #68380]	proline-arylamidase	-	3.4.11.5	* from API rID32A
[Ref.: #68380]	serine arylamidase	-		* from API rID32A
[Ref.: #68380]	tryptophan deaminase	-	4.1.99.1	* from API rID32A
[Ref.: #68380]	tyrosine arylamidase	-		* from API rID32A
[Ref.: #68380]	urease	-	3.5.1.5	* from API rID32A
	Only first 10 entries are displayed. Click here to see all.

API® rID32A:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Urease/urea hydrolysisURE	Arginine dihydrolaseADH (Arg)	alpha-Galactosidasealpha GAL	beta-Galactosidasebeta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha-Glucosidasealpha GLU	beta-Glucosidasebeta GLU	alpha-Arabinosidasealpha ARA	beta-Glucuronidasebeta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	Fermentation of D-mannoseMNE	Fermentation of raffinoseRAF	Glutamate decarboxylaseGDC	alpha-Fucosidasealpha FUC	Reduction of nitrateNIT	Indole productionIND	Alkaline phosphatasePAL	L-arginine arylamidaseArgA	Proline arylamidaseProA	Leucyl glycin arylamidaseLGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	Pyrrolidonyl arylamidasePyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
[Ref.: #23992]	12949	-	-	+	+	-	+	+/-	+	-	+	+	+/-	+	-	-	-	+	+	-	+	-	+	+/-	-	+	+/-	+	+/-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #23992]	Sample type/isolated from	human faeces
[Ref.: #23992]	Country	Japan
[Ref.: #23992]	Country ISO 3 Code	JPN
[Ref.: #23992]	Continent	Asia

[Ref.: #63357]	Sample type/isolated from	Human faeces
[Ref.: #63357]	Sampling date	2010-11-24
[Ref.: #63357]	Country	Japan
[Ref.: #63357]	Country ISO 3 Code	JPN
[Ref.: #63357]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Human feces
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB739697 (>99% sequence identity) for Parabacteroides faecis subclade from Microbeatlas

Aquatic Samples	3
Soil Samples	2
Animal Samples	874
Plant Samples	3
Total Samples	882

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #23992]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #23992]	Parabacteroides faecis gene for 16S ribosomal RNA, partial sequence	AB739697	1442	ENA	1217282 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Parabacteroides faecis DSM 102983	GCA_014199665	contig	GenBank	1217282 tax ID	*
[Ref.: #66792]	Parabacteroides faecis JCM 18682	GCA_014647375	scaffold	GenBank	1217282 tax ID	*
[Ref.: #66792]	Parabacteroides faecis strain DSM 102983	1217282.3	wgs	PATRIC	1217282 tax ID	*
[Ref.: #66792]	Parabacteroides faecis strain JCM 18682	1217282.5	wgs	PATRIC	1217282 tax ID	*
[Ref.: #66792]	Parabacteroides faecis DSM 102983	2828648469	draft	JGI IMG/M	1217282 tax ID	*

[Ref.: #23992]	GC-content	41.8 mol%
[Ref.: #67770]	GC-content	41.8 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Parabacteroides faecis strain JCM 18682 PATRIC: 1217282.5
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Parabacteroides faecis JCM 18682 NCBI: GCA_014647375.1
[Ref.: #69480]	flagellated	no	97.694	no
[Ref.: #69480]	gram-positive	no	97.447	no
[Ref.: #69480]	anaerobic	yes	97.927	yes
[Ref.: #69480]	aerobic	no	97.57	yes
[Ref.: #69480]	halophile	no	90.905	no
[Ref.: #69480]	spore-forming	no	93.844	no
[Ref.: #69480]	glucose-util	yes	90.227	no
[Ref.: #69480]	thermophile	no	99.558	yes
[Ref.: #69480]	motile	no	90.224	no
[Ref.: #69480]	glucose-ferment	yes	63.403	no

Availability in culture collections External links

[Ref.: #23992]

Culture collection no.

DSM 102983, CCUG 66681, JCM 18682

[Ref.: #90556]

SI-ID 405887

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Parabacteroides faecis sp. nov., isolated from human faeces.	Sakamoto M, Tanaka Y, Benno Y, Ohkuma M	Int J Syst Evol Microbiol	10.1099/ijs.0.000109	2015	*

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23992

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 102983

#63357 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 66681

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68380

Automatically annotated from API rID32A .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#90556

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID405887.1 )

* These data were automatically processed and therefore are not curated

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Parabacteroides faecis strain JCM 18682

Parabacteroides faecis JCM 18682

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