Nocardia bhagyanarayanae (DSM 103495, ATCC BAA-2548, KCTC 29209)

Name: Nocardia bhagyanarayanae (DSM 103495, ATCC BAA-2548, KCTC 29209)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 132185

Type strain

Strain Designation VRC07

Culture col. no. DSM 103495 ATCC BAA-2548 KCTC 29209 MTCC 11725 VRC07

NCBI tax ID(s) 1215925

Special Collections DSMZ KCTC

History <- KCTC; KCTC 29209

Links

Nocardia bhagyanarayanae VRC07 is a prokaryote that was isolated from rhizosphere of C. citrinus.

genome sequence 16S sequence

Name and taxonomic classification

SI-ID 286346

ATCC BAA-2548,KCTC 29209

@ref 20215

Last LPSN update 2026-02-09 11:31:39

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Mycobacteriales

Family Nocardiaceae

Genus Nocardia

Species Nocardia bhagyanarayanae

Full scientific name Nocardia bhagyanarayanae corrig. Vaddavalli et al. 2014

Synonyms (1)

Nocardia bhagyanesis

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	positive	94.071
125439		90.9
125439	positive	99.5

Multimedia

@ref:	23974
multimedia content:	DSM_103495.jpg
multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_103495.jpg
caption:	Medium 65 28°C
intellectual property rights:	© Leibniz-Institut DSMZ
manual_annotation:	1

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125438	aerobe	90.133
125439	obligate aerobe	99.4

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Shrub (Scrub)
#Host Body-Site	#Plant	#Rhizosphere

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude
23974	rhizosphere of C. citrinus	Hyderabad, botanical garden of Osmania University	India	IND	Asia	36.0983	81.8108 36.0983/81.8108

Taxonmaps

69479

Global distribution of 16S sequence JX076851 (>99% sequence identity) for Nocardia from Microbeatlas

Aquatic Samples	3
Soil Samples	3
Animal Samples	9
Plant Samples	2
Total Samples	17

Interaction and safety

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM671656v1 assembly for Nocardia bhagyanarayanae DSM 103495	contig	GCA_006716565	1215925.3	2818991230	1215925	77.44

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
23974	Nocardia bhagyanarayanae strain VRC07 16S ribosomal RNA gene, partial sequence	JX076851	1465		1215925

GC content

@ref	GC-content (mol%)	Method
23974	68.5	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Nocardia bhagyanarayanae DSM 103495
NCBI: GCA_006716565

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.40	no
125439	gram_stain	BacteriaNetⓘ	positive	99.50	no
125439	motility	BacteriaNetⓘ	no	90.90	no
125439	spore_formation	BacteriaNetⓘ	yes	85.10	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Nocardia bhagyanarayanae strain DSM 103495
PATRIC: 1215925.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	94.07	no
125438	anaerobic	anaerobicⓘ	no	97.25	no
125438	spore-forming	spore-formingⓘ	yes	59.07	no
125438	aerobic	aerobicⓘ	yes	90.13	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	88.57	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Nocardia bhagyanesis sp. nov., a novel actinomycete isolated from the rhizosphere of Callistemon citrinus (Curtis), India.	Vaddavalli R, Peddi S, Kothagauni SY, Linga VR	Antonie Van Leeuwenhoek	10.1007/s10482-013-0093-0	2013

References

#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#23974	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 103495
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Nocardia bhagyanarayanae (DSM 103495, ATCC BAA-2548, KCTC 29209)

Name and taxonomic classification

Morphology

Cell morphology

Multimedia

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Sequence information

Genome sequences

Genome browser: GCA_006716565

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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