Amycolatopsis orientalis (DSM 46075, ATCC 35164, IMET 7511)

Name: Amycolatopsis orientalis (DSM 46075, ATCC 35164, IMET 7511)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 13218

Type strain

Strain Designation F 719, F7-19, Kunz F-719

Culture col. no. DSM 46075 ATCC 35164 IMET 7511 IMRU 1311 F 719 2 more

NCBI tax ID(s) 1337958 31958

Special Collections DSMZ

History <- IMET <- R.E. Gordon, IMRU <- L.J. Kunz, F7-19

Links

Amycolatopsis orientalis F 719 is a mesophilic prokaryote that was isolated from clinical isolate.

mesophilic genome sequence

Name and taxonomic classification

SI-ID 40897

ATCC 35164,ATCC 35165,DSM 43387,DSM 46075,IMET 7511,KCTC 9414,IMET 1389,KCTC 9421,ATCC 55165,JCM 13851,CIP 109216

@ref 20215

Last LPSN update 2026-02-09 11:21:04

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Pseudonocardiales

Family Pseudonocardiaceae

Genus Amycolatopsis

Species Amycolatopsis orientalis

Full scientific name Amycolatopsis orientalis (Pittenger and Brigham 1956) Lechevalier et al. 1986

Synonyms (2)

"Streptomyces orientalis"
Nocardia orientalis

BacDive ID	Other strains from **Amycolatopsis orientalis** (5)	Type strain
13215	A. orientalis M 43-05865, Pittinger M43-05865, CCTMLa 2924, ... (type strain)
13216	A. orientalis N858, W-113/66, DSM 43388, CIP 109149, IMRU ...
104707	A. orientalis STH00299(ZIMET), HKI 0299
104708	A. orientalis STH00300(ZIMET), HKI 0300
163999	A. orientalis JCM 3128, NRRL B-3891

Morphology

Cell morphology

@ref	Confidence	Gram stain
125438	90.1
125439	99.1	positive
125439	92

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
12423	GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)		Medium recipe at MediaDive	Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
12423	ORGANIC MEDIUM 79 (DSMZ Medium 426)		Medium recipe at MediaDive	Name: ORGANIC MEDIUM 79 (DSMZ Medium 426) Composition: Agar 15.0 g/l Peptone 10.0 g/l Dextrose 10.0 g/l NaCl 6.0 g/l Yeast extract 2.0 g/l Casein peptone 2.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
12423	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	obligate aerobe	95.2

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Medical environment	#Clinic
#Infection	#Patient	-
#Infection	#Patient	#Specimen

Isolation

12423

Sample typeclinical isolate

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Biosafety level	Biosafety level comment
12423	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	AO46075_01 assembly for Amycolatopsis orientalis DSM 46075	contig	GCA_000411995	1337958.3	2554235157	1337958	16.28

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Amycolatopsis orientalis DSM 46075
NCBI: GCA_000411995

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	78.90	no
125439	motility	BacteriaNetⓘ	no	92.00	no
125439	gram_stain	BacteriaNetⓘ	positive	99.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Amycolatopsis orientalis DSM 46075
PATRIC: 1337958.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	86.20	no
125438	anaerobic	anaerobicⓘ	no	96.42	no
125438	spore-forming	spore-formingⓘ	yes	79.07	no
125438	aerobic	aerobicⓘ	yes	89.61	no
125438	thermophilic	thermophileⓘ	no	96.50	no
125438	flagellated	motile2+ⓘ	no	90.10	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	In silico identification of silent primycin biosynthetic gene clusters within the family Pseudonocardiaceae.	Kovacs-Valasek M, Fekete C, Kovacs-Valasek A.	Heliyon	10.1016/j.heliyon.2024.e41065	2025
	Genome Sequence of the Vancomycin-Producing Amycolatopsis orientalis subsp. orientalis Strain KCTC 9412T.	Jeong H, Sim YM, Kim HJ, Lee DW, Lim SK, Lee SJ.	Genome Announc	10.1128/genomea.00408-13	2013
Genetics	Genetics and Genomics of the Genus Amycolatopsis.	Kumari R, Singh P, Lal R.	Indian J Microbiol	10.1007/s12088-016-0590-8	2016
Phylogeny	Comparative genomics reveals phylogenetic distribution patterns of secondary metabolites in Amycolatopsis species.	Adamek M, Alanjary M, Sales-Ortells H, Goodfellow M, Bull AT, Winkler A, Wibberg D, Kalinowski J, Ziemert N.	BMC Genomics	10.1186/s12864-018-4809-4	2018
Genetics	Revisiting the Taxonomic Status of the Biomedically and Industrially Important Genus Amycolatopsis, Using a Phylogenomic Approach.	Sangal V, Goodfellow M, Blom J, Tan GYA, Klenk HP, Sutcliffe IC.	Front Microbiol	10.3389/fmicb.2018.02281	2018
Phylogeny	Fatty acid characterization of rapidly growing pathogenic aerobic actinomycetes as a means of identification.	McNabb A, Shuttleworth R, Behme R, Colby WD.	J Clin Microbiol	10.1128/jcm.35.6.1361-1368.1997	1997
Genetics	Genome Sequences of Amycolatopsis orientalis subsp. orientalis Strains DSM 43388 and DSM 46075.	Jeong H, Sim YM, Kim HJ, Lee YJ, Lee DW, Lim SK, Lee SJ	Genome Announc	10.1128/genomeA.00545-13	2013

References

#12423	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46075
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Amycolatopsis orientalis (DSM 46075, ATCC 35164, IMET 7511)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000411995

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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