Name: Amycolatopsis orientalis F 719
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 13218

Type strain:

Species: Amycolatopsis orientalis

Strain Designation: F 719, F7-19, Kunz F-719

Culture col. no.: DSM 46075, ATCC 35164, IMET 7511, IMRU 1311

Strain history: <- IMET <- R.E. Gordon, IMRU <- L.J. Kunz, F7-19

NCBI tax ID(s): 1337958 (strain), 31958 (species)

Other strains from Amycolatopsis orientalis

A. orientalis M 43-05865, Pittinger M43-05865, ... (type strain)
A. orientalis N858, W-113/66, DSM 43388, CIP ...
A. orientalis STH00299(ZIMET), HKI 0299
A. orientalis STH00300(ZIMET), HKI 0300
A. orientalis JCM 3128, NRRL B-3891

Section

Amycolatopsis orientalis F 719 is a spore-forming, mesophilic, Gram-positive human pathogen that was isolated from clinical isolate.

Gram-positive
spore-forming
human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Actinomycetota*
	Class	*Actinomycetes*
	Order	*Pseudonocardiales*
	Family	*Pseudonocardiaceae*
	Genus	*Amycolatopsis*
	Species	**Amycolatopsis orientalis**
	Full Scientific Name (LPSN)	Amycolatopsis orientalis (Pittenger and Brigham 1956) Lechevalier et al. 1986

	Synonym	"Streptomyces* orientalis"*
	Synonym	Nocardia orientalis

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #12423]

Culture medium

GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)

[Ref.: #12423]

Culture medium growth

[Ref.: #12423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12423]

Culture medium composition

expand / minimize

[Ref.: #12423]

Culture medium

ORGANIC MEDIUM 79 (DSMZ Medium 426)

[Ref.: #12423]

Culture medium growth

[Ref.: #12423]

Culture medium link

Medium recipe at MediaDive

[Ref.: #12423]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #12423]			growth	28 °C

[Ref.: #12423]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	yes Confidence in %100
[Ref.: #69480]	Ability of spore formation	yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #12423]	Sample type/isolated from	clinical isolate
* marker position based on {}

Isolation sources categories

#Infection	#Medical environment	#Clinic
#Infection	#Patient	-
#Infection	#Patient	#Specimen

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #12423]	Pathogenicity (human)	yes, in single cases
[Ref.: #12423]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Amycolatopsis orientalis DSM 46075	GCA_000411995	contig	GenBank	1337958 tax ID	*
[Ref.: #66792]	Amycolatopsis orientalis DSM 46075	1337958.3	wgs	PATRIC	1337958 tax ID	*
[Ref.: #66792]	Amycolatopsis orientalis DSM 46075	2554235157	draft	JGI IMG/M	1337958 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Amycolatopsis orientalis DSM 46075 PATRIC: 1337958.3
[Ref.: #69481]	spore-forming	yes	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Amycolatopsis orientalis DSM 46075 PATRIC: 1337958.3
[Ref.: #69480]	motile	no	94.11	no
[Ref.: #69480]	gram-positive	yes	89.474	no
[Ref.: #69480]	anaerobic	no	99.337	no
[Ref.: #69480]	halophile	no	92.33	no
[Ref.: #69480]	spore-forming	yes	92.995	no
[Ref.: #69480]	thermophile	no	98.127	yes
[Ref.: #69480]	glucose-util	yes	89.719	no
[Ref.: #69480]	aerobic	yes	92.867	no
[Ref.: #69480]	flagellated	no	97.542	no
[Ref.: #69480]	glucose-ferment	no	91.185	no

Availability in culture collections External links

[Ref.: #12423]

Culture collection no.

DSM 46075, ATCC 35164, IMET 7511, IMRU 1311

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genome Sequences of Amycolatopsis orientalis subsp. orientalis Strains DSM 43388 and DSM 46075.	Jeong H, Sim YM, Kim HJ, Lee YJ, Lee DW, Lim SK, Lee SJ	Genome Announc	10.1128/genomeA.00545-13	2013	*

References

#12423

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 46075

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Amycolatopsis orientalis DSM 46075

Amycolatopsis orientalis DSM 46075

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